Wall clock time and date at job start Wed Apr 1 2020 04:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 119.99963 * 2 1 4 4 N 1.46507 * 109.47336 * 123.53680 * 3 2 1 5 5 C 1.36734 * 127.13723 * 85.75108 * 4 3 2 6 6 C 1.50704 * 126.34704 * 359.97438 * 5 4 3 7 7 H 1.08998 * 110.43378 * 0.41446 * 6 5 4 8 8 C 1.54802 * 110.60318 * 123.03850 * 6 5 4 9 9 C 1.54992 * 102.09569 * 139.61143 * 8 6 5 10 10 O 1.44386 * 103.48984 * 322.97691 * 9 8 6 11 11 C 1.43745 * 106.97345 * 40.05873 * 10 9 8 12 12 H 1.08994 * 109.87748 * 214.06176 * 11 10 9 13 13 C 1.52999 * 110.00169 * 92.98171 * 11 10 9 14 14 N 1.30284 * 107.30624 * 179.73619 * 5 4 3 15 15 N 1.28530 * 110.05449 * 0.25926 * 14 5 4 16 16 C 1.31220 * 109.85743 * 0.02562 * 15 14 5 17 17 N 1.38583 * 126.47166 * 180.02562 * 16 15 14 18 18 C 1.46906 * 110.99693 * 257.72944 * 17 16 15 19 19 C 1.50702 * 109.46858 * 57.50993 * 18 17 16 20 20 H 1.07996 * 120.00176 * 356.53941 * 19 18 17 21 21 C 1.37877 * 119.99446 * 176.53542 * 19 18 17 22 22 N 1.31517 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47462 * 89.99943 * 23 21 19 25 25 H 1.48503 * 109.47324 * 210.00237 * 23 21 19 26 26 H 1.48508 * 109.47015 * 330.00114 * 23 21 19 27 27 C 1.46905 * 111.00132 * 21.68130 * 17 16 15 28 28 C 1.52995 * 109.47193 * 163.80531 * 27 17 16 29 29 C 1.53009 * 117.49747 * 244.98547 * 28 27 17 30 30 C 1.53004 * 117.50172 * 176.36334 * 28 27 17 31 31 H 1.08003 * 119.99516 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.99949 * 179.97438 * 1 2 3 33 33 H 1.07994 * 119.99718 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.47563 * 3.53277 * 3 2 1 35 35 H 1.09003 * 109.47073 * 243.53249 * 3 2 1 36 36 H 1.09004 * 110.90966 * 257.80867 * 8 6 5 37 37 H 1.09003 * 110.90671 * 21.41176 * 8 6 5 38 38 H 1.09004 * 110.62337 * 204.47847 * 9 8 6 39 39 H 1.08998 * 110.75456 * 81.54018 * 9 8 6 40 40 H 1.08997 * 109.47293 * 302.09216 * 13 11 10 41 41 H 1.09000 * 109.47146 * 62.09275 * 13 11 10 42 42 H 1.09005 * 109.47050 * 182.09389 * 13 11 10 43 43 H 1.09001 * 109.47041 * 177.50537 * 18 17 16 44 44 H 1.08993 * 109.47135 * 297.50915 * 18 17 16 45 45 H 0.97003 * 119.99472 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.47060 * 283.80293 * 27 17 16 47 47 H 1.08997 * 109.47089 * 43.79895 * 27 17 16 48 48 H 1.08999 * 115.55042 * 30.68475 * 28 27 17 49 49 H 1.09001 * 117.49374 * 359.97438 * 29 28 27 50 50 H 1.08998 * 117.50113 * 145.01679 * 29 28 27 51 51 H 1.09000 * 117.49798 * 214.97926 * 30 28 27 52 52 H 1.08997 * 117.49148 * 359.97224 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9686 1.3465 1.1513 5 6 4.2380 0.8434 1.2219 6 6 4.9799 0.1330 0.1191 7 1 4.3626 0.0724 -0.7771 8 6 6.3153 0.8523 -0.1903 9 6 7.2838 -0.3387 -0.4044 10 8 6.8437 -1.3098 0.5693 11 6 5.4067 -1.2754 0.5764 12 1 5.0364 -1.4661 1.5836 13 6 4.8532 -2.3257 -0.3887 14 7 4.6893 1.0965 2.4176 15 7 3.7962 1.7157 3.1038 16 6 2.7181 1.8918 2.3767 17 7 1.5489 2.5195 2.7757 18 6 0.5060 1.5357 3.0960 19 6 1.0056 0.6065 4.1722 20 1 2.0175 0.6986 4.5381 21 6 0.1706 -0.3611 4.6896 22 7 -1.0615 -0.4734 4.2437 23 14 0.7900 -1.5133 6.0231 24 1 0.5185 -0.9187 7.3565 25 1 0.0920 -2.8194 5.9122 26 1 2.2519 -1.7179 5.8608 27 6 1.7943 3.4158 3.9136 28 6 0.6143 4.3770 4.0695 29 6 0.8813 5.8663 3.8414 30 6 0.6399 5.3404 5.2579 31 1 -0.5399 0.9354 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3569 2.1326 0.0633 35 1 2.6418 1.3907 -0.9200 36 1 6.2325 1.4538 -1.0956 37 1 6.6322 1.4645 0.6541 38 1 8.3126 -0.0371 -0.2076 39 1 7.1884 -0.7374 -1.4143 40 1 5.2416 -2.1395 -1.3900 41 1 5.1589 -3.3187 -0.0593 42 1 3.7649 -2.2670 -0.4045 43 1 -0.3861 2.0534 3.4484 44 1 0.2631 0.9600 2.2030 45 1 -1.6487 -1.1544 4.6075 46 1 1.9050 2.8259 4.8234 47 1 2.7064 3.9858 3.7369 48 1 -0.3548 3.9859 3.7594 49 1 1.8978 6.1611 3.5808 50 1 0.0879 6.4552 3.3812 51 1 -0.3122 5.5832 5.7295 52 1 1.4974 5.2889 5.9288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592399149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:27 Heat of formation + Delta-G solvation = 72.046518 kcal Electronic energy + Delta-G solvation = -32547.954300 eV Core-core repulsion = 28549.950353 eV Total energy + Delta-G solvation = -3998.003946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.90473 -40.57523 -39.33047 -37.30629 -36.88246 -34.68551 -34.12480 -33.45062 -32.18273 -30.44180 -29.26401 -27.96342 -27.16411 -26.93794 -24.60611 -23.62076 -23.17056 -22.63865 -21.89319 -21.46593 -20.92869 -20.49119 -18.79621 -18.20710 -17.58702 -17.37865 -17.16086 -16.78062 -16.61685 -16.18741 -15.99554 -15.64370 -15.37038 -14.96160 -14.70558 -14.61724 -14.49849 -14.29106 -13.79969 -13.72141 -13.32039 -13.17348 -13.07985 -13.02330 -12.88238 -12.66557 -12.49986 -12.42379 -12.37041 -12.29544 -12.23017 -12.07600 -11.99731 -11.92124 -11.88477 -11.26651 -11.20456 -10.93285 -10.86497 -10.68204 -10.65632 -10.34460 -10.22241 -9.16732 -8.24744 -6.34301 0.79909 1.12271 1.25128 1.27706 1.38930 1.71500 1.95059 2.31769 2.85985 2.91299 3.05720 3.15553 3.29588 3.59140 3.60614 3.79071 3.90955 3.94149 3.98523 4.08230 4.13427 4.18422 4.20355 4.29369 4.33233 4.38388 4.39936 4.50771 4.54163 4.66849 4.71140 4.81099 4.87636 4.89852 4.93935 4.94146 5.00792 5.05008 5.08776 5.11795 5.19062 5.21212 5.24742 5.29138 5.31326 5.40571 5.61481 5.67755 5.70463 5.75696 5.91620 5.97390 6.06011 6.50806 6.78919 7.33601 7.91515 8.79870 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.004421 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.403274 B = 6331.351024 C = 7448.281120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.195 4.195 3 C 0.139 3.861 4 N -0.466 5.466 5 C 0.177 3.823 6 C -0.020 4.020 7 H 0.132 0.868 8 C -0.137 4.137 9 C 0.046 3.954 10 O -0.393 6.393 11 C 0.087 3.913 12 H 0.053 0.947 13 C -0.162 4.162 14 N -0.323 5.323 15 N -0.368 5.368 16 C 0.393 3.607 17 N -0.454 5.454 18 C 0.202 3.798 19 C -0.553 4.553 20 H 0.045 0.955 21 C 0.035 3.965 22 N -0.907 5.907 23 Si 0.931 3.069 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.292 1.292 27 C 0.118 3.882 28 C -0.157 4.157 29 C -0.157 4.157 30 C -0.174 4.174 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.045 0.955 45 H 0.265 0.735 46 H 0.031 0.969 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.106 0.894 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 4.992 -16.213 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.214 4.214 3 C 0.018 3.982 4 N -0.160 5.160 5 C -0.091 4.091 6 C -0.041 4.041 7 H 0.150 0.850 8 C -0.176 4.176 9 C -0.030 4.030 10 O -0.312 6.312 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.219 4.219 14 N -0.162 5.162 15 N -0.212 5.212 16 C 0.035 3.965 17 N -0.177 5.177 18 C 0.078 3.922 19 C -0.592 4.592 20 H 0.063 0.937 21 C -0.166 4.166 22 N -0.546 5.546 23 Si 0.758 3.242 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.218 1.218 27 C -0.009 4.009 28 C -0.176 4.176 29 C -0.194 4.194 30 C -0.211 4.211 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.128 0.872 51 H 0.124 0.876 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.402 5.121 -15.270 17.725 hybrid contribution -0.842 -1.353 1.083 1.927 sum 6.559 3.767 -14.187 16.078 Atomic orbital electron populations 1.23972 0.95718 1.02759 0.95156 1.22957 0.96452 0.97693 1.04331 1.21185 0.92599 0.97725 0.86664 1.46309 1.13283 1.44533 1.11853 1.24784 0.84034 1.02594 0.97727 1.21138 0.96834 0.93171 0.92959 0.85016 1.23218 0.91869 0.98825 1.03663 1.23784 0.99244 0.86620 0.93353 1.88919 1.19489 1.61193 1.61607 1.22622 0.81667 0.93642 0.99315 0.92832 1.22237 1.01393 0.98381 0.99910 1.73744 1.24647 1.15064 1.02709 1.74563 1.01298 1.20449 1.24899 1.22547 0.94288 0.96000 0.83625 1.59310 1.02808 1.18697 1.36910 1.19795 0.88385 0.88169 0.95884 1.21907 0.98402 1.16832 1.22062 0.93722 1.25339 0.94979 0.98266 0.98052 1.69968 1.06328 1.34902 1.43442 0.85975 0.77637 0.79514 0.81033 1.19703 1.19866 1.21794 1.21286 0.96503 0.92364 0.90761 1.22057 0.98813 0.91496 1.05218 1.23052 1.03124 0.94624 0.98555 1.23004 1.03674 1.02984 0.91438 0.87721 0.87877 0.87173 0.87918 0.84746 0.86386 0.91953 0.87748 0.89033 0.89359 0.91991 0.91133 0.94895 0.93759 0.92558 0.95070 0.91865 0.88581 0.88722 0.87210 0.87593 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 12.56 67.77 0.85 -3.02 16 2 C -0.20 -5.35 9.27 25.64 0.24 -5.11 16 3 C 0.14 3.59 6.16 85.63 0.53 4.12 16 4 N -0.47 -16.51 2.79 -518.91 -1.45 -17.96 16 5 C 0.18 6.24 6.36 137.64 0.88 7.12 16 6 C -0.02 -0.48 3.08 -10.55 -0.03 -0.52 16 7 H 0.13 2.21 6.68 -2.39 -0.02 2.20 16 8 C -0.14 -2.72 6.70 31.89 0.21 -2.50 16 9 C 0.05 0.82 7.67 72.66 0.56 1.38 16 10 O -0.39 -10.88 11.20 -148.98 -1.67 -12.54 16 11 C 0.09 2.36 3.74 30.97 0.12 2.48 16 12 H 0.05 1.95 7.68 -2.39 -0.02 1.93 16 13 C -0.16 -3.23 9.31 71.98 0.67 -2.56 16 14 N -0.32 -14.41 12.00 -49.54 -0.59 -15.00 16 15 N -0.37 -17.93 10.74 -58.01 -0.62 -18.56 16 16 C 0.39 17.17 5.73 260.11 1.49 18.66 16 17 N -0.45 -19.43 4.69 -710.35 -3.33 -22.76 16 18 C 0.20 9.90 5.00 85.56 0.43 10.33 16 19 C -0.55 -31.04 7.53 25.60 0.19 -30.84 16 20 H 0.04 2.73 6.24 -2.91 -0.02 2.71 16 21 C 0.03 1.94 5.46 84.65 0.46 2.40 16 22 N -0.91 -51.11 13.29 21.45 0.28 -50.83 16 23 Si 0.93 46.36 29.54 68.60 2.03 48.39 16 24 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 27 C 0.12 4.89 4.61 86.30 0.40 5.29 16 28 C -0.16 -5.38 5.69 -10.79 -0.06 -5.45 16 29 C -0.16 -4.09 10.18 30.60 0.31 -3.78 16 30 C -0.17 -4.89 10.25 30.60 0.31 -4.58 16 31 H 0.10 2.82 7.84 -2.91 -0.02 2.80 16 32 H 0.10 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.11 2.98 7.93 -2.91 -0.02 2.96 16 34 H 0.10 2.69 7.78 -2.38 -0.02 2.67 16 35 H 0.13 2.25 7.45 -2.39 -0.02 2.23 16 36 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.63 7.73 -2.39 -0.02 1.61 16 38 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.36 8.02 -2.38 -0.02 1.34 16 43 H 0.03 1.71 6.58 -2.39 -0.02 1.70 16 44 H 0.04 2.16 5.42 -2.39 -0.01 2.15 16 45 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.03 1.51 6.72 -2.39 -0.02 1.49 16 47 H 0.06 2.55 7.60 -2.39 -0.02 2.53 16 48 H 0.10 3.57 6.78 -2.39 -0.02 3.55 16 49 H 0.09 2.37 8.04 -2.39 -0.02 2.35 16 50 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 52 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.58 414.83 3.10 -70.48 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.90 Total: 25.36 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 7.55 Total: -6.58 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -5.71 Total: -125.10 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.67 Total: -12.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -73.58 3.10 -70.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592399149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.526 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds