Wall clock time and date at job start Wed Apr 1 2020 04:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 119.99963 * 2 1 4 4 N 1.46507 * 109.47336 * 123.53680 * 3 2 1 5 5 C 1.36734 * 127.13723 * 85.75108 * 4 3 2 6 6 C 1.50704 * 126.34704 * 359.97438 * 5 4 3 7 7 H 1.08998 * 110.43378 * 0.41446 * 6 5 4 8 8 C 1.54802 * 110.60318 * 123.03850 * 6 5 4 9 9 C 1.54992 * 102.09569 * 139.61143 * 8 6 5 10 10 O 1.44386 * 103.48984 * 322.97691 * 9 8 6 11 11 C 1.43745 * 106.97345 * 40.05873 * 10 9 8 12 12 H 1.08994 * 109.87748 * 214.06176 * 11 10 9 13 13 C 1.52999 * 110.00169 * 92.98171 * 11 10 9 14 14 N 1.30284 * 107.30624 * 179.73619 * 5 4 3 15 15 N 1.28530 * 110.05449 * 0.25926 * 14 5 4 16 16 C 1.31220 * 109.85743 * 0.02562 * 15 14 5 17 17 N 1.38583 * 126.47166 * 180.02562 * 16 15 14 18 18 C 1.46906 * 110.99693 * 257.72944 * 17 16 15 19 19 C 1.50702 * 109.46858 * 57.50993 * 18 17 16 20 20 H 1.07996 * 120.00176 * 356.53941 * 19 18 17 21 21 C 1.37877 * 119.99446 * 176.53542 * 19 18 17 22 22 N 1.31517 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47462 * 89.99943 * 23 21 19 25 25 H 1.48503 * 109.47324 * 210.00237 * 23 21 19 26 26 H 1.48508 * 109.47015 * 330.00114 * 23 21 19 27 27 C 1.46905 * 111.00132 * 21.68130 * 17 16 15 28 28 C 1.52995 * 109.47193 * 163.80531 * 27 17 16 29 29 C 1.53009 * 117.49747 * 244.98547 * 28 27 17 30 30 C 1.53004 * 117.50172 * 176.36334 * 28 27 17 31 31 H 1.08003 * 119.99516 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.99949 * 179.97438 * 1 2 3 33 33 H 1.07994 * 119.99718 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.47563 * 3.53277 * 3 2 1 35 35 H 1.09003 * 109.47073 * 243.53249 * 3 2 1 36 36 H 1.09004 * 110.90966 * 257.80867 * 8 6 5 37 37 H 1.09003 * 110.90671 * 21.41176 * 8 6 5 38 38 H 1.09004 * 110.62337 * 204.47847 * 9 8 6 39 39 H 1.08998 * 110.75456 * 81.54018 * 9 8 6 40 40 H 1.08997 * 109.47293 * 302.09216 * 13 11 10 41 41 H 1.09000 * 109.47146 * 62.09275 * 13 11 10 42 42 H 1.09005 * 109.47050 * 182.09389 * 13 11 10 43 43 H 1.09001 * 109.47041 * 177.50537 * 18 17 16 44 44 H 1.08993 * 109.47135 * 297.50915 * 18 17 16 45 45 H 0.97003 * 119.99472 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.47060 * 283.80293 * 27 17 16 47 47 H 1.08997 * 109.47089 * 43.79895 * 27 17 16 48 48 H 1.08999 * 115.55042 * 30.68475 * 28 27 17 49 49 H 1.09001 * 117.49374 * 359.97438 * 29 28 27 50 50 H 1.08998 * 117.50113 * 145.01679 * 29 28 27 51 51 H 1.09000 * 117.49798 * 214.97926 * 30 28 27 52 52 H 1.08997 * 117.49148 * 359.97224 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9686 1.3465 1.1513 5 6 4.2380 0.8434 1.2219 6 6 4.9799 0.1330 0.1191 7 1 4.3626 0.0724 -0.7771 8 6 6.3153 0.8523 -0.1903 9 6 7.2838 -0.3387 -0.4044 10 8 6.8437 -1.3098 0.5693 11 6 5.4067 -1.2754 0.5764 12 1 5.0364 -1.4661 1.5836 13 6 4.8532 -2.3257 -0.3887 14 7 4.6893 1.0965 2.4176 15 7 3.7962 1.7157 3.1038 16 6 2.7181 1.8918 2.3767 17 7 1.5489 2.5195 2.7757 18 6 0.5060 1.5357 3.0960 19 6 1.0056 0.6065 4.1722 20 1 2.0175 0.6986 4.5381 21 6 0.1706 -0.3611 4.6896 22 7 -1.0615 -0.4734 4.2437 23 14 0.7900 -1.5133 6.0231 24 1 0.5185 -0.9187 7.3565 25 1 0.0920 -2.8194 5.9122 26 1 2.2519 -1.7179 5.8608 27 6 1.7943 3.4158 3.9136 28 6 0.6143 4.3770 4.0695 29 6 0.8813 5.8663 3.8414 30 6 0.6399 5.3404 5.2579 31 1 -0.5399 0.9354 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3569 2.1326 0.0633 35 1 2.6418 1.3907 -0.9200 36 1 6.2325 1.4538 -1.0956 37 1 6.6322 1.4645 0.6541 38 1 8.3126 -0.0371 -0.2076 39 1 7.1884 -0.7374 -1.4143 40 1 5.2416 -2.1395 -1.3900 41 1 5.1589 -3.3187 -0.0593 42 1 3.7649 -2.2670 -0.4045 43 1 -0.3861 2.0534 3.4484 44 1 0.2631 0.9600 2.2030 45 1 -1.6487 -1.1544 4.6075 46 1 1.9050 2.8259 4.8234 47 1 2.7064 3.9858 3.7369 48 1 -0.3548 3.9859 3.7594 49 1 1.8978 6.1611 3.5808 50 1 0.0879 6.4552 3.3812 51 1 -0.3122 5.5832 5.7295 52 1 1.4974 5.2889 5.9288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592399149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:28 Heat of formation + Delta-G solvation = 89.097818 kcal Electronic energy + Delta-G solvation = -32547.214900 eV Core-core repulsion = 28549.950353 eV Total energy + Delta-G solvation = -3997.264547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.39436 -39.54025 -37.83525 -35.94637 -35.49877 -33.06531 -32.55846 -32.10392 -31.27090 -29.00428 -27.44187 -26.69874 -26.05371 -25.25060 -22.80650 -22.39692 -22.02241 -21.66854 -20.47233 -20.22351 -19.55384 -19.13341 -17.19459 -16.65852 -16.22692 -16.04646 -15.74406 -15.54063 -15.04382 -14.91969 -14.44995 -14.40191 -13.95380 -13.64471 -13.43409 -13.34879 -13.28623 -12.84512 -12.69955 -12.21341 -12.08898 -11.99267 -11.82250 -11.40580 -11.34467 -11.26745 -11.18125 -11.11656 -11.03127 -10.96509 -10.87808 -10.69126 -10.55544 -10.25141 -10.05528 -9.89591 -9.68925 -9.63107 -9.51771 -9.47478 -9.16217 -8.62544 -8.47493 -7.45572 -6.12170 -4.17103 2.16684 2.46745 3.03166 3.27691 3.34151 3.43462 3.53211 3.86680 4.18292 4.40260 4.42354 4.58783 4.60525 4.70885 4.86455 5.00705 5.05047 5.08100 5.13532 5.20997 5.23230 5.25100 5.33507 5.34605 5.44114 5.47395 5.49623 5.65081 5.69174 5.74936 5.86847 5.90546 5.94779 5.99889 6.05026 6.09470 6.11839 6.19333 6.22931 6.33082 6.42094 6.52854 6.68129 6.75769 6.83290 6.87468 6.91034 7.01748 7.27012 7.32637 7.61789 7.85299 8.05901 8.19109 8.92158 9.47036 9.50608 10.94551 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.004421 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.403274 B = 6331.351024 C = 7448.281120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.192 4.192 3 C 0.146 3.854 4 N -0.470 5.470 5 C 0.154 3.846 6 C -0.019 4.019 7 H 0.095 0.905 8 C -0.143 4.143 9 C 0.048 3.952 10 O -0.364 6.364 11 C 0.086 3.914 12 H 0.102 0.898 13 C -0.170 4.170 14 N -0.277 5.277 15 N -0.330 5.330 16 C 0.415 3.585 17 N -0.468 5.468 18 C 0.185 3.815 19 C -0.548 4.548 20 H 0.070 0.930 21 C 0.071 3.929 22 N -0.891 5.891 23 Si 0.886 3.114 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.108 3.892 28 C -0.130 4.130 29 C -0.185 4.185 30 C -0.180 4.180 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.262 0.738 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.110 0.890 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 4.428 -13.383 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.211 4.211 3 C 0.023 3.977 4 N -0.164 5.164 5 C -0.114 4.114 6 C -0.041 4.041 7 H 0.113 0.887 8 C -0.181 4.181 9 C -0.029 4.029 10 O -0.283 6.283 11 C 0.027 3.973 12 H 0.120 0.880 13 C -0.227 4.227 14 N -0.116 5.116 15 N -0.174 5.174 16 C 0.059 3.941 17 N -0.192 5.192 18 C 0.062 3.938 19 C -0.587 4.587 20 H 0.088 0.912 21 C -0.132 4.132 22 N -0.530 5.530 23 Si 0.714 3.286 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.019 4.019 28 C -0.148 4.148 29 C -0.222 4.222 30 C -0.218 4.218 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.109 0.891 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.188 4.551 -12.432 15.064 hybrid contribution -0.881 -1.160 0.222 1.473 sum 6.306 3.391 -12.210 14.155 Atomic orbital electron populations 1.23865 0.95458 1.02473 0.95156 1.22885 0.96411 0.97391 1.04435 1.20803 0.92375 0.97986 0.86511 1.46050 1.12821 1.45580 1.11914 1.23896 0.84342 1.05210 0.97914 1.20792 0.95746 0.93984 0.93538 0.88699 1.23215 0.93192 0.98567 1.03168 1.23510 0.98973 0.87809 0.92626 1.88950 1.19490 1.60001 1.59847 1.22747 0.81389 0.92223 1.00894 0.88036 1.22300 1.01303 0.99756 0.99356 1.73829 1.23881 1.13151 1.00768 1.74692 1.00136 1.19375 1.23188 1.22453 0.94548 0.94764 0.82336 1.59288 1.03312 1.19708 1.36923 1.20131 0.88189 0.88418 0.97095 1.21815 0.99551 1.16096 1.21259 0.91180 1.24841 0.94640 0.97160 0.96543 1.69929 1.05985 1.34339 1.42716 0.86661 0.79358 0.80212 0.82391 1.20421 1.21264 1.19686 1.21413 0.95051 0.92594 0.92847 1.22234 1.00744 0.90154 1.01701 1.22987 1.02003 0.97658 0.99527 1.22896 1.02819 1.04772 0.91264 0.88094 0.87911 0.87312 0.87977 0.89285 0.90119 0.89050 0.88890 0.92362 0.92322 0.91542 0.91460 0.93413 0.93816 0.92879 0.91086 0.91868 0.87176 0.89353 0.89457 0.89114 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 12.56 29.01 0.36 -1.54 16 2 C -0.19 -2.78 9.27 -36.03 -0.33 -3.12 16 3 C 0.15 2.04 6.16 -5.19 -0.03 2.01 16 4 N -0.47 -8.42 2.79 -115.37 -0.32 -8.74 16 5 C 0.15 2.72 6.36 -154.03 -0.98 1.74 16 6 C -0.02 -0.25 3.08 -90.24 -0.28 -0.53 16 7 H 0.09 1.02 6.68 -51.93 -0.35 0.67 16 8 C -0.14 -1.61 6.70 -24.73 -0.17 -1.77 16 9 C 0.05 0.50 7.67 38.21 0.29 0.79 16 10 O -0.36 -5.23 11.20 -35.23 -0.39 -5.62 16 11 C 0.09 1.21 3.74 -26.16 -0.10 1.11 16 12 H 0.10 1.76 7.68 -51.93 -0.40 1.36 16 13 C -0.17 -1.89 9.31 37.16 0.35 -1.55 16 14 N -0.28 -5.93 12.00 32.99 0.40 -5.53 16 15 N -0.33 -7.64 10.74 30.31 0.33 -7.32 16 16 C 0.42 8.82 5.73 -318.88 -1.83 6.99 16 17 N -0.47 -9.73 4.69 -175.88 -0.82 -10.55 16 18 C 0.19 4.40 5.00 -4.97 -0.02 4.37 16 19 C -0.55 -14.83 7.53 -34.44 -0.26 -15.09 16 20 H 0.07 2.03 6.24 -52.49 -0.33 1.70 16 21 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 22 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 23 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.11 2.14 4.61 -3.82 -0.02 2.12 16 28 C -0.13 -2.20 5.69 -90.62 -0.52 -2.72 16 29 C -0.18 -2.57 10.18 -26.72 -0.27 -2.84 16 30 C -0.18 -2.61 10.25 -26.73 -0.27 -2.89 16 31 H 0.10 1.40 7.84 -52.48 -0.41 0.99 16 32 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.57 7.93 -52.49 -0.42 1.15 16 34 H 0.10 1.43 7.78 -51.93 -0.40 1.03 16 35 H 0.09 0.94 7.45 -51.93 -0.39 0.56 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.23 7.73 -51.93 -0.40 0.83 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 43 H 0.05 1.20 6.58 -51.93 -0.34 0.86 16 44 H 0.04 1.05 5.42 -51.93 -0.28 0.77 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.07 1.61 6.72 -51.93 -0.35 1.26 16 47 H 0.06 1.22 7.60 -51.93 -0.39 0.82 16 48 H 0.11 2.00 6.78 -51.93 -0.35 1.65 16 49 H 0.09 1.19 8.04 -51.93 -0.42 0.78 16 50 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 414.83 15.07 6.25 6.25 Total: -1.00 -31.77 414.83 -11.61 -43.38 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.58 Total: 6.29 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -4.17 Total: -11.05 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.31 Total: -56.31 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.39 Total: -5.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.77 -11.61 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592399149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.474 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds