Wall clock time and date at job start Wed Apr 1 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00055 * 2 1 4 4 N 1.46504 * 109.47459 * 122.88732 * 3 2 1 5 5 C 1.36733 * 127.13944 * 275.84266 * 4 3 2 6 6 C 1.50704 * 126.34759 * 359.95938 * 5 4 3 7 7 H 1.08999 * 110.43496 * 359.19824 * 6 5 4 8 8 C 1.54813 * 110.48954 * 121.74151 * 6 5 4 9 9 C 1.54999 * 102.09079 * 139.55775 * 8 6 5 10 10 O 1.44376 * 103.48887 * 322.97940 * 9 8 6 11 11 C 1.43739 * 106.98177 * 40.06269 * 10 9 8 12 12 H 1.08996 * 109.88298 * 92.90373 * 11 10 9 13 13 C 1.52996 * 109.88120 * 214.06221 * 11 10 9 14 14 N 1.30291 * 107.31029 * 180.22713 * 5 4 3 15 15 N 1.28535 * 110.04858 * 359.76591 * 14 5 4 16 16 C 1.31219 * 109.86012 * 0.02562 * 15 14 5 17 17 N 1.38578 * 126.46824 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00019 * 108.19454 * 17 16 15 19 19 C 1.50700 * 109.47039 * 301.28819 * 18 17 16 20 20 H 1.08001 * 120.00148 * 4.96761 * 19 18 17 21 21 C 1.37873 * 120.00295 * 184.96344 * 19 18 17 22 22 N 1.31522 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46885 * 59.99826 * 23 21 19 25 25 H 1.48497 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46913 * 300.00212 * 23 21 19 27 27 C 1.46898 * 111.00660 * 344.23778 * 17 16 15 28 28 C 1.52996 * 109.47469 * 199.26812 * 27 17 16 29 29 C 1.52998 * 117.49802 * 244.07086 * 28 27 17 30 30 C 1.52998 * 60.00071 * 252.50648 * 29 28 27 31 31 H 1.07996 * 120.00084 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00159 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.00084 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47485 * 2.88898 * 3 2 1 35 35 H 1.09000 * 109.47264 * 242.88718 * 3 2 1 36 36 H 1.09001 * 110.90854 * 257.75666 * 8 6 5 37 37 H 1.09000 * 110.90282 * 21.35708 * 8 6 5 38 38 H 1.08997 * 110.61525 * 81.47753 * 9 8 6 39 39 H 1.09001 * 110.61726 * 204.31752 * 9 8 6 40 40 H 1.08999 * 109.47194 * 177.82578 * 13 11 10 41 41 H 1.09003 * 109.47305 * 297.82982 * 13 11 10 42 42 H 1.09007 * 109.47172 * 57.82969 * 13 11 10 43 43 H 1.09000 * 109.47458 * 61.28582 * 18 17 16 44 44 H 1.08996 * 109.47425 * 181.28710 * 18 17 16 45 45 H 0.97005 * 119.99639 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.47247 * 79.25982 * 27 17 16 47 47 H 1.09005 * 109.46796 * 319.26787 * 27 17 16 48 48 H 1.09002 * 115.54967 * 29.77767 * 28 27 17 49 49 H 1.09002 * 117.49692 * 0.02562 * 29 28 27 50 50 H 1.08998 * 117.49669 * 145.01948 * 29 28 27 51 51 H 1.08999 * 117.49931 * 252.50968 * 30 29 28 52 52 H 1.09006 * 117.51527 * 107.47771 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9572 1.3530 1.1599 5 6 2.6373 1.7347 2.4333 6 6 1.2847 2.1916 2.9156 7 1 0.5686 2.1944 2.0939 8 6 0.7850 1.2848 4.0666 9 6 0.1474 2.3124 5.0361 10 8 1.0229 3.4562 4.9380 11 6 1.3837 3.5911 3.5531 12 1 0.6956 4.2745 3.0557 13 6 2.8164 4.1153 3.4374 14 7 3.7201 1.6357 3.1512 15 7 4.6937 1.2159 2.4246 16 6 4.2809 1.0236 1.1940 17 7 5.0461 0.5754 0.1291 18 6 4.6855 -0.8012 -0.2357 19 6 4.8883 -1.7053 0.9528 20 1 5.1717 -1.2870 1.9074 21 6 4.7121 -3.0664 0.8217 22 7 4.3675 -3.5758 -0.3408 23 14 4.9629 -4.1870 2.2951 24 1 4.0167 -3.8051 3.3741 25 1 4.7148 -5.5951 1.8940 26 1 6.3570 -4.0516 2.7884 27 6 6.4801 0.6819 0.4293 28 6 7.2782 0.6493 -0.8755 29 6 8.2262 -0.5316 -1.0944 30 6 8.7914 0.8558 -0.7835 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3564 2.1329 0.0518 35 1 2.6508 1.3855 -0.9147 36 1 0.0400 0.5749 3.7072 37 1 1.6173 0.7658 4.5420 38 1 -0.8605 2.5716 4.7121 39 1 0.1338 1.9226 6.0540 40 1 3.0964 4.1784 2.3859 41 1 2.8790 5.1048 3.8902 42 1 3.4947 3.4359 3.9538 43 1 3.6401 -0.8338 -0.5427 44 1 5.3165 -1.1361 -1.0588 45 1 4.2432 -4.5335 -0.4330 46 1 6.7821 -0.1533 1.0611 47 1 6.6735 1.6198 0.9502 48 1 6.7673 1.0536 -1.7494 49 1 8.2808 -1.2853 -0.3089 50 1 8.3390 -0.9044 -2.1124 51 1 9.2761 1.3956 -1.5970 52 1 9.2183 1.0153 0.2067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592399151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:37 Heat of formation + Delta-G solvation = 83.152878 kcal Electronic energy + Delta-G solvation = -32762.150780 eV Core-core repulsion = 28764.628442 eV Total energy + Delta-G solvation = -3997.522339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.94136 -40.49572 -39.33319 -37.30893 -36.87208 -34.75305 -34.15789 -33.51078 -32.39011 -30.10814 -29.26154 -27.85303 -27.12490 -26.96066 -24.57407 -23.46789 -23.14163 -23.04440 -22.13431 -21.39794 -20.70391 -20.40895 -18.76719 -18.10815 -17.59494 -17.43095 -16.89828 -16.74417 -16.63011 -16.32154 -16.14082 -15.82928 -15.41261 -15.00728 -14.81148 -14.72518 -14.46236 -13.91289 -13.64522 -13.51965 -13.33415 -13.25792 -13.21062 -13.14274 -12.95745 -12.71629 -12.51076 -12.42209 -12.32814 -12.27337 -12.11305 -12.07302 -11.95489 -11.85947 -11.73631 -11.24203 -11.18159 -10.91880 -10.72913 -10.65833 -10.64948 -10.49707 -10.32122 -9.08234 -8.26816 -6.38266 0.83605 1.11371 1.25128 1.26541 1.35136 1.72349 1.98027 2.29076 2.87827 2.90721 3.02909 3.12858 3.28175 3.59251 3.67973 3.81782 3.85654 3.94892 3.98243 4.05259 4.13483 4.19424 4.27161 4.29154 4.34349 4.44395 4.49124 4.55043 4.60202 4.65287 4.68686 4.82056 4.85715 4.87497 4.93563 4.96508 4.99436 5.05673 5.07593 5.12171 5.17044 5.20271 5.26140 5.32500 5.38729 5.46881 5.59389 5.66152 5.73918 5.77569 5.93769 5.99909 6.03679 6.51224 6.74777 7.30025 7.95144 8.77309 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.004379 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.257300 B = 6392.005611 C = 7415.276401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C 0.141 3.859 4 N -0.469 5.469 5 C 0.183 3.817 6 C -0.025 4.025 7 H 0.129 0.871 8 C -0.144 4.144 9 C 0.053 3.947 10 O -0.392 6.392 11 C 0.095 3.905 12 H 0.106 0.894 13 C -0.157 4.157 14 N -0.311 5.311 15 N -0.371 5.371 16 C 0.391 3.609 17 N -0.456 5.456 18 C 0.210 3.790 19 C -0.549 4.549 20 H 0.042 0.958 21 C 0.034 3.966 22 N -0.909 5.909 23 Si 0.933 3.067 24 H -0.286 1.286 25 H -0.272 1.272 26 H -0.277 1.277 27 C 0.116 3.884 28 C -0.149 4.149 29 C -0.182 4.182 30 C -0.153 4.153 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.035 0.965 45 H 0.266 0.734 46 H 0.033 0.967 47 H 0.067 0.933 48 H 0.111 0.889 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.119 0.881 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 12.999 -0.879 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.220 4.220 3 C 0.020 3.980 4 N -0.162 5.162 5 C -0.085 4.085 6 C -0.046 4.046 7 H 0.147 0.853 8 C -0.182 4.182 9 C -0.023 4.023 10 O -0.312 6.312 11 C 0.036 3.964 12 H 0.124 0.876 13 C -0.214 4.214 14 N -0.149 5.149 15 N -0.215 5.215 16 C 0.033 3.967 17 N -0.179 5.179 18 C 0.086 3.914 19 C -0.588 4.588 20 H 0.060 0.940 21 C -0.167 4.167 22 N -0.548 5.548 23 Si 0.760 3.240 24 H -0.212 1.212 25 H -0.197 1.197 26 H -0.202 1.202 27 C -0.012 4.012 28 C -0.168 4.168 29 C -0.219 4.219 30 C -0.190 4.190 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.129 0.871 49 H 0.090 0.910 50 H 0.118 0.882 51 H 0.137 0.863 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.267 13.307 -0.070 16.216 hybrid contribution -0.001 -2.232 0.047 2.232 sum -9.268 11.075 -0.023 14.442 Atomic orbital electron populations 1.24120 0.94034 1.03951 0.95548 1.23076 0.97345 0.97377 1.04185 1.21127 0.92660 0.97707 0.86535 1.46243 1.08681 1.50383 1.10892 1.24578 0.98761 1.04149 0.80996 1.21203 0.87569 0.95985 0.99875 0.85282 1.23193 1.01045 0.98700 0.95289 1.23681 0.94023 0.83909 1.00686 1.88880 1.67223 1.49373 1.25676 1.22695 0.97043 0.94113 0.82502 0.87605 1.22171 0.96432 1.01766 1.01062 1.73736 0.96791 1.17912 1.26500 1.74549 1.24340 1.22978 0.99643 1.22570 0.83719 0.99090 0.91314 1.59270 1.04976 1.24755 1.28880 1.19679 0.96629 0.79873 0.95267 1.21772 1.47488 0.92943 0.96634 0.93955 1.25375 0.94774 0.99008 0.97534 1.69977 1.47636 1.13092 1.24093 0.85997 0.78528 0.78824 0.80635 1.21184 1.19670 1.20229 1.21327 0.83989 1.00313 0.95537 1.22095 0.92026 1.04233 0.98410 1.22939 1.04803 0.91766 1.02415 1.23024 0.93868 0.98528 1.03610 0.84539 0.87653 0.90354 0.84884 0.88155 0.87861 0.93010 0.88732 0.88176 0.93072 0.91800 0.91549 0.95260 0.94678 0.92480 0.94884 0.91478 0.87089 0.91033 0.88150 0.86268 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 14.32 67.78 0.97 -1.79 16 2 C -0.20 -5.79 9.25 25.65 0.24 -5.55 16 3 C 0.14 3.78 5.69 85.63 0.49 4.26 16 4 N -0.47 -16.60 2.79 -518.92 -1.45 -18.05 16 5 C 0.18 6.30 5.13 137.64 0.71 7.00 16 6 C -0.03 -0.60 3.46 -10.55 -0.04 -0.64 16 7 H 0.13 2.11 7.16 -2.39 -0.02 2.09 16 8 C -0.14 -3.35 6.70 31.90 0.21 -3.13 16 9 C 0.05 0.99 7.72 72.67 0.56 1.55 16 10 O -0.39 -9.90 11.18 -148.98 -1.67 -11.57 16 11 C 0.09 2.16 4.05 30.97 0.13 2.29 16 12 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 13 C -0.16 -4.39 8.29 71.98 0.60 -3.80 16 14 N -0.31 -13.27 9.34 -49.54 -0.46 -13.73 16 15 N -0.37 -17.52 10.86 -58.01 -0.63 -18.15 16 16 C 0.39 16.91 5.71 260.11 1.49 18.40 16 17 N -0.46 -19.61 4.64 -710.39 -3.30 -22.91 16 18 C 0.21 10.36 4.97 85.56 0.43 10.78 16 19 C -0.55 -30.47 7.47 25.60 0.19 -30.28 16 20 H 0.04 2.54 6.53 -2.91 -0.02 2.52 16 21 C 0.03 1.90 5.46 84.65 0.46 2.36 16 22 N -0.91 -51.33 13.29 21.45 0.28 -51.05 16 23 Si 0.93 45.64 29.54 68.60 2.03 47.66 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 27 C 0.12 4.79 4.66 86.30 0.40 5.19 16 28 C -0.15 -5.10 5.22 -10.80 -0.06 -5.15 16 29 C -0.18 -6.07 10.18 30.59 0.31 -5.76 16 30 C -0.15 -4.20 10.25 30.59 0.31 -3.89 16 31 H 0.14 1.59 7.84 -2.91 -0.02 1.57 16 32 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.08 3.17 6.49 -2.91 -0.02 3.16 16 34 H 0.13 2.28 7.16 -2.39 -0.02 2.26 16 35 H 0.10 2.82 8.10 -2.39 -0.02 2.80 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.63 7.76 -2.39 -0.02 1.61 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.45 7.60 -2.39 -0.02 1.44 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.37 5.67 -2.38 -0.01 2.36 16 43 H 0.03 1.48 5.22 -2.39 -0.01 1.47 16 44 H 0.04 1.85 7.51 -2.39 -0.02 1.83 16 45 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 46 H 0.03 1.59 6.36 -2.39 -0.02 1.57 16 47 H 0.07 2.75 7.64 -2.38 -0.02 2.73 16 48 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 49 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 50 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 51 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 52 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -71.84 410.22 3.11 -68.73 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.90 Total: 27.21 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 7.40 Total: -8.15 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -5.55 Total: -123.89 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.67 Total: -11.57 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.84 3.11 -68.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592399151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.882 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds