Wall clock time and date at job start Wed Apr 1 2020 04:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00055 * 2 1 4 4 N 1.46504 * 109.47459 * 122.88732 * 3 2 1 5 5 C 1.36733 * 127.13944 * 275.84266 * 4 3 2 6 6 C 1.50704 * 126.34759 * 359.95938 * 5 4 3 7 7 H 1.08999 * 110.43496 * 359.19824 * 6 5 4 8 8 C 1.54813 * 110.48954 * 121.74151 * 6 5 4 9 9 C 1.54999 * 102.09079 * 139.55775 * 8 6 5 10 10 O 1.44376 * 103.48887 * 322.97940 * 9 8 6 11 11 C 1.43739 * 106.98177 * 40.06269 * 10 9 8 12 12 H 1.08996 * 109.88298 * 92.90373 * 11 10 9 13 13 C 1.52996 * 109.88120 * 214.06221 * 11 10 9 14 14 N 1.30291 * 107.31029 * 180.22713 * 5 4 3 15 15 N 1.28535 * 110.04858 * 359.76591 * 14 5 4 16 16 C 1.31219 * 109.86012 * 0.02562 * 15 14 5 17 17 N 1.38578 * 126.46824 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00019 * 108.19454 * 17 16 15 19 19 C 1.50700 * 109.47039 * 301.28819 * 18 17 16 20 20 H 1.08001 * 120.00148 * 4.96761 * 19 18 17 21 21 C 1.37873 * 120.00295 * 184.96344 * 19 18 17 22 22 N 1.31522 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46885 * 59.99826 * 23 21 19 25 25 H 1.48497 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46913 * 300.00212 * 23 21 19 27 27 C 1.46898 * 111.00660 * 344.23778 * 17 16 15 28 28 C 1.52996 * 109.47469 * 199.26812 * 27 17 16 29 29 C 1.52998 * 117.49802 * 244.07086 * 28 27 17 30 30 C 1.52998 * 60.00071 * 252.50648 * 29 28 27 31 31 H 1.07996 * 120.00084 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00159 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.00084 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47485 * 2.88898 * 3 2 1 35 35 H 1.09000 * 109.47264 * 242.88718 * 3 2 1 36 36 H 1.09001 * 110.90854 * 257.75666 * 8 6 5 37 37 H 1.09000 * 110.90282 * 21.35708 * 8 6 5 38 38 H 1.08997 * 110.61525 * 81.47753 * 9 8 6 39 39 H 1.09001 * 110.61726 * 204.31752 * 9 8 6 40 40 H 1.08999 * 109.47194 * 177.82578 * 13 11 10 41 41 H 1.09003 * 109.47305 * 297.82982 * 13 11 10 42 42 H 1.09007 * 109.47172 * 57.82969 * 13 11 10 43 43 H 1.09000 * 109.47458 * 61.28582 * 18 17 16 44 44 H 1.08996 * 109.47425 * 181.28710 * 18 17 16 45 45 H 0.97005 * 119.99639 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.47247 * 79.25982 * 27 17 16 47 47 H 1.09005 * 109.46796 * 319.26787 * 27 17 16 48 48 H 1.09002 * 115.54967 * 29.77767 * 28 27 17 49 49 H 1.09002 * 117.49692 * 0.02562 * 29 28 27 50 50 H 1.08998 * 117.49669 * 145.01948 * 29 28 27 51 51 H 1.08999 * 117.49931 * 252.50968 * 30 29 28 52 52 H 1.09006 * 117.51527 * 107.47771 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9572 1.3530 1.1599 5 6 2.6373 1.7347 2.4333 6 6 1.2847 2.1916 2.9156 7 1 0.5686 2.1944 2.0939 8 6 0.7850 1.2848 4.0666 9 6 0.1474 2.3124 5.0361 10 8 1.0229 3.4562 4.9380 11 6 1.3837 3.5911 3.5531 12 1 0.6956 4.2745 3.0557 13 6 2.8164 4.1153 3.4374 14 7 3.7201 1.6357 3.1512 15 7 4.6937 1.2159 2.4246 16 6 4.2809 1.0236 1.1940 17 7 5.0461 0.5754 0.1291 18 6 4.6855 -0.8012 -0.2357 19 6 4.8883 -1.7053 0.9528 20 1 5.1717 -1.2870 1.9074 21 6 4.7121 -3.0664 0.8217 22 7 4.3675 -3.5758 -0.3408 23 14 4.9629 -4.1870 2.2951 24 1 4.0167 -3.8051 3.3741 25 1 4.7148 -5.5951 1.8940 26 1 6.3570 -4.0516 2.7884 27 6 6.4801 0.6819 0.4293 28 6 7.2782 0.6493 -0.8755 29 6 8.2262 -0.5316 -1.0944 30 6 8.7914 0.8558 -0.7835 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3564 2.1329 0.0518 35 1 2.6508 1.3855 -0.9147 36 1 0.0400 0.5749 3.7072 37 1 1.6173 0.7658 4.5420 38 1 -0.8605 2.5716 4.7121 39 1 0.1338 1.9226 6.0540 40 1 3.0964 4.1784 2.3859 41 1 2.8790 5.1048 3.8902 42 1 3.4947 3.4359 3.9538 43 1 3.6401 -0.8338 -0.5427 44 1 5.3165 -1.1361 -1.0588 45 1 4.2432 -4.5335 -0.4330 46 1 6.7821 -0.1533 1.0611 47 1 6.6735 1.6198 0.9502 48 1 6.7673 1.0536 -1.7494 49 1 8.2808 -1.2853 -0.3089 50 1 8.3390 -0.9044 -2.1124 51 1 9.2761 1.3956 -1.5970 52 1 9.2183 1.0153 0.2067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592399151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:38 Heat of formation + Delta-G solvation = 98.928114 kcal Electronic energy + Delta-G solvation = -32761.466715 eV Core-core repulsion = 28764.628442 eV Total energy + Delta-G solvation = -3996.838273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.48587 -39.45957 -37.82754 -35.99300 -35.48238 -33.17404 -32.60186 -32.21323 -31.38338 -28.55342 -27.52201 -26.66410 -25.94512 -25.33415 -22.82568 -22.30045 -21.96075 -21.83527 -20.78590 -20.12892 -19.30165 -19.16512 -17.01288 -16.74508 -16.27509 -15.88621 -15.69631 -15.53883 -15.25811 -15.08470 -14.57280 -14.45693 -14.02810 -13.75742 -13.61947 -13.31152 -12.83215 -12.69389 -12.35367 -12.21175 -12.07969 -11.98272 -11.79582 -11.53123 -11.34991 -11.27204 -11.13192 -11.05683 -11.03965 -10.85204 -10.82303 -10.61470 -10.48197 -10.26594 -10.02488 -9.85381 -9.74401 -9.66694 -9.47884 -9.41221 -9.30680 -8.73791 -8.55193 -7.41851 -6.17976 -4.24329 2.07765 2.42014 3.00550 3.25046 3.28392 3.35140 3.50796 3.85116 4.23154 4.33855 4.41663 4.60076 4.61220 4.75142 4.85407 4.91525 5.00307 5.08654 5.16257 5.16576 5.30224 5.40095 5.41865 5.46377 5.51425 5.54002 5.57065 5.64046 5.75460 5.81504 5.89168 5.97487 5.99590 6.02918 6.08984 6.11931 6.19369 6.32946 6.38743 6.43982 6.53395 6.62477 6.68653 6.72382 6.76006 6.88741 6.93678 7.03931 7.26728 7.28924 7.58202 7.78312 8.01489 8.14629 8.84574 9.42620 9.46556 10.88255 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.004379 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.257300 B = 6392.005611 C = 7415.276401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 C 0.143 3.857 4 N -0.471 5.471 5 C 0.163 3.837 6 C -0.023 4.023 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.049 3.951 10 O -0.368 6.368 11 C 0.091 3.909 12 H 0.069 0.931 13 C -0.160 4.160 14 N -0.274 5.274 15 N -0.336 5.336 16 C 0.414 3.586 17 N -0.467 5.467 18 C 0.190 3.810 19 C -0.549 4.549 20 H 0.067 0.933 21 C 0.072 3.928 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.107 3.893 28 C -0.135 4.135 29 C -0.171 4.171 30 C -0.186 4.186 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.264 0.736 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 11.203 -0.196 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C 0.020 3.980 4 N -0.165 5.165 5 C -0.104 4.104 6 C -0.044 4.044 7 H 0.110 0.890 8 C -0.181 4.181 9 C -0.027 4.027 10 O -0.287 6.287 11 C 0.032 3.968 12 H 0.086 0.914 13 C -0.217 4.217 14 N -0.113 5.113 15 N -0.180 5.180 16 C 0.058 3.942 17 N -0.191 5.191 18 C 0.066 3.934 19 C -0.588 4.588 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.020 4.020 28 C -0.154 4.154 29 C -0.208 4.208 30 C -0.223 4.223 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.116 0.884 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.431 11.512 0.612 13.200 hybrid contribution -0.783 -1.694 -0.245 1.882 sum -7.214 9.818 0.368 12.188 Atomic orbital electron populations 1.23808 0.95489 1.01797 1.00854 1.23483 0.96298 0.99267 0.99199 1.20836 0.92592 0.96456 0.88162 1.45958 1.09393 1.51423 1.09734 1.23725 0.97966 1.07093 0.81642 1.20838 0.89460 0.95581 0.98551 0.89011 1.23205 1.01762 0.98027 0.95127 1.23504 0.93166 0.85504 1.00574 1.88902 1.66294 1.48418 1.25118 1.22606 0.97599 0.94089 0.82487 0.91368 1.22264 0.95567 1.01929 1.01922 1.73764 0.95850 1.15962 1.25734 1.74669 1.22577 1.22130 0.98610 1.22511 0.82170 0.97892 0.91605 1.59263 1.04547 1.26700 1.28580 1.20079 0.97499 0.78686 0.97138 1.21721 1.48128 0.92279 0.96696 0.91515 1.24853 0.94635 0.97981 0.95690 1.69922 1.46893 1.12823 1.23153 0.86702 0.79167 0.79453 0.83123 1.20294 1.21219 1.19970 1.21444 0.84017 1.02122 0.94451 1.22148 0.90619 1.02902 0.99691 1.22977 1.03873 0.91406 1.02527 1.22926 0.96281 1.00761 1.02365 0.88867 0.87924 0.84849 0.89547 0.87403 0.89950 0.89039 0.92326 0.88806 0.92499 0.92844 0.88076 0.94846 0.92814 0.92685 0.91217 0.91291 0.87839 0.88419 0.89443 0.89422 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.01 0.42 -1.73 16 2 C -0.16 -2.45 9.25 -36.03 -0.33 -2.78 16 3 C 0.14 2.03 5.69 -5.19 -0.03 2.00 16 4 N -0.47 -8.33 2.79 -115.37 -0.32 -8.65 16 5 C 0.16 2.82 5.13 -154.02 -0.79 2.03 16 6 C -0.02 -0.31 3.46 -90.24 -0.31 -0.62 16 7 H 0.09 1.02 7.16 -51.93 -0.37 0.64 16 8 C -0.14 -1.82 6.70 -24.72 -0.17 -1.98 16 9 C 0.05 0.54 7.72 38.21 0.29 0.84 16 10 O -0.37 -5.12 11.18 -35.23 -0.39 -5.51 16 11 C 0.09 1.18 4.05 -26.16 -0.11 1.07 16 12 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 13 C -0.16 -2.30 8.29 37.16 0.31 -1.99 16 14 N -0.27 -5.60 9.34 32.99 0.31 -5.29 16 15 N -0.34 -7.47 10.86 30.31 0.33 -7.14 16 16 C 0.41 8.57 5.71 -318.88 -1.82 6.75 16 17 N -0.47 -9.54 4.64 -175.89 -0.82 -10.36 16 18 C 0.19 4.42 4.97 -4.98 -0.02 4.39 16 19 C -0.55 -14.42 7.47 -34.44 -0.26 -14.67 16 20 H 0.07 1.88 6.53 -52.49 -0.34 1.53 16 21 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 22 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 23 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.11 2.08 4.66 -3.83 -0.02 2.07 16 28 C -0.13 -2.26 5.22 -90.62 -0.47 -2.73 16 29 C -0.17 -2.78 10.18 -26.73 -0.27 -3.05 16 30 C -0.19 -2.64 10.25 -26.73 -0.27 -2.91 16 31 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 32 H 0.10 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.13 2.58 6.49 -52.49 -0.34 2.23 16 34 H 0.09 0.94 7.16 -51.93 -0.37 0.57 16 35 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.42 7.76 -51.93 -0.40 1.02 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.83 7.60 -51.93 -0.39 0.44 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.76 5.67 -51.92 -0.29 1.46 16 43 H 0.03 0.80 5.22 -51.93 -0.27 0.53 16 44 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.07 1.55 6.36 -51.93 -0.33 1.22 16 47 H 0.07 1.33 7.64 -51.93 -0.40 0.93 16 48 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 49 H 0.10 1.76 8.03 -51.93 -0.42 1.34 16 50 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 52 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -29.95 410.22 -11.47 -41.43 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.52 Total: 8.01 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.96 Total: -11.51 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.24 Total: -55.12 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.39 Total: -5.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.95 -11.47 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592399151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.354 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds