Wall clock time and date at job start Wed Apr 1 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.51647 * 2 1 4 4 C 1.53231 * 109.49162 * 120.06846 * 2 1 3 5 5 N 1.47083 * 108.51903 * 173.78770 * 4 2 1 6 6 C 1.34777 * 120.88237 * 128.81842 * 5 4 2 7 7 O 1.21591 * 120.00153 * 175.02352 * 6 5 4 8 8 N 1.34778 * 119.99778 * 355.29693 * 6 5 4 9 9 C 1.46502 * 119.99806 * 185.04045 * 8 6 5 10 10 C 1.53004 * 109.46730 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47463 * 300.00021 * 10 9 8 12 12 C 1.52997 * 109.47322 * 60.00489 * 10 9 8 13 13 C 1.50702 * 109.46780 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00232 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00148 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99710 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47260 * 89.99604 * 17 15 13 19 19 H 1.48501 * 109.46841 * 209.99632 * 17 15 13 20 20 H 1.48498 * 109.47069 * 329.99797 * 17 15 13 21 21 C 1.47081 * 118.23635 * 309.08515 * 5 4 2 22 22 C 1.52781 * 108.76337 * 50.85287 * 21 5 4 23 23 N 1.46893 * 109.42381 * 306.42261 * 22 21 5 24 24 C 1.39177 * 110.99896 * 187.11412 * 23 22 21 25 25 C 1.39472 * 120.86209 * 110.95907 * 24 23 22 26 26 C 1.37901 * 119.06502 * 179.72497 * 25 24 23 27 27 N 1.31994 * 120.84070 * 0.56486 * 26 25 24 28 28 C 1.32001 * 121.91175 * 359.71236 * 27 26 25 29 29 C 1.37894 * 120.84162 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47065 * 304.60520 * 1 2 3 31 31 H 1.09006 * 109.47034 * 64.60113 * 1 2 3 32 32 H 1.08996 * 109.47444 * 184.60278 * 1 2 3 33 33 H 1.09001 * 109.63238 * 54.07795 * 4 2 1 34 34 H 1.08995 * 109.78920 * 293.58672 * 4 2 1 35 35 H 0.96998 * 120.00482 * 5.04874 * 8 6 5 36 36 H 1.08989 * 109.47406 * 300.00200 * 9 8 6 37 37 H 1.09002 * 109.47083 * 60.00844 * 9 8 6 38 38 H 1.09000 * 109.46808 * 60.00166 * 11 10 9 39 39 H 1.09002 * 109.47165 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.47170 * 300.00536 * 11 10 9 41 41 H 1.09005 * 109.46972 * 59.99327 * 12 10 9 42 42 H 1.08992 * 109.47479 * 179.97438 * 12 10 9 43 43 H 1.09000 * 109.46932 * 299.99823 * 12 10 9 44 44 H 0.96995 * 120.00080 * 180.02562 * 16 15 13 45 45 H 1.09005 * 109.62673 * 170.62120 * 21 5 4 46 46 H 1.09000 * 109.62939 * 291.20251 * 21 5 4 47 47 H 1.09000 * 109.56369 * 186.36411 * 22 21 5 48 48 H 1.09003 * 109.35724 * 66.35528 * 22 21 5 49 49 H 1.07999 * 120.46765 * 359.97438 * 25 24 23 50 50 H 1.08001 * 119.58049 * 180.24919 * 26 25 24 51 51 H 1.07997 * 119.58063 * 179.97438 * 28 27 26 52 52 H 1.08001 * 120.47087 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 1.2501 5 7 3.5042 -0.8432 1.1552 6 6 4.2978 -0.4492 2.1709 7 8 5.4976 -0.6380 2.1134 8 7 3.7607 0.1491 3.2526 9 6 4.6317 0.6765 4.3059 10 6 3.7760 1.2992 5.4109 11 6 2.9366 2.4368 4.8261 12 6 2.8503 0.2334 6.0008 13 6 4.6720 1.8422 6.4942 14 1 5.7444 1.7519 6.4038 15 6 4.1225 2.4535 7.6013 16 7 2.8166 2.5631 7.7116 17 14 5.2332 3.1273 8.9437 18 1 5.5744 4.5405 8.6409 19 1 4.5299 3.0568 10.2497 20 1 6.4781 2.3203 9.0075 21 6 4.0784 -1.3986 -0.0797 22 6 3.4865 -0.6537 -1.2752 23 7 2.0202 -0.6939 -1.1985 24 6 1.4458 -0.1652 -2.3508 25 6 0.7639 -0.9840 -3.2506 26 6 0.2041 -0.4202 -4.3778 27 7 0.3172 0.8734 -4.6147 28 6 0.9593 1.6802 -3.7906 29 6 1.5418 1.1962 -2.6383 30 1 -0.3633 0.5836 0.8458 31 1 -0.3633 0.4408 -0.9284 32 1 -0.3634 -1.0243 0.0825 33 1 1.5957 -1.7169 1.3063 34 1 1.7776 -0.1532 2.1406 35 1 2.7976 0.2305 3.3338 36 1 5.2294 -0.1339 4.7228 37 1 5.2915 1.4356 3.8856 38 1 2.2886 2.0444 4.0424 39 1 2.3273 2.8806 5.6135 40 1 3.5961 3.1961 4.4059 41 1 3.4484 -0.5771 6.4174 42 1 2.2410 0.6768 6.7883 43 1 2.2023 -0.1590 5.2171 44 1 2.4301 2.9934 8.4903 45 1 5.1609 -1.2710 -0.0699 46 1 3.8324 -2.4578 -0.1539 47 1 3.8156 -1.1277 -2.1999 48 1 3.8235 0.3828 -1.2579 49 1 0.6720 -2.0440 -3.0653 50 1 -0.3293 -1.0458 -5.0781 51 1 1.0293 2.7328 -4.0218 52 1 2.0654 1.8618 -1.9680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883687180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:53 Heat of formation + Delta-G solvation = 29.095213 kcal Electronic energy + Delta-G solvation = -31398.754601 eV Core-core repulsion = 27398.888146 eV Total energy + Delta-G solvation = -3999.866455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22128 -39.98984 -38.41977 -36.47963 -34.97185 -33.55656 -32.80596 -31.63606 -31.39743 -30.59771 -28.06826 -26.56319 -25.75725 -25.59068 -24.81714 -23.91447 -23.00078 -22.74619 -20.82396 -19.47409 -18.94080 -18.23144 -17.43552 -16.61290 -16.24204 -15.98702 -15.90010 -15.75355 -15.37300 -14.85275 -14.68974 -14.48974 -14.35037 -14.00203 -13.86403 -13.60529 -13.52550 -12.97729 -12.83151 -12.63379 -12.42262 -12.29844 -12.14175 -12.00768 -11.68759 -11.54652 -11.41006 -11.36726 -11.21407 -10.88607 -10.70628 -10.41277 -10.22082 -9.88530 -9.81181 -9.77052 -9.65978 -9.52226 -9.33028 -9.09325 -8.81680 -8.69112 -8.42202 -8.17710 -6.04084 -4.13868 0.77765 0.84115 2.77545 3.24845 3.27095 3.34218 3.38568 3.44650 3.54065 4.12528 4.17819 4.37362 4.40371 4.53799 4.62461 4.66374 4.78713 4.81045 4.89931 4.98469 5.07995 5.19742 5.22879 5.24406 5.36813 5.39433 5.44716 5.48530 5.59915 5.67166 5.76457 5.84734 5.95888 6.14552 6.23908 6.33792 6.40794 6.47529 6.52561 6.75962 6.78490 6.83455 6.89639 7.00175 7.05429 7.20933 7.35605 7.53089 7.63872 7.67881 7.98497 8.09720 8.32846 8.38654 8.85630 8.96288 9.51960 10.97434 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.002312 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.517465 B =12110.416127 C =12674.924710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.055 0.945 4 C 0.123 3.877 5 N -0.638 5.638 6 C 0.702 3.298 7 O -0.596 6.596 8 N -0.733 5.733 9 C 0.149 3.851 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.130 4.130 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.138 3.862 22 C 0.047 3.953 23 N -0.500 5.500 24 C 0.147 3.853 25 C -0.152 4.152 26 C 0.103 3.897 27 N -0.492 5.492 28 C 0.109 3.891 29 C -0.204 4.204 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.003 0.997 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.260 0.740 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.141 0.859 50 H 0.157 0.843 51 H 0.154 0.846 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 -6.395 -20.952 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 H 0.073 0.927 4 C -0.001 4.001 5 N -0.377 5.377 6 C 0.404 3.596 7 O -0.474 6.474 8 N -0.389 5.389 9 C 0.026 3.974 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.014 3.986 22 C -0.080 4.080 23 N -0.222 5.222 24 C 0.044 3.956 25 C -0.173 4.173 26 C -0.054 4.054 27 N -0.201 5.201 28 C -0.048 4.048 29 C -0.227 4.227 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.159 0.841 50 H 0.175 0.825 51 H 0.171 0.829 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.476 -6.580 -21.492 23.687 hybrid contribution 0.662 0.960 1.511 1.909 sum -6.814 -5.619 -19.981 21.846 Atomic orbital electron populations 1.21877 0.92985 1.03200 1.02561 1.22108 0.96113 0.96140 0.89240 0.92722 1.21720 0.80510 1.01170 0.96677 1.47312 1.05629 1.68094 1.16709 1.15967 0.84952 0.78486 0.80202 1.90877 1.13263 1.62391 1.80912 1.45679 1.10708 1.61610 1.20900 1.21608 0.92492 0.96788 0.86505 1.18361 0.92941 0.92105 0.91040 1.21818 0.99120 0.98959 0.98762 1.21818 0.99087 0.97720 1.00105 1.20979 0.92776 1.37257 1.03313 0.92396 1.24879 0.95029 0.95672 0.97941 1.69796 1.09648 1.43812 1.29256 0.86569 0.80769 0.79346 0.81181 1.20731 1.21268 1.19883 1.21364 0.99371 0.96956 0.80937 1.22538 0.85058 1.00518 0.99842 1.59536 1.07227 1.55310 1.00148 1.19071 0.94178 0.91113 0.91228 1.22101 0.98664 1.01618 0.94889 1.22740 0.96103 0.91257 0.95293 1.67728 1.15900 1.05171 1.31326 1.22620 0.92557 0.99779 0.89885 1.22741 1.03028 0.96951 0.99933 0.91094 0.92304 0.91271 0.90451 0.89524 0.77028 0.92801 0.93055 0.97805 0.89579 0.95477 0.95369 0.89592 0.97711 0.93008 0.88203 0.91072 0.89243 0.93598 0.84149 0.82544 0.82872 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.02 37.16 0.34 -0.87 16 2 C 0.07 0.68 2.21 -67.59 -0.15 0.53 16 3 H 0.05 0.58 7.27 -51.93 -0.38 0.20 16 4 C 0.12 1.32 5.88 -3.60 -0.02 1.30 16 5 N -0.64 -8.58 3.02 -178.47 -0.54 -9.12 16 6 C 0.70 12.51 8.31 -86.92 -0.72 11.79 16 7 O -0.60 -12.79 15.83 5.29 0.08 -12.70 16 8 N -0.73 -13.16 4.87 -65.22 -0.32 -13.47 16 9 C 0.15 3.17 4.51 -4.04 -0.02 3.16 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 11 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 12 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 13 C -0.50 -13.09 8.01 -34.44 -0.28 -13.37 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -23.34 9.35 55.43 0.52 -22.82 16 17 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.14 1.55 6.55 -3.84 -0.03 1.53 16 22 C 0.05 0.44 5.35 -3.94 -0.02 0.42 16 23 N -0.50 -4.51 4.47 -163.37 -0.73 -5.24 16 24 C 0.15 1.27 3.08 -83.60 -0.26 1.01 16 25 C -0.15 -1.17 10.06 -39.25 -0.39 -1.56 16 26 C 0.10 0.80 11.17 -17.61 -0.20 0.61 16 27 N -0.49 -4.73 10.36 -13.35 -0.14 -4.87 16 28 C 0.11 0.94 11.17 -17.61 -0.20 0.74 16 29 C -0.20 -1.76 8.49 -39.25 -0.33 -2.10 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.95 5.63 -51.93 -0.29 0.65 16 35 H 0.39 6.36 3.66 -40.82 -0.15 6.21 16 36 H 0.05 1.22 8.14 -51.94 -0.42 0.80 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 39 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 43 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 44 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 45 H 0.10 1.27 7.10 -51.93 -0.37 0.90 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 48 H 0.05 0.48 7.97 -51.93 -0.41 0.06 16 49 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 51 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 52 H 0.13 1.10 7.35 -52.49 -0.39 0.71 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -29.87 399.24 -10.26 -40.13 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.28 Total: 5.62 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.85 Total: 0.89 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.21 Total: -55.52 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.87 -10.26 -40.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.224 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds