Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47058 * 2 1 4 4 C 1.50701 * 109.47460 * 120.00202 * 2 1 3 5 5 C 1.38678 * 120.41871 * 259.72962 * 4 2 1 6 6 C 1.38625 * 118.42082 * 179.78391 * 5 4 2 7 7 C 1.38232 * 119.16069 * 0.50527 * 6 5 4 8 8 N 1.31854 * 120.76250 * 359.72570 * 7 6 5 9 9 C 1.31888 * 121.72547 * 0.02562 * 8 7 6 10 10 N 1.46899 * 109.47673 * 240.00384 * 2 1 3 11 11 C 1.46902 * 110.99794 * 59.99370 * 10 2 1 12 12 C 1.53238 * 109.35988 * 187.24640 * 11 10 2 13 13 N 1.47087 * 108.51950 * 306.20864 * 12 11 10 14 14 C 1.34779 * 120.86420 * 231.12573 * 13 12 11 15 15 O 1.21279 * 119.99890 * 180.02562 * 14 13 12 16 16 C 1.50691 * 119.99899 * 0.02562 * 14 13 12 17 17 H 1.09001 * 109.47428 * 40.00120 * 16 14 13 18 18 N 1.46905 * 109.46930 * 160.00273 * 16 14 13 19 19 C 1.52997 * 109.47463 * 280.00366 * 16 14 13 20 20 C 1.53004 * 109.47460 * 175.00184 * 19 16 14 21 21 C 1.50698 * 109.46953 * 179.97438 * 20 19 16 22 22 H 1.08003 * 120.00180 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99724 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00124 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47337 * 60.00127 * 25 23 21 27 27 H 1.48500 * 109.47336 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47118 * 300.00173 * 25 23 21 29 29 C 1.47085 * 118.25417 * 51.14152 * 13 12 11 30 30 C 1.46895 * 111.00492 * 184.29886 * 10 2 1 31 31 H 1.08998 * 109.46911 * 299.99517 * 1 2 3 32 32 H 1.08999 * 109.47352 * 59.99938 * 1 2 3 33 33 H 1.09004 * 109.46549 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.78909 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.41813 * 180.21764 * 6 5 4 36 36 H 1.07994 * 119.61851 * 179.75133 * 7 6 5 37 37 H 1.08003 * 119.61846 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.49551 * 307.21956 * 11 10 2 39 39 H 1.08996 * 109.49163 * 67.27527 * 11 10 2 40 40 H 1.08993 * 109.63279 * 65.89374 * 12 11 10 41 41 H 1.09004 * 109.62633 * 186.48058 * 12 11 10 42 42 H 1.00899 * 110.99914 * 60.00260 * 18 16 14 43 43 H 1.00910 * 110.99705 * 183.95520 * 18 16 14 44 44 H 1.09010 * 109.46981 * 295.00106 * 19 16 14 45 45 H 1.08999 * 109.47290 * 54.99462 * 19 16 14 46 46 H 1.08997 * 109.46720 * 299.99823 * 20 19 16 47 47 H 1.08999 * 109.46962 * 59.99967 * 20 19 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.62892 * 189.12343 * 29 13 12 50 50 H 1.09004 * 109.78626 * 68.64535 * 29 13 12 51 51 H 1.08994 * 109.49171 * 292.70775 * 30 10 2 52 52 H 1.08997 * 109.49262 * 52.75966 * 30 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4675 0.0131 2.3305 6 6 2.9170 -0.6826 3.4421 7 6 2.9265 -2.0646 3.4132 8 7 2.5097 -2.7198 2.3476 9 6 2.0709 -2.0910 1.2745 10 7 2.0198 -0.6924 -1.1994 11 6 1.5487 -0.0262 -2.4210 12 6 1.9256 -0.8749 -3.6400 13 7 3.3714 -1.1416 -3.5945 14 6 4.1536 -0.8970 -4.6645 15 8 5.3439 -1.1233 -4.6099 16 6 3.5492 -0.3425 -5.9286 17 1 2.8004 0.4077 -5.6747 18 7 4.6030 0.2743 -6.7455 19 6 2.8893 -1.4749 -6.7179 20 6 2.1690 -0.8948 -7.9368 21 6 1.5195 -2.0103 -8.7144 22 1 1.6109 -3.0309 -8.3732 23 6 0.8077 -1.7278 -9.8611 24 7 0.6961 -0.4850 -10.2763 25 14 0.0020 -3.1105 -10.8246 26 1 -0.9783 -3.8123 -9.9577 27 1 -0.6969 -2.5475 -12.0078 28 1 1.0412 -4.0710 -11.2750 29 6 3.9408 -1.6826 -2.3509 30 6 3.4846 -0.8016 -1.1831 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 2.4528 1.0930 2.3230 35 1 3.2599 -0.1516 4.3178 36 1 3.2789 -2.6140 4.2736 37 1 1.7379 -2.6617 0.4202 38 1 0.4655 0.0882 -2.3784 39 1 2.0152 0.9554 -2.5030 40 1 1.3788 -1.8173 -3.6134 41 1 1.6816 -0.3324 -4.5534 42 1 5.3098 -0.4014 -6.9942 43 1 4.2140 0.7103 -7.5683 44 1 3.6520 -2.1802 -7.0482 45 1 2.1695 -1.9899 -6.0816 46 1 1.4064 -0.1896 -7.6065 47 1 2.8888 -0.3799 -8.5731 48 1 0.1956 -0.2863 -11.0831 49 1 5.0290 -1.6742 -2.4125 50 1 3.5907 -2.7035 -2.1983 51 1 3.9244 0.1907 -1.2824 52 1 3.8054 -1.2492 -0.2424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424154550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = -14.230060 kcal Electronic energy + Delta-G solvation = -30890.169755 eV Core-core repulsion = 26888.424576 eV Total energy + Delta-G solvation = -4001.745180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.69378 -41.08630 -39.32749 -37.14800 -36.50929 -34.85195 -33.62910 -32.61946 -32.51048 -31.68761 -30.34976 -28.74541 -27.45284 -25.58976 -25.33997 -24.55354 -23.88394 -22.85484 -21.90173 -21.30575 -19.96764 -18.94069 -18.29180 -17.98984 -17.41861 -17.21787 -16.66418 -16.52806 -16.33780 -15.98746 -15.92837 -15.66600 -15.50191 -15.16134 -15.08049 -14.79691 -14.62408 -14.47528 -14.13836 -13.93301 -13.79143 -13.58955 -13.48598 -13.34866 -13.05117 -12.87994 -12.76416 -12.58112 -12.54318 -12.45193 -12.32280 -12.03833 -11.80387 -11.78784 -11.67052 -11.30298 -10.71462 -10.68333 -10.54080 -10.35498 -9.87191 -9.83369 -9.65898 -9.32531 -8.19980 -6.29851 0.19651 0.38358 1.41113 1.42324 1.50068 1.55956 1.87644 2.41043 2.68806 2.93679 3.13650 3.42488 3.49272 3.71973 3.76105 3.84751 3.95902 3.97974 4.03293 4.11691 4.12370 4.16119 4.19989 4.24892 4.34318 4.43181 4.44677 4.49447 4.63171 4.65368 4.68805 4.71650 4.80336 4.85017 4.86744 4.97506 5.00883 5.07298 5.08393 5.22816 5.31083 5.35264 5.44571 5.47777 5.66231 5.80833 5.81621 5.94662 5.97721 6.05728 6.22558 6.35288 6.45652 6.84793 7.10132 7.11870 7.38944 8.90384 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002218 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.585279 B =12623.342442 C =13288.952872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.130 3.870 3 H 0.058 0.942 4 C -0.133 4.133 5 C -0.077 4.077 6 C -0.169 4.169 7 C 0.080 3.920 8 N -0.518 5.518 9 C 0.110 3.890 10 N -0.531 5.531 11 C 0.044 3.956 12 C 0.104 3.896 13 N -0.609 5.609 14 C 0.526 3.474 15 O -0.575 6.575 16 C 0.083 3.917 17 H 0.110 0.890 18 N -0.831 5.831 19 C -0.120 4.120 20 C 0.033 3.967 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.007 3.993 24 N -0.925 5.925 25 Si 0.956 3.044 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.273 1.273 29 C 0.118 3.882 30 C 0.057 3.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.155 0.845 38 H 0.116 0.884 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.343 0.657 43 H 0.353 0.647 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.005 0.995 47 H 0.001 0.999 48 H 0.264 0.736 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.031 0.969 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 3.584 28.549 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.076 0.924 4 C -0.136 4.136 5 C -0.103 4.103 6 C -0.188 4.188 7 C -0.076 4.076 8 N -0.227 5.227 9 C -0.047 4.047 10 N -0.256 5.256 11 C -0.084 4.084 12 C -0.018 4.018 13 N -0.342 5.342 14 C 0.315 3.685 15 O -0.454 6.454 16 C -0.032 4.032 17 H 0.127 0.873 18 N -0.362 5.362 19 C -0.160 4.160 20 C -0.004 4.004 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.192 4.192 24 N -0.565 5.565 25 Si 0.782 3.218 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.005 4.005 30 C -0.071 4.071 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.189 0.811 37 H 0.172 0.828 38 H 0.134 0.866 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.156 0.844 43 H 0.168 0.832 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.024 0.976 47 H 0.019 0.981 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.049 0.951 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.102 2.658 29.092 29.213 hybrid contribution -0.253 0.324 -1.651 1.702 sum -0.151 2.982 27.440 27.602 Atomic orbital electron populations 1.21882 0.91835 1.03048 1.02954 1.20480 0.96642 0.94705 0.86025 0.92440 1.20812 1.00952 0.95186 0.96630 1.21795 0.94715 1.01573 0.92255 1.22414 1.00783 0.95475 1.00176 1.23219 0.95300 0.92807 0.96322 1.67750 1.11239 1.42448 1.01263 1.22709 0.94483 0.92046 0.95441 1.61959 1.09399 1.52353 1.01923 1.22566 1.02664 0.94929 0.88208 1.22120 0.78921 1.01443 0.99313 1.48178 1.09330 1.63978 1.12728 1.20802 0.86072 0.76629 0.85045 1.90603 1.16951 1.54168 1.83711 1.21413 0.93823 0.96886 0.91097 0.87278 1.58778 1.14353 1.36598 1.26489 1.22136 0.99101 0.96915 0.97820 1.18938 0.94255 0.95314 0.91880 1.21561 1.32844 0.94307 1.09439 0.92858 1.25829 0.97004 0.97840 0.98496 1.70045 1.42367 1.19731 1.24335 0.85632 0.78765 0.79339 0.78110 1.19151 1.20848 1.19861 1.21652 0.98993 0.97705 0.82139 1.22300 0.88134 0.98423 0.98289 0.91105 0.90840 0.91994 0.83003 0.82128 0.81138 0.82802 0.86569 0.94270 0.89625 0.88768 0.84402 0.83175 0.94066 0.91487 0.97620 0.98067 0.92743 0.90509 0.90307 0.95122 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.96 71.98 0.64 -0.85 16 2 C 0.13 1.66 2.30 44.17 0.10 1.76 16 3 H 0.06 0.70 8.03 -2.38 -0.02 0.68 16 4 C -0.13 -1.88 3.67 -19.77 -0.07 -1.96 16 5 C -0.08 -0.87 9.82 22.47 0.22 -0.65 16 6 C -0.17 -1.76 10.11 22.36 0.23 -1.54 16 7 C 0.08 1.13 11.18 84.69 0.95 2.08 16 8 N -0.52 -10.20 10.36 -195.84 -2.03 -12.23 16 9 C 0.11 1.97 9.30 84.67 0.79 2.75 16 10 N -0.53 -8.49 3.86 -874.43 -3.37 -11.86 16 11 C 0.04 0.72 5.39 86.38 0.47 1.19 16 12 C 0.10 2.24 5.72 86.35 0.49 2.73 16 13 N -0.61 -16.25 3.01 -817.93 -2.46 -18.71 16 14 C 0.53 17.81 6.96 87.65 0.61 18.42 16 15 O -0.58 -23.23 15.70 -3.02 -0.05 -23.28 16 16 C 0.08 2.81 2.36 44.16 0.10 2.91 16 17 H 0.11 3.41 6.51 -2.39 -0.02 3.39 16 18 N -0.83 -29.11 8.94 -171.81 -1.54 -30.65 16 19 C -0.12 -4.67 4.58 30.59 0.14 -4.53 16 20 C 0.03 1.60 4.74 29.85 0.14 1.75 16 21 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 22 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 23 C 0.01 0.38 5.46 84.66 0.46 0.85 16 24 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 25 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.12 2.80 6.60 86.35 0.57 3.37 16 30 C 0.06 1.08 5.23 86.38 0.45 1.53 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.69 6.25 -2.39 -0.01 0.67 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.15 2.87 7.72 -2.91 -0.02 2.85 16 38 H 0.12 1.44 5.95 -2.39 -0.01 1.43 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 2.13 5.33 -2.39 -0.01 2.12 16 42 H 0.34 12.38 8.58 -89.69 -0.77 11.61 16 43 H 0.35 12.38 7.55 -89.69 -0.68 11.70 16 44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.07 2.47 7.25 -2.39 -0.02 2.45 16 46 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.00 0.05 6.87 -2.39 -0.02 0.04 16 48 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.08 2.10 7.06 -2.39 -0.02 2.08 16 50 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 1.62 5.93 -2.39 -0.01 1.60 16 Total: -1.00 -68.60 405.92 -1.12 -69.71 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.51 Total: 34.60 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.53 Total: 0.58 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -9.12 Total: -126.67 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.60 -1.12 -69.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424154550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.484 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds