Wall clock time and date at job start Wed Apr 1 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.75047 * 2 1 4 4 C 1.53374 * 109.60862 * 120.42606 * 2 1 3 5 5 N 1.46959 * 108.63702 * 70.31513 * 4 2 1 6 6 C 1.34771 * 120.59969 * 235.20275 * 5 4 2 7 7 O 1.21288 * 119.99700 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00590 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47245 * 180.02562 * 8 6 5 10 10 N 1.31066 * 125.96207 * 269.69392 * 9 8 6 11 11 N 1.40298 * 108.27072 * 179.85976 * 10 9 8 12 12 H 0.96996 * 126.09318 * 180.11571 * 11 10 9 13 13 C 1.34326 * 107.81575 * 0.34900 * 11 10 9 14 14 C 1.35751 * 107.84421 * 359.85521 * 13 11 10 15 15 C 1.50840 * 124.10990 * 179.83902 * 14 13 11 16 16 C 1.53360 * 108.38343 * 343.51678 * 15 14 13 17 17 C 1.53106 * 109.51109 * 49.92021 * 16 15 14 18 18 C 1.50825 * 128.03213 * 179.97438 * 13 11 10 19 19 C 1.46967 * 118.80975 * 55.47864 * 5 4 2 20 20 C 1.53807 * 108.39868 * 304.48206 * 19 5 4 21 21 H 1.08995 * 109.88282 * 289.76206 * 20 19 5 22 22 C 1.53001 * 109.53297 * 169.30265 * 20 19 5 23 23 N 1.46966 * 109.60938 * 239.56826 * 2 1 3 24 24 C 1.36936 * 120.59314 * 115.46296 * 23 2 1 25 25 H 1.07997 * 119.99849 * 150.94880 * 24 23 2 26 26 C 1.38814 * 120.00074 * 330.94507 * 24 23 2 27 27 N 1.31613 * 119.99914 * 343.14041 * 26 24 23 28 28 Si 1.86797 * 119.99984 * 163.13573 * 26 24 23 29 29 H 1.48498 * 109.47118 * 0.02562 * 28 26 24 30 30 H 1.48497 * 109.47172 * 120.00002 * 28 26 24 31 31 H 1.48491 * 109.47260 * 240.00299 * 28 26 24 32 32 H 1.09001 * 109.47007 * 299.58069 * 1 2 3 33 33 H 1.09000 * 109.47061 * 59.56845 * 1 2 3 34 34 H 1.08997 * 109.47434 * 179.58014 * 1 2 3 35 35 H 1.09006 * 109.60987 * 310.57281 * 4 2 1 36 36 H 1.08995 * 109.61076 * 190.06153 * 4 2 1 37 37 H 1.08994 * 109.46931 * 60.00141 * 8 6 5 38 38 H 1.09004 * 109.47037 * 300.00409 * 8 6 5 39 39 H 1.08998 * 109.68831 * 103.24378 * 15 14 13 40 40 H 1.09006 * 109.67600 * 223.79817 * 15 14 13 41 41 H 1.09006 * 109.46643 * 289.91249 * 16 15 14 42 42 H 1.08993 * 109.45947 * 169.93182 * 16 15 14 43 43 H 1.08998 * 109.46851 * 169.70144 * 17 16 15 44 44 H 1.08996 * 109.46762 * 49.72129 * 17 16 15 45 45 H 1.09001 * 109.68083 * 283.07329 * 18 13 11 46 46 H 1.08998 * 109.68027 * 43.59102 * 18 13 11 47 47 H 1.08998 * 109.61282 * 64.26905 * 19 5 4 48 48 H 1.09007 * 109.60821 * 184.77808 * 19 5 4 49 49 H 1.09004 * 109.47102 * 302.53934 * 22 20 19 50 50 H 1.09001 * 109.47423 * 62.53523 * 22 20 19 51 51 H 1.09002 * 109.47258 * 182.53735 * 22 20 19 52 52 H 0.97000 * 120.00202 * 175.86221 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 1.7604 -2.1660 1.0990 6 6 1.0605 -2.8267 2.0423 7 8 0.6585 -2.2374 3.0233 8 6 0.7761 -4.2975 1.8779 9 6 -0.0165 -4.7912 3.0607 10 7 0.4807 -5.2798 4.1706 11 7 -0.5848 -5.6197 5.0177 12 1 -0.5091 -6.0017 5.9061 13 6 -1.7286 -5.3267 4.3772 14 6 -1.4056 -4.8136 3.1627 15 6 -2.4172 -4.3628 2.1386 16 6 -3.7819 -4.9528 2.5147 17 6 -4.0737 -4.6666 3.9902 18 6 -3.1425 -5.5101 4.8694 19 6 2.2584 -2.8685 -0.0920 20 6 1.7389 -2.1357 -1.3405 21 1 0.6641 -2.2874 -1.4390 22 6 2.4496 -2.6754 -2.5832 23 7 2.0232 -0.7012 -1.1937 24 6 2.7345 -0.0300 -2.1522 25 1 3.4689 -0.5541 -2.7457 26 6 2.5115 1.3241 -2.3610 27 7 1.4178 1.8902 -1.8965 28 14 3.7636 2.3429 -3.3010 29 1 4.8967 1.4765 -3.7142 30 1 3.1222 2.9266 -4.5064 31 1 4.2671 3.4352 -2.4302 32 1 -0.3633 0.5073 0.8937 33 1 -0.3633 0.5205 -0.8861 34 1 -0.3634 -1.0276 -0.0075 35 1 1.5383 -0.3472 2.1312 36 1 3.1198 -0.5797 1.3413 37 1 1.7167 -4.8447 1.8165 38 1 0.2028 -4.4569 0.9647 39 1 -2.4762 -3.2744 2.1350 40 1 -2.1231 -4.7183 1.1510 41 1 -3.7700 -6.0302 2.3492 42 1 -4.5565 -4.4990 1.8966 43 1 -5.1105 -4.9203 4.2113 44 1 -3.9071 -3.6091 4.1949 45 1 -3.4226 -6.5611 4.7981 46 1 -3.2162 -5.1801 5.9056 47 1 3.3484 -2.8652 -0.0896 48 1 1.8932 -3.8956 -0.0903 49 1 3.5266 -2.5533 -2.4676 50 1 2.2149 -3.7328 -2.7056 51 1 2.1138 -2.1246 -3.4619 52 1 1.2899 2.8472 -1.9897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880457626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:13 Heat of formation + Delta-G solvation = 52.825495 kcal Electronic energy + Delta-G solvation = -32158.499380 eV Core-core repulsion = 28159.661947 eV Total energy + Delta-G solvation = -3998.837433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.59192 -39.57486 -37.26759 -36.58573 -33.97158 -33.54709 -32.63257 -31.35526 -30.16417 -29.41240 -28.42219 -27.84685 -26.21387 -25.18824 -23.64861 -23.58731 -22.19632 -21.19803 -20.42076 -19.22881 -18.77469 -18.28208 -17.56809 -16.91732 -16.01550 -15.42824 -15.35147 -15.11069 -14.79593 -14.24973 -14.09811 -13.96651 -13.93693 -13.73128 -13.47473 -13.30007 -13.14478 -12.96239 -12.84643 -12.57700 -12.05319 -11.94520 -11.78700 -11.69335 -11.50312 -11.14156 -11.08523 -11.00490 -10.98259 -10.75001 -10.70174 -10.60137 -10.56289 -10.41219 -10.10808 -10.02551 -9.69644 -9.63410 -9.46975 -9.02959 -8.49048 -8.23544 -8.07903 -6.64277 -5.77734 -3.25694 1.86136 2.68943 2.79799 3.10077 3.36456 3.45344 3.46131 3.63842 4.39101 4.47464 4.55418 4.66745 4.68478 4.98765 5.05867 5.08221 5.18965 5.22325 5.31709 5.36442 5.38540 5.48515 5.52656 5.58083 5.67563 5.69398 5.82639 5.89363 5.90478 5.91607 6.08880 6.10132 6.17297 6.21586 6.27564 6.30923 6.31996 6.40752 6.52916 6.65735 6.70223 6.82762 6.93106 6.95079 7.06196 7.12110 7.29367 7.61831 7.68763 7.71960 7.82694 8.01442 8.42225 8.68214 9.18985 9.81078 10.37845 11.26829 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002772 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.840335 B =10096.965653 C =10413.963516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 H 0.104 0.896 4 C 0.094 3.906 5 N -0.595 5.595 6 C 0.516 3.484 7 O -0.544 6.544 8 C -0.062 4.062 9 C 0.112 3.888 10 N -0.288 5.288 11 N -0.472 5.472 12 H 0.435 0.565 13 C 0.080 3.920 14 C -0.217 4.217 15 C -0.044 4.044 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.054 4.054 19 C 0.092 3.908 20 C 0.154 3.846 21 H 0.033 0.967 22 C -0.137 4.137 23 N -0.581 5.581 24 C -0.250 4.250 25 H 0.072 0.928 26 C 0.004 3.996 27 N -0.894 5.894 28 Si 0.897 3.103 29 H -0.279 1.279 30 H -0.292 1.292 31 H -0.290 1.290 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.022 0.978 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.066 0.934 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 -16.411 9.317 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.073 3.927 3 H 0.122 0.878 4 C -0.029 4.029 5 N -0.327 5.327 6 C 0.303 3.697 7 O -0.422 6.422 8 C -0.104 4.104 9 C -0.054 4.054 10 N -0.111 5.111 11 N -0.179 5.179 12 H 0.278 0.722 13 C -0.049 4.049 14 C -0.229 4.229 15 C -0.082 4.082 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.093 4.093 19 C -0.033 4.033 20 C 0.047 3.953 21 H 0.050 0.950 22 C -0.194 4.194 23 N -0.304 5.304 24 C -0.380 4.380 25 H 0.089 0.911 26 C -0.195 4.195 27 N -0.538 5.538 28 Si 0.727 3.273 29 H -0.204 1.204 30 H -0.219 1.219 31 H -0.217 1.217 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.372 -16.218 10.371 20.614 hybrid contribution 0.075 0.624 -0.345 0.717 sum -7.297 -15.594 10.026 19.923 Atomic orbital electron populations 1.21955 0.98086 0.98632 1.00964 1.20725 0.92378 0.96877 0.82749 0.87792 1.22468 0.99875 0.79307 1.01280 1.47967 1.53418 1.10622 1.20672 1.20154 0.78464 0.88283 0.82839 1.90671 1.52213 1.69211 1.30140 1.20027 1.00917 0.94232 0.95204 1.21234 0.92557 0.97588 0.94006 1.77412 1.09476 1.22100 1.02082 1.45839 1.03334 1.52112 1.16569 0.72191 1.20830 0.89590 1.00864 0.93617 1.19683 0.93473 1.12262 0.97435 1.20006 0.91619 1.00518 0.96070 1.21585 0.97128 1.01036 0.95761 1.21547 0.98261 1.00440 0.94999 1.20328 0.87970 1.01254 0.99769 1.22558 0.99199 0.95143 0.86426 1.20854 0.96461 0.86588 0.91420 0.94970 1.21783 1.00725 0.98266 0.98671 1.44162 1.63177 1.02942 1.20101 1.19218 1.13127 0.92244 1.13393 0.91071 1.25036 0.96277 0.98724 0.99457 1.70050 1.23527 1.10259 1.50009 0.86317 0.81184 0.80458 0.79322 1.20366 1.21884 1.21694 0.95387 0.90689 0.95852 0.90247 0.92469 0.87806 0.87213 0.90927 0.91171 0.91877 0.91347 0.91116 0.91150 0.90005 0.90439 0.91537 0.91047 0.92638 0.94063 0.91504 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.96 37.16 0.33 -2.75 16 2 C 0.18 4.09 2.34 -67.48 -0.16 3.93 16 3 H 0.10 2.68 6.04 -51.93 -0.31 2.37 16 4 C 0.09 1.91 5.96 -3.60 -0.02 1.89 16 5 N -0.59 -10.78 2.60 -172.21 -0.45 -11.23 16 6 C 0.52 9.32 7.69 -10.99 -0.08 9.24 16 7 O -0.54 -11.80 15.44 5.55 0.09 -11.72 16 8 C -0.06 -0.88 4.47 -29.03 -0.13 -1.01 16 9 C 0.11 1.72 5.71 -82.52 -0.47 1.25 16 10 N -0.29 -4.50 12.71 33.59 0.43 -4.07 16 11 N -0.47 -5.73 7.34 33.48 0.25 -5.48 16 12 H 0.43 3.71 8.96 -182.45 -1.64 2.07 16 13 C 0.08 0.94 7.08 -82.33 -0.58 0.36 16 14 C -0.22 -2.97 5.91 -105.05 -0.62 -3.60 16 15 C -0.04 -0.52 6.05 -27.63 -0.17 -0.68 16 16 C -0.12 -1.04 5.90 -26.49 -0.16 -1.19 16 17 C -0.11 -0.92 5.90 -26.49 -0.16 -1.07 16 18 C -0.05 -0.43 6.30 -27.64 -0.17 -0.60 16 19 C 0.09 1.47 5.84 -3.37 -0.02 1.45 16 20 C 0.15 2.90 3.24 -67.25 -0.22 2.69 16 21 H 0.03 0.64 7.38 -51.93 -0.38 0.26 16 22 C -0.14 -2.28 7.94 37.16 0.29 -1.99 16 23 N -0.58 -13.31 2.68 -156.77 -0.42 -13.73 16 24 C -0.25 -6.29 8.55 -15.06 -0.13 -6.42 16 25 H 0.07 1.75 6.25 -52.49 -0.33 1.42 16 26 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 27 N -0.89 -24.37 10.13 55.49 0.56 -23.81 16 28 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 31 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 34 H 0.02 0.49 7.00 -51.93 -0.36 0.13 16 35 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.10 1.29 7.90 -51.93 -0.41 0.88 16 38 H 0.11 1.32 7.46 -51.93 -0.39 0.93 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 41 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 48 H 0.07 0.90 5.91 -51.92 -0.31 0.59 16 49 H 0.05 0.94 7.47 -51.93 -0.39 0.55 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 52 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -32.20 396.40 -10.99 -43.19 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -9.84 Total: 3.56 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.55 Total: 1.51 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.37 Total: -58.32 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.20 -10.99 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.011 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds