Wall clock time and date at job start Wed Apr 1 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.61141 * 2 1 4 4 C 1.53378 * 109.60990 * 239.66083 * 2 1 3 5 5 N 1.46961 * 108.63546 * 190.83350 * 4 2 1 6 6 C 1.34779 * 120.59376 * 235.20123 * 5 4 2 7 7 O 1.21274 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99791 * 179.72229 * 6 5 4 9 9 C 1.50702 * 109.47157 * 180.27395 * 8 6 5 10 10 N 1.31077 * 125.95934 * 90.02120 * 9 8 6 11 11 N 1.40290 * 108.26827 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.08983 * 179.97438 * 11 10 9 13 13 C 1.34324 * 107.81836 * 359.94299 * 11 10 9 14 14 C 1.35748 * 107.84703 * 359.82916 * 13 11 10 15 15 C 1.50843 * 124.10950 * 179.43867 * 14 13 11 16 16 C 1.53369 * 108.44365 * 344.03297 * 15 14 13 17 17 C 1.53106 * 109.50376 * 49.70973 * 16 15 14 18 18 C 1.50828 * 128.03295 * 180.17912 * 13 11 10 19 19 C 1.46974 * 118.81206 * 55.47337 * 5 4 2 20 20 C 1.53814 * 108.39845 * 304.48531 * 19 5 4 21 21 H 1.08994 * 109.66907 * 169.38626 * 20 19 5 22 22 C 1.52997 * 109.74042 * 289.84713 * 20 19 5 23 23 N 1.46959 * 108.57706 * 49.63805 * 20 19 5 24 24 C 1.36942 * 120.59448 * 124.62666 * 23 20 19 25 25 H 1.07997 * 120.00238 * 208.70689 * 24 23 20 26 26 C 1.38812 * 119.99809 * 28.70329 * 24 23 20 27 27 N 1.31620 * 120.00119 * 17.31555 * 26 24 23 28 28 Si 1.86795 * 120.00011 * 197.31502 * 26 24 23 29 29 H 1.48506 * 109.47151 * 60.00067 * 28 26 24 30 30 H 1.48500 * 109.47354 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47104 * 300.00111 * 28 26 24 32 32 H 1.08991 * 109.47145 * 180.34325 * 1 2 3 33 33 H 1.08998 * 109.46671 * 300.34474 * 1 2 3 34 34 H 1.08997 * 109.47108 * 60.33828 * 1 2 3 35 35 H 1.08991 * 109.60681 * 71.08595 * 4 2 1 36 36 H 1.09002 * 109.60739 * 310.57518 * 4 2 1 37 37 H 1.09002 * 109.47752 * 300.27435 * 8 6 5 38 38 H 1.08999 * 109.47510 * 60.27646 * 8 6 5 39 39 H 1.08995 * 109.84065 * 224.17924 * 15 14 13 40 40 H 1.08994 * 109.48817 * 103.68244 * 15 14 13 41 41 H 1.09002 * 109.46609 * 289.70089 * 16 15 14 42 42 H 1.08995 * 109.45800 * 169.71713 * 16 15 14 43 43 H 1.09002 * 109.46673 * 169.69360 * 17 16 15 44 44 H 1.09003 * 109.46148 * 49.71989 * 17 16 15 45 45 H 1.09000 * 109.68324 * 283.13953 * 18 13 11 46 46 H 1.09004 * 109.67878 * 43.68873 * 18 13 11 47 47 H 1.08997 * 109.60619 * 64.26912 * 19 5 4 48 48 H 1.08998 * 109.60504 * 184.77604 * 19 5 4 49 49 H 1.09001 * 109.47160 * 179.15902 * 22 20 19 50 50 H 1.09001 * 109.47481 * 299.16104 * 22 20 19 51 51 H 1.08998 * 109.47222 * 59.15689 * 22 20 19 52 52 H 0.96994 * 119.99838 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2470 5 7 3.4908 -0.9473 -1.1004 6 6 4.3492 -0.5103 -2.0431 7 8 3.9304 0.0686 -3.0230 8 6 5.8299 -0.7350 -1.8761 9 6 6.5630 -0.1498 -3.0555 10 7 7.0207 1.0751 -3.1467 11 7 7.6369 1.2223 -4.3984 12 1 8.0621 2.0265 -4.7349 13 6 7.5338 0.0508 -5.0476 14 6 6.8771 -0.8177 -4.2369 15 6 6.5510 -2.2422 -4.6108 16 6 6.7092 -2.3938 -6.1287 17 6 8.0630 -1.8241 -6.5610 18 6 8.0431 -0.2967 -6.4241 19 6 3.9835 -1.6552 0.0897 20 6 3.4693 -0.9204 1.3393 21 1 3.6602 -1.5256 2.2254 22 6 4.1801 0.4276 1.4753 23 7 2.0233 -0.7030 1.1926 24 6 1.1510 -1.1477 2.1500 25 1 0.1412 -1.4168 1.8774 26 6 1.5647 -1.2528 3.4709 27 7 2.6481 -0.6230 3.8733 28 14 0.5838 -2.2880 4.6773 29 1 0.5406 -3.6943 4.2020 30 1 1.2305 -2.2373 6.0131 31 1 -0.7991 -1.7561 4.7758 32 1 -0.3633 -1.0276 0.0062 33 1 -0.3632 0.5192 0.8869 34 1 -0.3633 0.5086 -0.8930 35 1 1.8540 -0.1220 -2.1313 36 1 1.5384 -1.6902 -1.3438 37 1 6.1700 -0.2512 -0.9604 38 1 6.0308 -1.8048 -1.8179 39 1 5.5256 -2.4746 -4.3235 40 1 7.2372 -2.9182 -4.1007 41 1 5.9093 -1.8520 -6.6333 42 1 6.6575 -3.4494 -6.3955 43 1 8.2555 -2.0932 -7.5996 44 1 8.8491 -2.2353 -5.9277 45 1 7.3829 0.1309 -7.1787 46 1 9.0515 0.0966 -6.5525 47 1 3.6120 -2.6798 0.0857 48 1 5.0735 -1.6586 0.0880 49 1 3.8018 0.9509 2.3534 50 1 5.2522 0.2638 1.5838 51 1 3.9927 1.0286 0.5854 52 1 2.9370 -0.6962 4.7963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880457625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:06 Heat of formation + Delta-G solvation = 34.333189 kcal Electronic energy + Delta-G solvation = -31979.421858 eV Core-core repulsion = 27979.782539 eV Total energy + Delta-G solvation = -3999.639319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.55856 -41.07476 -38.88894 -37.33999 -35.65070 -34.77503 -34.18323 -32.93175 -31.18081 -30.32727 -29.82610 -29.38806 -27.65190 -26.86044 -25.36281 -24.41056 -22.97502 -22.62645 -21.92936 -20.78227 -19.76996 -19.58805 -18.47981 -18.39781 -17.54845 -17.07030 -16.75163 -16.37981 -16.20129 -15.78667 -15.38662 -15.18963 -15.02249 -14.76127 -14.66804 -14.57868 -14.30809 -14.25197 -13.92049 -13.83642 -13.52306 -13.45478 -13.08719 -12.91090 -12.85999 -12.78481 -12.73414 -12.41140 -12.35843 -12.27022 -11.97777 -11.75540 -11.73818 -11.68818 -11.54199 -11.42481 -11.33850 -11.30427 -10.88850 -10.42484 -10.20883 -9.68491 -9.18579 -8.49144 -7.76415 -5.22047 0.90598 1.52758 1.54990 1.59697 1.61087 1.68308 1.92411 2.26083 2.58456 3.37188 3.52822 3.56613 3.68325 3.72106 3.95122 4.06844 4.13630 4.16823 4.29240 4.33199 4.36267 4.39692 4.51413 4.53181 4.62664 4.64758 4.66702 4.69166 4.73827 4.81549 4.81752 4.85783 4.86946 4.94118 5.05210 5.10293 5.11132 5.21700 5.27245 5.31694 5.34996 5.40553 5.44661 5.52630 5.54260 5.71910 5.75596 5.81322 5.90007 6.48076 6.49148 6.54235 6.73527 7.21836 7.25598 7.92787 8.46749 9.27798 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002603 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.884138 B =10752.366382 C =10887.348245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.003 0.997 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.519 3.481 7 O -0.584 6.584 8 C -0.057 4.057 9 C 0.092 3.908 10 N -0.331 5.331 11 N -0.466 5.466 12 H 0.448 0.552 13 C 0.089 3.911 14 C -0.246 4.246 15 C -0.041 4.041 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.054 4.054 19 C 0.095 3.905 20 C 0.175 3.825 21 H 0.082 0.918 22 C -0.127 4.127 23 N -0.594 5.594 24 C -0.254 4.254 25 H 0.073 0.927 26 C -0.043 4.043 27 N -0.922 5.922 28 Si 0.958 3.042 29 H -0.279 1.279 30 H -0.299 1.299 31 H -0.284 1.284 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.039 0.961 50 H 0.051 0.949 51 H 0.015 0.985 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -4.823 -20.002 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 H 0.021 0.979 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.308 3.692 7 O -0.465 6.465 8 C -0.098 4.098 9 C -0.074 4.074 10 N -0.155 5.155 11 N -0.174 5.174 12 H 0.293 0.707 13 C -0.042 4.042 14 C -0.257 4.257 15 C -0.080 4.080 16 C -0.156 4.156 17 C -0.146 4.146 18 C -0.093 4.093 19 C -0.028 4.028 20 C 0.068 3.932 21 H 0.100 0.900 22 C -0.186 4.186 23 N -0.317 5.317 24 C -0.384 4.384 25 H 0.090 0.910 26 C -0.239 4.239 27 N -0.568 5.568 28 Si 0.787 3.213 29 H -0.205 1.205 30 H -0.226 1.226 31 H -0.210 1.210 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.123 0.877 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.035 0.965 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.729 -3.394 -19.737 23.730 hybrid contribution -0.643 -0.040 0.941 1.141 sum 12.086 -3.434 -18.796 22.609 Atomic orbital electron populations 1.21664 0.93831 1.01936 1.00970 1.20853 0.94561 0.92711 0.87273 0.97886 1.22032 0.80158 1.00651 0.98432 1.48017 1.06931 1.56420 1.21349 1.20700 0.88923 0.77766 0.81834 1.90632 1.79946 1.43997 1.31903 1.20052 0.89252 1.04295 0.96231 1.21473 0.97838 0.91550 0.96490 1.77365 1.18223 1.19060 1.00807 1.45911 1.46784 1.12461 1.12281 0.70664 1.21506 0.99355 0.86063 0.97234 1.20061 1.10905 0.99841 0.94858 1.20025 1.00608 0.90161 0.97177 1.21597 0.97810 1.02004 0.94141 1.21550 0.97355 0.92580 1.03113 1.20551 1.02310 0.98468 0.87968 1.22647 0.99998 0.95798 0.84405 1.20784 0.82715 0.94592 0.95080 0.90038 1.21835 0.98703 0.99167 0.98884 1.44380 1.02389 1.64693 1.20220 1.19406 0.95969 1.35891 0.87089 0.90956 1.25651 0.99314 1.00798 0.98110 1.70145 1.27105 1.43661 1.15851 0.85498 0.78123 0.79473 0.78163 1.20506 1.22603 1.21024 0.92130 0.93620 0.91363 0.90604 0.91012 0.87088 0.84314 0.92888 0.90086 0.92948 0.89757 0.88630 0.91058 0.88936 0.87902 0.90821 0.87724 0.94217 0.92978 0.96540 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.94 71.98 0.57 -4.10 16 2 C 0.15 6.40 3.22 45.03 0.15 6.55 16 3 H 0.00 0.16 7.41 -2.39 -0.02 0.14 16 4 C 0.11 4.15 5.90 86.42 0.51 4.66 16 5 N -0.60 -21.14 2.58 -817.14 -2.11 -23.25 16 6 C 0.52 18.50 7.69 87.66 0.67 19.17 16 7 O -0.58 -24.96 15.44 -3.01 -0.05 -25.01 16 8 C -0.06 -1.63 4.47 29.10 0.13 -1.50 16 9 C 0.09 2.81 5.71 42.93 0.24 3.06 16 10 N -0.33 -10.73 12.71 -47.62 -0.61 -11.34 16 11 N -0.47 -11.13 7.34 -47.99 -0.35 -11.48 16 12 H 0.45 7.47 8.96 -213.20 -1.91 5.56 16 13 C 0.09 1.91 7.08 41.64 0.29 2.20 16 14 C -0.25 -6.28 5.91 -20.14 -0.12 -6.40 16 15 C -0.04 -0.83 6.06 30.02 0.18 -0.65 16 16 C -0.12 -1.71 5.90 30.75 0.18 -1.53 16 17 C -0.11 -1.11 5.90 30.75 0.18 -0.93 16 18 C -0.05 -0.65 6.30 30.01 0.19 -0.46 16 19 C 0.10 3.20 5.92 86.56 0.51 3.72 16 20 C 0.18 7.58 2.35 45.18 0.11 7.69 16 21 H 0.08 3.99 6.01 -2.39 -0.01 3.98 16 22 C -0.13 -5.53 8.96 71.98 0.64 -4.89 16 23 N -0.59 -27.80 2.68 -649.88 -1.74 -29.55 16 24 C -0.25 -12.91 8.60 84.03 0.72 -12.19 16 25 H 0.07 3.60 6.20 -2.91 -0.02 3.58 16 26 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 27 N -0.92 -50.70 10.16 21.65 0.22 -50.48 16 28 Si 0.96 42.99 29.59 68.60 2.03 45.02 16 29 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 30 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 31 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 32 H 0.06 2.18 7.32 -2.39 -0.02 2.16 16 33 H 0.04 1.84 7.72 -2.39 -0.02 1.82 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 2.88 6.99 -2.39 -0.02 2.86 16 36 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 37 H 0.11 3.09 7.73 -2.39 -0.02 3.07 16 38 H 0.14 3.01 7.83 -2.39 -0.02 2.99 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 0.89 8.11 -2.39 -0.02 0.87 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 46 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.10 2.83 5.89 -2.39 -0.01 2.81 16 49 H 0.04 2.01 7.20 -2.39 -0.02 1.99 16 50 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.02 0.70 7.02 -2.39 -0.02 0.69 16 52 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -71.37 396.86 1.99 -69.38 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.98 Total: 24.13 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.59 Total: 12.58 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -4.59 Total: -126.09 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.37 1.99 -69.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.712 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds