Wall clock time and date at job start Wed Apr 1 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.75047 * 2 1 4 4 C 1.53374 * 109.60862 * 120.42606 * 2 1 3 5 5 N 1.46959 * 108.63702 * 70.31513 * 4 2 1 6 6 C 1.34771 * 120.59969 * 235.20275 * 5 4 2 7 7 O 1.21288 * 119.99700 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00590 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47245 * 180.02562 * 8 6 5 10 10 N 1.31066 * 125.96207 * 269.69392 * 9 8 6 11 11 N 1.40298 * 108.27072 * 179.85976 * 10 9 8 12 12 H 0.96996 * 126.09318 * 180.11571 * 11 10 9 13 13 C 1.34326 * 107.81575 * 0.34900 * 11 10 9 14 14 C 1.35751 * 107.84421 * 359.85521 * 13 11 10 15 15 C 1.50840 * 124.10990 * 179.83902 * 14 13 11 16 16 C 1.53360 * 108.38343 * 343.51678 * 15 14 13 17 17 C 1.53106 * 109.51109 * 49.92021 * 16 15 14 18 18 C 1.50825 * 128.03213 * 179.97438 * 13 11 10 19 19 C 1.46967 * 118.80975 * 55.47864 * 5 4 2 20 20 C 1.53807 * 108.39868 * 304.48206 * 19 5 4 21 21 H 1.08995 * 109.88282 * 289.76206 * 20 19 5 22 22 C 1.53001 * 109.53297 * 169.30265 * 20 19 5 23 23 N 1.46966 * 109.60938 * 239.56826 * 2 1 3 24 24 C 1.36936 * 120.59314 * 115.46296 * 23 2 1 25 25 H 1.07997 * 119.99849 * 150.94880 * 24 23 2 26 26 C 1.38814 * 120.00074 * 330.94507 * 24 23 2 27 27 N 1.31613 * 119.99914 * 343.14041 * 26 24 23 28 28 Si 1.86797 * 119.99984 * 163.13573 * 26 24 23 29 29 H 1.48498 * 109.47118 * 0.02562 * 28 26 24 30 30 H 1.48497 * 109.47172 * 120.00002 * 28 26 24 31 31 H 1.48491 * 109.47260 * 240.00299 * 28 26 24 32 32 H 1.09001 * 109.47007 * 299.58069 * 1 2 3 33 33 H 1.09000 * 109.47061 * 59.56845 * 1 2 3 34 34 H 1.08997 * 109.47434 * 179.58014 * 1 2 3 35 35 H 1.09006 * 109.60987 * 310.57281 * 4 2 1 36 36 H 1.08995 * 109.61076 * 190.06153 * 4 2 1 37 37 H 1.08994 * 109.46931 * 60.00141 * 8 6 5 38 38 H 1.09004 * 109.47037 * 300.00409 * 8 6 5 39 39 H 1.08998 * 109.68831 * 103.24378 * 15 14 13 40 40 H 1.09006 * 109.67600 * 223.79817 * 15 14 13 41 41 H 1.09006 * 109.46643 * 289.91249 * 16 15 14 42 42 H 1.08993 * 109.45947 * 169.93182 * 16 15 14 43 43 H 1.08998 * 109.46851 * 169.70144 * 17 16 15 44 44 H 1.08996 * 109.46762 * 49.72129 * 17 16 15 45 45 H 1.09001 * 109.68083 * 283.07329 * 18 13 11 46 46 H 1.08998 * 109.68027 * 43.59102 * 18 13 11 47 47 H 1.08998 * 109.61282 * 64.26905 * 19 5 4 48 48 H 1.09007 * 109.60821 * 184.77808 * 19 5 4 49 49 H 1.09004 * 109.47102 * 302.53934 * 22 20 19 50 50 H 1.09001 * 109.47423 * 62.53523 * 22 20 19 51 51 H 1.09002 * 109.47258 * 182.53735 * 22 20 19 52 52 H 0.97000 * 120.00202 * 175.86221 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 1.7604 -2.1660 1.0990 6 6 1.0605 -2.8267 2.0423 7 8 0.6585 -2.2374 3.0233 8 6 0.7761 -4.2975 1.8779 9 6 -0.0165 -4.7912 3.0607 10 7 0.4807 -5.2798 4.1706 11 7 -0.5848 -5.6197 5.0177 12 1 -0.5091 -6.0017 5.9061 13 6 -1.7286 -5.3267 4.3772 14 6 -1.4056 -4.8136 3.1627 15 6 -2.4172 -4.3628 2.1386 16 6 -3.7819 -4.9528 2.5147 17 6 -4.0737 -4.6666 3.9902 18 6 -3.1425 -5.5101 4.8694 19 6 2.2584 -2.8685 -0.0920 20 6 1.7389 -2.1357 -1.3405 21 1 0.6641 -2.2874 -1.4390 22 6 2.4496 -2.6754 -2.5832 23 7 2.0232 -0.7012 -1.1937 24 6 2.7345 -0.0300 -2.1522 25 1 3.4689 -0.5541 -2.7457 26 6 2.5115 1.3241 -2.3610 27 7 1.4178 1.8902 -1.8965 28 14 3.7636 2.3429 -3.3010 29 1 4.8967 1.4765 -3.7142 30 1 3.1222 2.9266 -4.5064 31 1 4.2671 3.4352 -2.4302 32 1 -0.3633 0.5073 0.8937 33 1 -0.3633 0.5205 -0.8861 34 1 -0.3634 -1.0276 -0.0075 35 1 1.5383 -0.3472 2.1312 36 1 3.1198 -0.5797 1.3413 37 1 1.7167 -4.8447 1.8165 38 1 0.2028 -4.4569 0.9647 39 1 -2.4762 -3.2744 2.1350 40 1 -2.1231 -4.7183 1.1510 41 1 -3.7700 -6.0302 2.3492 42 1 -4.5565 -4.4990 1.8966 43 1 -5.1105 -4.9203 4.2113 44 1 -3.9071 -3.6091 4.1949 45 1 -3.4226 -6.5611 4.7981 46 1 -3.2162 -5.1801 5.9056 47 1 3.3484 -2.8652 -0.0896 48 1 1.8932 -3.8956 -0.0903 49 1 3.5266 -2.5533 -2.4676 50 1 2.2149 -3.7328 -2.7056 51 1 2.1138 -2.1246 -3.4619 52 1 1.2899 2.8472 -1.9897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880457626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:11 Heat of formation + Delta-G solvation = 33.797963 kcal Electronic energy + Delta-G solvation = -32159.324476 eV Core-core repulsion = 28159.661947 eV Total energy + Delta-G solvation = -3999.662528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.55408 -41.05816 -38.87167 -37.34800 -35.64060 -34.68478 -34.14280 -33.14532 -31.10058 -30.31196 -29.74335 -29.40365 -27.65307 -26.82751 -25.36813 -24.42356 -23.02265 -22.67619 -21.79686 -20.71913 -19.77450 -19.62928 -18.48593 -18.36278 -17.68683 -16.87595 -16.82442 -16.40436 -16.10427 -15.75343 -15.44048 -15.18447 -14.94085 -14.80486 -14.73599 -14.56386 -14.32657 -14.24870 -13.93778 -13.75183 -13.56703 -13.46929 -12.99217 -12.92424 -12.85261 -12.80852 -12.76504 -12.40192 -12.26294 -12.23244 -11.94367 -11.76027 -11.73191 -11.68845 -11.48546 -11.43571 -11.35786 -11.34222 -10.84600 -10.45165 -10.20093 -9.66992 -9.19042 -8.50906 -7.73905 -5.23268 0.89795 1.49069 1.53614 1.60564 1.61579 1.70246 1.92497 2.26912 2.58365 3.37847 3.52821 3.57872 3.68504 3.73701 3.93725 4.04707 4.16476 4.20032 4.27854 4.33116 4.35711 4.41830 4.49853 4.55282 4.62221 4.67037 4.68484 4.73135 4.75865 4.81362 4.82299 4.84239 4.96756 5.00139 5.04916 5.09332 5.13103 5.21399 5.23167 5.32519 5.38283 5.43943 5.48627 5.50812 5.62481 5.71136 5.76392 5.78189 5.87891 6.47593 6.48797 6.58097 6.73147 7.23385 7.25757 7.94175 8.46738 9.27907 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002772 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.840335 B =10096.965653 C =10413.963516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.183 3.817 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.596 5.596 6 C 0.516 3.484 7 O -0.586 6.586 8 C -0.055 4.055 9 C 0.092 3.908 10 N -0.325 5.325 11 N -0.465 5.465 12 H 0.448 0.552 13 C 0.089 3.911 14 C -0.247 4.247 15 C -0.044 4.044 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.052 4.052 19 C 0.098 3.902 20 C 0.146 3.854 21 H 0.024 0.976 22 C -0.128 4.128 23 N -0.595 5.595 24 C -0.244 4.244 25 H 0.079 0.921 26 C -0.049 4.049 27 N -0.923 5.923 28 Si 0.953 3.047 29 H -0.266 1.266 30 H -0.300 1.300 31 H -0.299 1.299 32 H 0.027 0.973 33 H 0.045 0.955 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.049 0.951 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.116 0.884 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.042 0.958 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -19.798 9.597 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.087 0.913 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.304 3.696 7 O -0.467 6.467 8 C -0.096 4.096 9 C -0.073 4.073 10 N -0.149 5.149 11 N -0.173 5.173 12 H 0.294 0.706 13 C -0.041 4.041 14 C -0.258 4.258 15 C -0.082 4.082 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.090 4.090 19 C -0.026 4.026 20 C 0.040 3.960 21 H 0.042 0.958 22 C -0.186 4.186 23 N -0.319 5.319 24 C -0.374 4.374 25 H 0.096 0.904 26 C -0.244 4.244 27 N -0.570 5.570 28 Si 0.783 3.217 29 H -0.191 1.191 30 H -0.227 1.227 31 H -0.226 1.226 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.134 0.866 49 H 0.073 0.927 50 H 0.102 0.898 51 H 0.061 0.939 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.795 -19.659 10.642 23.675 hybrid contribution 0.168 1.620 -0.370 1.670 sum -7.627 -18.039 10.272 22.115 Atomic orbital electron populations 1.21732 0.98172 0.98416 0.99439 1.20502 0.92137 0.95649 0.84134 0.91332 1.22080 0.99440 0.80992 0.99299 1.48016 1.53534 1.09610 1.21607 1.20840 0.77140 0.89780 0.81832 1.90651 1.53653 1.70483 1.31864 1.20056 1.02403 0.90965 0.96143 1.21476 0.93525 0.98058 0.94280 1.77306 1.11209 1.23516 1.02844 1.45884 1.02965 1.51555 1.16927 0.70557 1.21455 0.90982 0.98803 0.92874 1.20023 0.93346 1.13521 0.98897 1.20014 0.93177 0.98862 0.96180 1.21584 0.95438 1.01608 0.96518 1.21576 0.99882 0.99321 0.94483 1.20521 0.85206 1.02870 1.00433 1.22628 0.99616 0.96565 0.83778 1.21113 0.96464 0.84389 0.94023 0.95831 1.21705 1.00166 1.00422 0.96301 1.44371 1.63137 1.04722 1.19623 1.19515 1.12778 0.92386 1.12763 0.90384 1.25667 0.97729 0.99977 1.01065 1.70196 1.25043 1.09711 1.52012 0.85429 0.79657 0.78974 0.77659 1.19084 1.22737 1.22626 0.95381 0.93607 0.95165 0.91471 0.92489 0.85584 0.84766 0.93745 0.90658 0.90576 0.90521 0.88362 0.93177 0.87343 0.88732 0.90864 0.86584 0.92746 0.89803 0.93912 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.96 71.98 0.64 -4.86 16 2 C 0.18 8.57 2.34 45.03 0.11 8.67 16 3 H 0.07 3.72 6.04 -2.39 -0.01 3.70 16 4 C 0.11 4.39 5.96 86.42 0.52 4.91 16 5 N -0.60 -20.97 2.60 -817.15 -2.12 -23.09 16 6 C 0.52 18.15 7.69 87.66 0.67 18.82 16 7 O -0.59 -25.68 15.44 -3.06 -0.05 -25.72 16 8 C -0.05 -1.43 4.47 29.10 0.13 -1.30 16 9 C 0.09 2.70 5.71 42.93 0.24 2.95 16 10 N -0.32 -9.80 12.71 -47.63 -0.61 -10.41 16 11 N -0.46 -10.54 7.34 -47.99 -0.35 -10.90 16 12 H 0.45 6.86 8.96 -213.20 -1.91 4.95 16 13 C 0.09 1.92 7.08 41.64 0.29 2.21 16 14 C -0.25 -6.45 5.91 -20.14 -0.12 -6.57 16 15 C -0.04 -0.99 6.05 30.01 0.18 -0.81 16 16 C -0.11 -1.75 5.90 30.75 0.18 -1.57 16 17 C -0.11 -1.54 5.90 30.75 0.18 -1.36 16 18 C -0.05 -0.65 6.30 30.01 0.19 -0.46 16 19 C 0.10 2.85 5.84 86.56 0.51 3.36 16 20 C 0.15 5.26 3.24 45.17 0.15 5.41 16 21 H 0.02 0.91 7.38 -2.39 -0.02 0.89 16 22 C -0.13 -3.95 7.94 71.98 0.57 -3.38 16 23 N -0.60 -27.32 2.68 -649.89 -1.74 -29.07 16 24 C -0.24 -12.31 8.55 84.03 0.72 -11.59 16 25 H 0.08 3.78 6.25 -2.91 -0.02 3.76 16 26 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 27 N -0.92 -52.29 10.13 21.65 0.22 -52.07 16 28 Si 0.95 43.71 29.59 68.60 2.03 45.74 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 31 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.04 2.38 7.16 -2.39 -0.02 2.36 16 34 H 0.03 1.31 7.00 -2.39 -0.02 1.29 16 35 H 0.07 2.92 6.97 -2.38 -0.02 2.91 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.13 2.72 7.90 -2.39 -0.02 2.70 16 38 H 0.13 2.80 7.46 -2.38 -0.02 2.79 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.54 7.95 -2.38 -0.02 1.52 16 41 H 0.08 0.99 8.11 -2.38 -0.02 0.97 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 48 H 0.12 2.39 5.91 -2.38 -0.01 2.37 16 49 H 0.05 1.69 7.47 -2.38 -0.02 1.67 16 50 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 52 H 0.24 13.66 8.32 -92.71 -0.77 12.89 16 Total: -1.00 -73.32 396.40 1.98 -71.34 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.98 Total: 21.92 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.58 Total: 12.25 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -4.61 Total: -125.53 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.32 1.98 -71.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.139 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds