Wall clock time and date at job start Wed Apr 1 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.61141 * 2 1 4 4 C 1.53378 * 109.60990 * 239.66083 * 2 1 3 5 5 N 1.46961 * 108.63546 * 190.83350 * 4 2 1 6 6 C 1.34779 * 120.59376 * 235.20123 * 5 4 2 7 7 O 1.21274 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99791 * 179.72229 * 6 5 4 9 9 C 1.50702 * 109.47157 * 180.27395 * 8 6 5 10 10 N 1.31077 * 125.95934 * 90.02120 * 9 8 6 11 11 N 1.40290 * 108.26827 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.08983 * 179.97438 * 11 10 9 13 13 C 1.34324 * 107.81836 * 359.94299 * 11 10 9 14 14 C 1.35748 * 107.84703 * 359.82916 * 13 11 10 15 15 C 1.50843 * 124.10950 * 179.43867 * 14 13 11 16 16 C 1.53369 * 108.44365 * 344.03297 * 15 14 13 17 17 C 1.53106 * 109.50376 * 49.70973 * 16 15 14 18 18 C 1.50828 * 128.03295 * 180.17912 * 13 11 10 19 19 C 1.46974 * 118.81206 * 55.47337 * 5 4 2 20 20 C 1.53814 * 108.39845 * 304.48531 * 19 5 4 21 21 H 1.08994 * 109.66907 * 169.38626 * 20 19 5 22 22 C 1.52997 * 109.74042 * 289.84713 * 20 19 5 23 23 N 1.46959 * 108.57706 * 49.63805 * 20 19 5 24 24 C 1.36942 * 120.59448 * 124.62666 * 23 20 19 25 25 H 1.07997 * 120.00238 * 208.70689 * 24 23 20 26 26 C 1.38812 * 119.99809 * 28.70329 * 24 23 20 27 27 N 1.31620 * 120.00119 * 17.31555 * 26 24 23 28 28 Si 1.86795 * 120.00011 * 197.31502 * 26 24 23 29 29 H 1.48506 * 109.47151 * 60.00067 * 28 26 24 30 30 H 1.48500 * 109.47354 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47104 * 300.00111 * 28 26 24 32 32 H 1.08991 * 109.47145 * 180.34325 * 1 2 3 33 33 H 1.08998 * 109.46671 * 300.34474 * 1 2 3 34 34 H 1.08997 * 109.47108 * 60.33828 * 1 2 3 35 35 H 1.08991 * 109.60681 * 71.08595 * 4 2 1 36 36 H 1.09002 * 109.60739 * 310.57518 * 4 2 1 37 37 H 1.09002 * 109.47752 * 300.27435 * 8 6 5 38 38 H 1.08999 * 109.47510 * 60.27646 * 8 6 5 39 39 H 1.08995 * 109.84065 * 224.17924 * 15 14 13 40 40 H 1.08994 * 109.48817 * 103.68244 * 15 14 13 41 41 H 1.09002 * 109.46609 * 289.70089 * 16 15 14 42 42 H 1.08995 * 109.45800 * 169.71713 * 16 15 14 43 43 H 1.09002 * 109.46673 * 169.69360 * 17 16 15 44 44 H 1.09003 * 109.46148 * 49.71989 * 17 16 15 45 45 H 1.09000 * 109.68324 * 283.13953 * 18 13 11 46 46 H 1.09004 * 109.67878 * 43.68873 * 18 13 11 47 47 H 1.08997 * 109.60619 * 64.26912 * 19 5 4 48 48 H 1.08998 * 109.60504 * 184.77604 * 19 5 4 49 49 H 1.09001 * 109.47160 * 179.15902 * 22 20 19 50 50 H 1.09001 * 109.47481 * 299.16104 * 22 20 19 51 51 H 1.08998 * 109.47222 * 59.15689 * 22 20 19 52 52 H 0.96994 * 119.99838 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2470 5 7 3.4908 -0.9473 -1.1004 6 6 4.3492 -0.5103 -2.0431 7 8 3.9304 0.0686 -3.0230 8 6 5.8299 -0.7350 -1.8761 9 6 6.5630 -0.1498 -3.0555 10 7 7.0207 1.0751 -3.1467 11 7 7.6369 1.2223 -4.3984 12 1 8.0621 2.0265 -4.7349 13 6 7.5338 0.0508 -5.0476 14 6 6.8771 -0.8177 -4.2369 15 6 6.5510 -2.2422 -4.6108 16 6 6.7092 -2.3938 -6.1287 17 6 8.0630 -1.8241 -6.5610 18 6 8.0431 -0.2967 -6.4241 19 6 3.9835 -1.6552 0.0897 20 6 3.4693 -0.9204 1.3393 21 1 3.6602 -1.5256 2.2254 22 6 4.1801 0.4276 1.4753 23 7 2.0233 -0.7030 1.1926 24 6 1.1510 -1.1477 2.1500 25 1 0.1412 -1.4168 1.8774 26 6 1.5647 -1.2528 3.4709 27 7 2.6481 -0.6230 3.8733 28 14 0.5838 -2.2880 4.6773 29 1 0.5406 -3.6943 4.2020 30 1 1.2305 -2.2373 6.0131 31 1 -0.7991 -1.7561 4.7758 32 1 -0.3633 -1.0276 0.0062 33 1 -0.3632 0.5192 0.8869 34 1 -0.3633 0.5086 -0.8930 35 1 1.8540 -0.1220 -2.1313 36 1 1.5384 -1.6902 -1.3438 37 1 6.1700 -0.2512 -0.9604 38 1 6.0308 -1.8048 -1.8179 39 1 5.5256 -2.4746 -4.3235 40 1 7.2372 -2.9182 -4.1007 41 1 5.9093 -1.8520 -6.6333 42 1 6.6575 -3.4494 -6.3955 43 1 8.2555 -2.0932 -7.5996 44 1 8.8491 -2.2353 -5.9277 45 1 7.3829 0.1309 -7.1787 46 1 9.0515 0.0966 -6.5525 47 1 3.6120 -2.6798 0.0857 48 1 5.0735 -1.6586 0.0880 49 1 3.8018 0.9509 2.3534 50 1 5.2522 0.2638 1.5838 51 1 3.9927 1.0286 0.5854 52 1 2.9370 -0.6962 4.7963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880457625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:08 Heat of formation + Delta-G solvation = 52.853547 kcal Electronic energy + Delta-G solvation = -31978.618755 eV Core-core repulsion = 27979.782539 eV Total energy + Delta-G solvation = -3998.836216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.58905 -39.58399 -37.26491 -36.62074 -33.99579 -33.54126 -32.69118 -31.10421 -30.28456 -29.43360 -28.53931 -27.82321 -26.13334 -25.25209 -23.68054 -23.57050 -22.21989 -20.97561 -20.63687 -19.26253 -18.81631 -18.22580 -17.54612 -16.92764 -15.82611 -15.61809 -15.29981 -15.15060 -14.84102 -14.25335 -14.04465 -13.99502 -13.96480 -13.70071 -13.54587 -13.30880 -13.17146 -12.92045 -12.86219 -12.54468 -12.10322 -12.02891 -11.84621 -11.66024 -11.36985 -11.14056 -11.11766 -11.02969 -11.00602 -10.75771 -10.72904 -10.62964 -10.55018 -10.37998 -10.14192 -10.06581 -9.77049 -9.59176 -9.45362 -9.04182 -8.49303 -8.24628 -8.09616 -6.62511 -5.80677 -3.24181 1.87793 2.68941 2.81295 3.09031 3.36811 3.43098 3.44029 3.63963 4.37210 4.46861 4.53909 4.63383 4.66358 5.00578 5.05141 5.07447 5.17574 5.23263 5.29509 5.36169 5.37618 5.47823 5.56483 5.59581 5.70181 5.76287 5.80981 5.81411 5.91668 5.96704 6.06514 6.11396 6.14863 6.15950 6.22564 6.27695 6.28856 6.42285 6.48671 6.64316 6.67872 6.79722 6.89957 6.95463 7.06503 7.16241 7.30721 7.54884 7.66766 7.74402 7.81104 8.00673 8.42211 8.66556 9.18924 9.80888 10.38361 11.26431 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002603 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.884138 B =10752.366382 C =10887.348245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.155 3.845 3 H 0.031 0.969 4 C 0.103 3.897 5 N -0.594 5.594 6 C 0.518 3.482 7 O -0.550 6.550 8 C -0.063 4.063 9 C 0.113 3.887 10 N -0.283 5.283 11 N -0.471 5.471 12 H 0.435 0.565 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.042 4.042 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.055 4.055 19 C 0.083 3.917 20 C 0.179 3.821 21 H 0.107 0.893 22 C -0.143 4.143 23 N -0.581 5.581 24 C -0.251 4.251 25 H 0.071 0.929 26 C 0.004 3.996 27 N -0.898 5.898 28 Si 0.900 3.100 29 H -0.285 1.285 30 H -0.292 1.292 31 H -0.284 1.284 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.027 0.973 51 H 0.024 0.976 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -3.177 -17.768 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.022 4.022 5 N -0.326 5.326 6 C 0.305 3.695 7 O -0.428 6.428 8 C -0.104 4.104 9 C -0.053 4.053 10 N -0.106 5.106 11 N -0.178 5.178 12 H 0.278 0.722 13 C -0.049 4.049 14 C -0.233 4.233 15 C -0.080 4.080 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.094 4.094 19 C -0.041 4.041 20 C 0.071 3.929 21 H 0.125 0.875 22 C -0.202 4.202 23 N -0.303 5.303 24 C -0.381 4.381 25 H 0.089 0.911 26 C -0.195 4.195 27 N -0.542 5.542 28 Si 0.730 3.270 29 H -0.211 1.211 30 H -0.218 1.218 31 H -0.210 1.210 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.047 0.953 51 H 0.043 0.957 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.480 -1.745 -17.491 20.995 hybrid contribution -0.258 -0.648 0.312 0.764 sum 11.222 -2.393 -17.179 20.658 Atomic orbital electron populations 1.21753 0.95367 1.01607 1.00547 1.20783 0.93200 0.94076 0.87169 0.95185 1.22224 0.79377 1.00590 0.99959 1.47970 1.07145 1.56380 1.21130 1.20170 0.87703 0.78976 0.82680 1.90655 1.79121 1.42586 1.30460 1.20030 0.91986 1.02359 0.96053 1.21260 0.97360 0.91222 0.95495 1.77480 1.16391 1.18186 0.98534 1.45871 1.47352 1.11451 1.13151 0.72161 1.20820 1.00966 0.87061 0.96062 1.19665 1.10140 0.98300 0.95146 1.19972 1.01448 0.91306 0.95253 1.21589 0.97118 1.00893 0.96053 1.21532 0.98480 0.93416 1.01569 1.20337 1.00903 0.97663 0.90532 1.22779 0.98126 0.96350 0.86817 1.20808 0.83226 0.94829 0.94022 0.87519 1.22028 0.97372 0.99549 1.01246 1.44140 1.01808 1.64397 1.19987 1.19146 0.95550 1.36800 0.86577 0.91142 1.25039 0.98187 0.99531 0.96705 1.69989 1.25752 1.42368 1.16135 0.86412 0.79542 0.80639 0.80385 1.21127 1.21767 1.21029 0.92556 0.91714 0.94087 0.90289 0.92065 0.87342 0.87337 0.91055 0.91444 0.91672 0.91457 0.91139 0.91356 0.89913 0.90454 0.91753 0.91028 0.90483 0.95347 0.95674 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.94 37.16 0.30 -2.23 16 2 C 0.15 3.22 3.22 -67.48 -0.22 3.00 16 3 H 0.03 0.69 7.41 -51.93 -0.38 0.31 16 4 C 0.10 1.94 5.90 -3.59 -0.02 1.91 16 5 N -0.59 -10.80 2.58 -172.21 -0.45 -11.25 16 6 C 0.52 9.39 7.69 -10.99 -0.08 9.31 16 7 O -0.55 -11.71 15.44 5.56 0.09 -11.63 16 8 C -0.06 -0.93 4.47 -29.04 -0.13 -1.06 16 9 C 0.11 1.77 5.71 -82.52 -0.47 1.30 16 10 N -0.28 -4.62 12.71 33.60 0.43 -4.19 16 11 N -0.47 -5.86 7.34 33.48 0.25 -5.62 16 12 H 0.44 3.87 8.96 -182.46 -1.64 2.23 16 13 C 0.08 0.93 7.08 -82.33 -0.58 0.35 16 14 C -0.22 -2.97 5.91 -105.05 -0.62 -3.59 16 15 C -0.04 -0.45 6.06 -27.62 -0.17 -0.62 16 16 C -0.12 -1.01 5.90 -26.49 -0.16 -1.17 16 17 C -0.11 -0.78 5.90 -26.49 -0.16 -0.93 16 18 C -0.06 -0.42 6.30 -27.64 -0.17 -0.59 16 19 C 0.08 1.46 5.92 -3.36 -0.02 1.44 16 20 C 0.18 3.85 2.35 -67.26 -0.16 3.69 16 21 H 0.11 2.59 6.01 -51.93 -0.31 2.27 16 22 C -0.14 -3.07 8.96 37.16 0.33 -2.73 16 23 N -0.58 -13.48 2.68 -156.76 -0.42 -13.90 16 24 C -0.25 -6.36 8.60 -15.06 -0.13 -6.49 16 25 H 0.07 1.76 6.20 -52.49 -0.33 1.43 16 26 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 27 N -0.90 -24.13 10.16 55.49 0.56 -23.57 16 28 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 30 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 31 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 32 H 0.06 1.04 7.32 -51.93 -0.38 0.66 16 33 H 0.06 1.30 7.72 -51.93 -0.40 0.90 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 36 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 37 H 0.11 1.57 7.73 -51.93 -0.40 1.17 16 38 H 0.11 1.30 7.83 -51.93 -0.41 0.89 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.48 8.11 -51.93 -0.42 0.05 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.05 5.89 -51.93 -0.31 0.75 16 49 H 0.08 1.90 7.20 -51.93 -0.37 1.53 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.02 0.54 7.02 -51.93 -0.36 0.17 16 52 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -31.96 396.86 -11.00 -42.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -9.86 Total: 3.91 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.55 Total: 1.62 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.37 Total: -58.52 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.96 -11.00 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.810 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds