Wall clock time and date at job start Wed Apr 1 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.51647 * 2 1 4 4 C 1.53231 * 109.49162 * 120.06846 * 2 1 3 5 5 N 1.47083 * 108.51903 * 173.78770 * 4 2 1 6 6 C 1.34777 * 120.88237 * 128.81842 * 5 4 2 7 7 O 1.21591 * 120.00153 * 175.02352 * 6 5 4 8 8 N 1.34778 * 119.99778 * 355.29693 * 6 5 4 9 9 C 1.46502 * 119.99806 * 185.04045 * 8 6 5 10 10 C 1.53004 * 109.46730 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47463 * 300.00021 * 10 9 8 12 12 C 1.52997 * 109.47322 * 60.00489 * 10 9 8 13 13 C 1.50702 * 109.46780 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00232 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00148 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99710 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47260 * 89.99604 * 17 15 13 19 19 H 1.48501 * 109.46841 * 209.99632 * 17 15 13 20 20 H 1.48498 * 109.47069 * 329.99797 * 17 15 13 21 21 C 1.47081 * 118.23635 * 309.08515 * 5 4 2 22 22 C 1.52781 * 108.76337 * 50.85287 * 21 5 4 23 23 N 1.46893 * 109.42381 * 306.42261 * 22 21 5 24 24 C 1.39177 * 110.99896 * 187.11412 * 23 22 21 25 25 C 1.39472 * 120.86209 * 110.95907 * 24 23 22 26 26 C 1.37901 * 119.06502 * 179.72497 * 25 24 23 27 27 N 1.31994 * 120.84070 * 0.56486 * 26 25 24 28 28 C 1.32001 * 121.91175 * 359.71236 * 27 26 25 29 29 C 1.37894 * 120.84162 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47065 * 304.60520 * 1 2 3 31 31 H 1.09006 * 109.47034 * 64.60113 * 1 2 3 32 32 H 1.08996 * 109.47444 * 184.60278 * 1 2 3 33 33 H 1.09001 * 109.63238 * 54.07795 * 4 2 1 34 34 H 1.08995 * 109.78920 * 293.58672 * 4 2 1 35 35 H 0.96998 * 120.00482 * 5.04874 * 8 6 5 36 36 H 1.08989 * 109.47406 * 300.00200 * 9 8 6 37 37 H 1.09002 * 109.47083 * 60.00844 * 9 8 6 38 38 H 1.09000 * 109.46808 * 60.00166 * 11 10 9 39 39 H 1.09002 * 109.47165 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.47170 * 300.00536 * 11 10 9 41 41 H 1.09005 * 109.46972 * 59.99327 * 12 10 9 42 42 H 1.08992 * 109.47479 * 179.97438 * 12 10 9 43 43 H 1.09000 * 109.46932 * 299.99823 * 12 10 9 44 44 H 0.96995 * 120.00080 * 180.02562 * 16 15 13 45 45 H 1.09005 * 109.62673 * 170.62120 * 21 5 4 46 46 H 1.09000 * 109.62939 * 291.20251 * 21 5 4 47 47 H 1.09000 * 109.56369 * 186.36411 * 22 21 5 48 48 H 1.09003 * 109.35724 * 66.35528 * 22 21 5 49 49 H 1.07999 * 120.46765 * 359.97438 * 25 24 23 50 50 H 1.08001 * 119.58049 * 180.24919 * 26 25 24 51 51 H 1.07997 * 119.58063 * 179.97438 * 28 27 26 52 52 H 1.08001 * 120.47087 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 1.2501 5 7 3.5042 -0.8432 1.1552 6 6 4.2978 -0.4492 2.1709 7 8 5.4976 -0.6380 2.1134 8 7 3.7607 0.1491 3.2526 9 6 4.6317 0.6765 4.3059 10 6 3.7760 1.2992 5.4109 11 6 2.9366 2.4368 4.8261 12 6 2.8503 0.2334 6.0008 13 6 4.6720 1.8422 6.4942 14 1 5.7444 1.7519 6.4038 15 6 4.1225 2.4535 7.6013 16 7 2.8166 2.5631 7.7116 17 14 5.2332 3.1273 8.9437 18 1 5.5744 4.5405 8.6409 19 1 4.5299 3.0568 10.2497 20 1 6.4781 2.3203 9.0075 21 6 4.0784 -1.3986 -0.0797 22 6 3.4865 -0.6537 -1.2752 23 7 2.0202 -0.6939 -1.1985 24 6 1.4458 -0.1652 -2.3508 25 6 0.7639 -0.9840 -3.2506 26 6 0.2041 -0.4202 -4.3778 27 7 0.3172 0.8734 -4.6147 28 6 0.9593 1.6802 -3.7906 29 6 1.5418 1.1962 -2.6383 30 1 -0.3633 0.5836 0.8458 31 1 -0.3633 0.4408 -0.9284 32 1 -0.3634 -1.0243 0.0825 33 1 1.5957 -1.7169 1.3063 34 1 1.7776 -0.1532 2.1406 35 1 2.7976 0.2305 3.3338 36 1 5.2294 -0.1339 4.7228 37 1 5.2915 1.4356 3.8856 38 1 2.2886 2.0444 4.0424 39 1 2.3273 2.8806 5.6135 40 1 3.5961 3.1961 4.4059 41 1 3.4484 -0.5771 6.4174 42 1 2.2410 0.6768 6.7883 43 1 2.2023 -0.1590 5.2171 44 1 2.4301 2.9934 8.4903 45 1 5.1609 -1.2710 -0.0699 46 1 3.8324 -2.4578 -0.1539 47 1 3.8156 -1.1277 -2.1999 48 1 3.8235 0.3828 -1.2579 49 1 0.6720 -2.0440 -3.0653 50 1 -0.3293 -1.0458 -5.0781 51 1 1.0293 2.7328 -4.0218 52 1 2.0654 1.8618 -1.9680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883687180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:52 Heat of formation + Delta-G solvation = 11.593944 kcal Electronic energy + Delta-G solvation = -31399.513513 eV Core-core repulsion = 27398.888146 eV Total energy + Delta-G solvation = -4000.625367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02781 -41.09760 -39.40044 -38.16247 -36.05703 -35.09261 -33.76672 -32.82161 -32.19114 -31.81248 -28.93359 -27.57184 -27.55893 -27.37388 -26.45805 -24.54900 -23.74356 -23.69304 -21.79707 -20.67571 -20.61206 -19.42744 -18.27747 -17.77859 -17.34597 -17.27753 -16.72781 -16.68129 -16.62701 -16.50295 -15.60762 -15.52929 -15.43265 -15.05616 -14.87471 -14.75180 -14.56304 -14.46729 -14.05289 -14.04821 -13.58629 -13.20907 -13.14886 -13.06707 -12.98012 -12.73290 -12.67123 -12.58829 -12.53674 -12.38175 -12.25560 -12.15719 -12.12607 -11.49264 -11.34431 -11.10607 -10.71187 -10.51757 -10.47403 -10.40101 -10.17925 -10.11420 -9.79715 -9.41655 -8.02368 -6.17586 0.15434 0.22638 1.42572 1.45542 1.53119 1.61041 2.11168 2.45363 2.52293 2.83001 2.95982 3.21451 3.57873 3.60308 3.77402 3.94876 3.98761 4.03114 4.08832 4.13822 4.28418 4.30589 4.41561 4.43409 4.52399 4.53344 4.63859 4.69477 4.71836 4.78592 4.84805 4.87325 4.90952 4.96291 4.98928 5.04248 5.09091 5.19151 5.22207 5.30201 5.37201 5.42596 5.60312 5.63224 5.66850 5.67695 5.72335 5.89830 6.14876 6.18468 6.21469 6.43764 6.86282 6.97443 7.03434 7.49968 7.55270 8.96689 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.002312 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.517465 B =12110.416127 C =12674.924710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.076 3.924 3 H 0.042 0.958 4 C 0.121 3.879 5 N -0.630 5.630 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.727 5.727 9 C 0.167 3.833 10 C 0.053 3.947 11 C -0.118 4.118 12 C -0.119 4.119 13 C -0.527 4.527 14 H 0.044 0.956 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.944 3.056 18 H -0.279 1.279 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.136 3.864 22 C 0.056 3.944 23 N -0.494 5.494 24 C 0.137 3.863 25 C -0.147 4.147 26 C 0.101 3.899 27 N -0.515 5.515 28 C 0.100 3.900 29 C -0.209 4.209 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.403 0.597 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.260 0.740 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.034 0.966 49 H 0.157 0.843 50 H 0.182 0.818 51 H 0.167 0.833 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -7.283 -22.317 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.060 0.940 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.401 3.599 7 O -0.519 6.519 8 N -0.384 5.384 9 C 0.042 3.958 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.177 4.177 13 C -0.566 4.566 14 H 0.062 0.938 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.208 1.208 20 H -0.202 1.202 21 C 0.013 3.987 22 C -0.071 4.071 23 N -0.216 5.216 24 C 0.034 3.966 25 C -0.168 4.168 26 C -0.056 4.056 27 N -0.225 5.225 28 C -0.056 4.056 29 C -0.231 4.231 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.126 0.874 48 H 0.052 0.948 49 H 0.175 0.825 50 H 0.199 0.801 51 H 0.184 0.816 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.062 -7.475 -22.894 25.732 hybrid contribution 1.111 1.201 1.854 2.473 sum -7.951 -6.274 -21.040 23.351 Atomic orbital electron populations 1.21813 0.91634 1.03796 1.02602 1.22039 0.97029 0.95235 0.88870 0.93982 1.21932 0.78551 1.02352 0.97413 1.47347 1.06626 1.66773 1.16035 1.16088 0.84724 0.78329 0.80735 1.90849 1.15292 1.63961 1.81794 1.45381 1.10737 1.61761 1.20501 1.21143 0.92247 0.95589 0.86777 1.18352 0.92946 0.92623 0.90882 1.21648 0.98821 0.98334 0.98764 1.21657 0.98802 0.96976 1.00271 1.21253 0.92684 1.37941 1.04722 0.93767 1.25432 0.96154 0.95991 0.99499 1.69894 1.10357 1.43910 1.29561 0.85774 0.79256 0.78647 0.79217 1.20520 1.20803 1.20159 1.21500 0.98566 0.98053 0.80572 1.22439 0.85437 0.99669 0.99560 1.59548 1.06747 1.55050 1.00221 1.19157 0.94756 0.91320 0.91336 1.22264 0.97853 1.02291 0.94347 1.23182 0.95755 0.90951 0.95720 1.67763 1.16595 1.06166 1.31960 1.22861 0.92415 1.00520 0.89801 1.22744 1.03242 0.97097 1.00033 0.90547 0.92694 0.90433 0.88749 0.89568 0.75816 0.94670 0.94689 0.94729 0.91763 0.96385 0.96344 0.91745 0.94667 0.93004 0.89915 0.89411 0.87444 0.94815 0.82491 0.80093 0.81590 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.02 71.98 0.65 -1.28 16 2 C 0.08 1.28 2.21 44.99 0.10 1.38 16 3 H 0.04 0.83 7.27 -2.39 -0.02 0.81 16 4 C 0.12 2.31 5.88 86.35 0.51 2.81 16 5 N -0.63 -16.11 3.02 -836.82 -2.52 -18.63 16 6 C 0.70 24.64 8.31 179.05 1.49 26.13 16 7 O -0.64 -27.72 15.83 -4.00 -0.06 -27.79 16 8 N -0.73 -25.58 4.87 -478.53 -2.33 -27.91 16 9 C 0.17 7.19 4.51 86.38 0.39 7.58 16 10 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 11 C -0.12 -5.15 8.08 71.98 0.58 -4.56 16 12 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 13 C -0.53 -27.76 8.01 25.60 0.21 -27.55 16 14 H 0.04 2.39 7.74 -2.91 -0.02 2.36 16 15 C 0.03 1.52 5.15 84.66 0.44 1.95 16 16 N -0.90 -47.33 9.35 21.45 0.20 -47.13 16 17 Si 0.94 42.39 29.54 68.60 2.03 44.42 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.14 2.89 6.55 86.20 0.56 3.46 16 22 C 0.06 0.96 5.35 86.23 0.46 1.42 16 23 N -0.49 -7.77 4.47 -670.79 -3.00 -10.77 16 24 C 0.14 2.08 3.08 38.57 0.12 2.20 16 25 C -0.15 -1.86 10.06 22.49 0.23 -1.63 16 26 C 0.10 1.33 11.17 84.59 0.95 2.27 16 27 N -0.52 -9.04 10.36 -196.15 -2.03 -11.08 16 28 C 0.10 1.61 11.17 84.59 0.94 2.55 16 29 C -0.21 -3.33 8.49 22.49 0.19 -3.14 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.82 6.56 -2.38 -0.02 0.81 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.67 5.63 -2.39 -0.01 1.65 16 35 H 0.40 12.32 3.66 -92.71 -0.34 11.98 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 39 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 43 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 44 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 45 H 0.08 2.08 7.10 -2.38 -0.02 2.07 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 48 H 0.03 0.67 7.97 -2.39 -0.02 0.65 16 49 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 50 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 51 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 52 H 0.13 2.06 7.35 -2.91 -0.02 2.04 16 Total: -1.00 -64.46 399.24 1.22 -63.24 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.58 Total: 24.33 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 8.36 Total: 11.31 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -9.69 Total: -115.52 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.06 Total: -27.79 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -64.46 1.22 -63.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds