Wall clock time and date at job start Wed Apr 1 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46945 * 2 1 4 4 C 1.50694 * 109.47017 * 119.99938 * 2 1 3 5 5 O 1.21278 * 120.00291 * 108.05878 * 4 2 1 6 6 N 1.34783 * 119.99975 * 288.06169 * 4 2 1 7 7 C 1.46494 * 120.00076 * 359.97438 * 6 4 2 8 8 C 1.46508 * 119.99777 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.46921 * 89.99921 * 8 6 4 10 10 H 1.08005 * 120.00510 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99762 * 179.97438 * 9 8 6 12 12 N 1.31507 * 119.99874 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99764 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47429 * 60.00040 * 13 11 9 15 15 H 1.48499 * 109.46860 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47094 * 299.99691 * 13 11 9 17 17 N 1.46894 * 109.47137 * 239.99814 * 2 1 3 18 18 C 1.46961 * 111.00247 * 311.02494 * 17 2 1 19 19 C 1.53044 * 109.36355 * 183.19077 * 18 17 2 20 20 N 1.46953 * 109.36346 * 301.59049 * 19 18 17 21 21 C 1.39171 * 111.00200 * 183.19487 * 20 19 18 22 22 C 1.39479 * 120.86234 * 235.92633 * 21 20 19 23 23 C 1.37902 * 119.06570 * 179.72608 * 22 21 20 24 24 N 1.32000 * 120.83949 * 0.55563 * 23 22 21 25 25 C 1.31993 * 121.91055 * 359.71660 * 24 23 22 26 26 C 1.37898 * 120.84272 * 359.97438 * 25 24 23 27 27 C 1.46957 * 110.87993 * 59.32652 * 20 19 18 28 28 C 1.46959 * 110.99785 * 74.82130 * 17 2 1 29 29 H 1.09005 * 109.49059 * 296.77838 * 28 17 2 30 30 C 1.52997 * 109.49111 * 56.84649 * 28 17 2 31 31 H 1.08995 * 109.47305 * 186.02399 * 1 2 3 32 32 H 1.08999 * 109.46783 * 306.02725 * 1 2 3 33 33 H 1.09000 * 109.47301 * 66.02182 * 1 2 3 34 34 H 1.09004 * 109.46989 * 89.99947 * 7 6 4 35 35 H 1.08996 * 109.47441 * 209.99878 * 7 6 4 36 36 H 1.08999 * 109.47242 * 330.00555 * 7 6 4 37 37 H 1.08998 * 109.47129 * 209.99966 * 8 6 4 38 38 H 1.08997 * 109.47148 * 330.00270 * 8 6 4 39 39 H 0.97008 * 119.99969 * 179.97438 * 12 11 9 40 40 H 1.08995 * 109.49127 * 63.21526 * 18 17 2 41 41 H 1.09007 * 109.48349 * 303.15076 * 18 17 2 42 42 H 1.09005 * 109.48534 * 181.63112 * 19 18 17 43 43 H 1.08996 * 109.49351 * 61.56182 * 19 18 17 44 44 H 1.08000 * 120.46755 * 359.96931 * 22 21 20 45 45 H 1.07994 * 119.58123 * 180.29661 * 23 22 21 46 46 H 1.07997 * 119.57599 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.46093 * 179.97438 * 26 25 24 48 48 H 1.09005 * 109.48836 * 60.64571 * 27 20 19 49 49 H 1.09001 * 109.49096 * 180.71040 * 27 20 19 50 50 H 1.08996 * 109.47376 * 173.62082 * 30 28 17 51 51 H 1.09004 * 109.46566 * 293.61849 * 30 28 17 52 52 H 1.08997 * 109.47371 * 53.61257 * 30 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5414 -1.8067 1.1324 6 7 1.9158 -0.1273 2.4400 7 6 1.3013 1.1973 2.5585 8 6 2.4046 -0.8177 3.6362 9 6 3.8455 -0.4473 3.8763 10 1 4.3472 0.2339 3.2049 11 6 4.5234 -0.9781 4.9532 12 7 3.9128 -1.8079 5.7705 13 14 6.3093 -0.5184 5.2513 14 1 6.4164 0.9495 5.4481 15 1 6.8048 -1.2183 6.4636 16 1 7.1266 -0.9217 4.0787 17 7 2.0197 -0.6925 -1.1994 18 6 1.3462 -1.9873 -1.3718 19 6 1.9392 -2.7103 -2.5834 20 7 1.7760 -1.8718 -3.7791 21 6 2.2399 -2.5279 -4.9155 22 6 3.2151 -1.9494 -5.7277 23 6 3.6520 -2.6347 -6.8417 24 7 3.1515 -3.8171 -7.1483 25 6 2.2238 -4.3951 -6.4084 26 6 1.7380 -3.7786 -5.2746 27 6 2.4495 -0.5770 -3.6068 28 6 1.8565 0.1461 -2.3951 29 1 0.7964 0.3332 -2.5662 30 6 2.5834 1.4765 -2.1887 31 1 -0.3633 -1.0219 0.1078 32 1 -0.3633 0.6044 0.8311 33 1 -0.3634 0.4176 -0.9390 34 1 0.2275 1.0873 2.7104 35 1 1.7361 1.7250 3.4073 36 1 1.4828 1.7650 1.6459 37 1 1.8051 -0.5218 4.4970 38 1 2.3257 -1.8952 3.4915 39 1 4.3899 -2.1817 6.5279 40 1 0.2804 -1.8244 -1.5312 41 1 1.4921 -2.5948 -0.4786 42 1 1.4214 -3.6581 -2.7305 43 1 2.9993 -2.8974 -2.4123 44 1 3.6252 -0.9801 -5.4853 45 1 4.4103 -2.1967 -7.4737 46 1 1.8410 -5.3637 -6.6941 47 1 0.9785 -4.2570 -4.6739 48 1 3.5154 -0.7399 -3.4474 49 1 2.3037 0.0305 -4.5000 50 1 2.5590 2.0513 -3.1144 51 1 2.0900 2.0410 -1.3974 52 1 3.6187 1.2850 -1.9070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887131307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:15 Heat of formation + Delta-G solvation = 36.750205 kcal Electronic energy + Delta-G solvation = -31585.015048 eV Core-core repulsion = 27585.480538 eV Total energy + Delta-G solvation = -3999.534509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07967 -39.93625 -38.49895 -36.32815 -34.83076 -33.03736 -32.67381 -31.90227 -31.41871 -29.84905 -27.82598 -27.46150 -26.42651 -25.87939 -24.19928 -23.79290 -22.74445 -22.12343 -21.50458 -19.52944 -18.37639 -17.86240 -16.98013 -16.51503 -16.33519 -16.15860 -15.71216 -15.29226 -15.09117 -14.98192 -14.59603 -14.54997 -14.39071 -13.95685 -13.87629 -13.72279 -13.66382 -13.39455 -12.84107 -12.57317 -12.36791 -12.24580 -12.21485 -12.09200 -11.87639 -11.70968 -11.62209 -11.60652 -11.20718 -11.12050 -10.96882 -10.89743 -10.63034 -10.55605 -10.44821 -10.15620 -9.68973 -9.63684 -9.38665 -8.86948 -8.45170 -8.43845 -8.15017 -7.63607 -6.04855 -4.09399 0.95390 1.07947 3.29269 3.31367 3.35809 3.36100 3.42429 3.59644 3.68631 4.12176 4.28356 4.44285 4.45277 4.52623 4.73887 4.79419 4.88254 4.97169 5.00386 5.06868 5.11124 5.15692 5.18035 5.24617 5.29556 5.29822 5.39011 5.41884 5.49812 5.56611 5.59378 5.64659 5.67135 5.68452 5.74978 5.83515 5.87003 5.91936 5.99504 6.08632 6.15355 6.21544 6.35915 6.61022 6.82149 6.94085 7.08984 7.14122 7.42875 7.53748 7.83393 7.91696 8.22873 8.41554 8.90219 9.11445 9.55740 11.03175 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002577 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.969842 B =10863.375301 C =11557.271033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 H 0.106 0.894 4 C 0.514 3.486 5 O -0.527 6.527 6 N -0.602 5.602 7 C 0.083 3.917 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.510 5.510 18 C 0.050 3.950 19 C 0.064 3.936 20 N -0.490 5.490 21 C 0.162 3.838 22 C -0.227 4.227 23 C 0.122 3.878 24 N -0.511 5.511 25 C 0.119 3.881 26 C -0.198 4.198 27 C 0.059 3.941 28 C 0.081 3.919 29 H 0.052 0.948 30 C -0.150 4.150 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.042 0.958 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.137 0.863 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 4.556 -20.872 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.053 4.053 3 H 0.123 0.877 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.335 5.335 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.235 5.235 18 C -0.078 4.078 19 C -0.061 4.061 20 N -0.204 5.204 21 C 0.055 3.945 22 C -0.251 4.251 23 C -0.035 4.035 24 N -0.222 5.222 25 C -0.037 4.037 26 C -0.220 4.220 27 C -0.067 4.067 28 C -0.028 4.028 29 H 0.070 0.930 30 C -0.208 4.208 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.153 0.847 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.547 3.448 -21.368 22.923 hybrid contribution 0.481 0.924 1.054 1.482 sum -7.066 4.372 -20.314 21.948 Atomic orbital electron populations 1.22389 0.95642 1.03261 1.02667 1.21766 0.93999 0.99219 0.90307 0.87651 1.20014 0.79733 0.86464 0.83834 1.90608 1.43664 1.20707 1.85304 1.48126 1.58918 1.18089 1.08361 1.21692 0.96884 0.85407 1.02165 1.19261 0.94084 0.93688 0.80126 1.21388 0.96653 1.27809 1.10525 0.92554 1.24929 0.98380 0.94915 0.95862 1.69919 1.37057 1.30894 1.15609 0.86569 0.84870 0.78437 0.77606 1.20275 1.21193 1.20164 1.62040 1.57264 1.03216 1.00967 1.22431 0.95548 0.91135 0.98665 1.22363 1.01491 0.95380 0.86817 1.59008 1.53708 1.05043 1.02632 1.19297 0.90496 0.92428 0.92306 1.22282 0.99530 1.03627 0.99618 1.22574 0.96750 0.90279 0.93918 1.67720 1.11615 1.11163 1.31713 1.22590 0.91986 0.98968 0.90205 1.21808 1.03779 0.95909 1.00532 1.22423 0.97414 0.88836 0.98074 1.21687 0.98620 0.93066 0.89447 0.93044 1.21904 1.01857 0.95172 1.01828 0.91711 0.91022 0.92004 0.93734 0.90762 0.92649 0.95100 0.93912 0.92678 0.94016 0.87032 0.89575 0.92254 0.84521 0.82944 0.82775 0.84660 0.92149 0.89653 0.91915 0.91944 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 7.99 37.16 0.30 -1.81 16 2 C 0.06 0.84 1.72 -68.87 -0.12 0.72 16 3 H 0.11 1.37 4.27 -51.93 -0.22 1.15 16 4 C 0.51 10.24 6.84 -10.99 -0.08 10.17 16 5 O -0.53 -12.70 13.85 5.56 0.08 -12.62 16 6 N -0.60 -12.34 2.86 -182.96 -0.52 -12.86 16 7 C 0.08 1.25 9.14 59.84 0.55 1.79 16 8 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 9 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 13 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 N -0.51 -7.08 4.22 -219.94 -0.93 -8.01 16 18 C 0.05 0.68 4.48 -3.77 -0.02 0.66 16 19 C 0.06 0.78 5.38 -3.77 -0.02 0.76 16 20 N -0.49 -5.39 4.75 -170.76 -0.81 -6.20 16 21 C 0.16 1.75 5.65 -83.61 -0.47 1.27 16 22 C -0.23 -2.23 8.88 -39.24 -0.35 -2.58 16 23 C 0.12 1.20 11.17 -17.60 -0.20 1.00 16 24 N -0.51 -5.76 10.36 -13.35 -0.14 -5.90 16 25 C 0.12 1.17 11.17 -17.61 -0.20 0.97 16 26 C -0.20 -1.97 9.28 -39.25 -0.36 -2.33 16 27 C 0.06 0.60 3.59 -3.76 -0.01 0.59 16 28 C 0.08 0.86 2.36 -67.65 -0.16 0.70 16 29 H 0.05 0.55 6.85 -51.93 -0.36 0.19 16 30 C -0.15 -1.39 8.70 37.16 0.32 -1.07 16 31 H 0.06 0.82 6.77 -51.93 -0.35 0.47 16 32 H 0.07 0.77 6.07 -51.93 -0.32 0.46 16 33 H 0.06 0.62 6.76 -51.93 -0.35 0.26 16 34 H 0.04 0.57 7.32 -51.93 -0.38 0.19 16 35 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.05 0.68 6.10 -51.93 -0.32 0.36 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 38 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.04 0.53 6.54 -51.93 -0.34 0.19 16 41 H 0.11 1.86 5.90 -51.92 -0.31 1.56 16 42 H 0.09 0.91 6.89 -51.93 -0.36 0.56 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.14 1.12 5.97 -52.49 -0.31 0.81 16 45 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 47 H 0.14 1.15 7.27 -52.48 -0.38 0.77 16 48 H 0.06 0.67 7.63 -51.93 -0.40 0.27 16 49 H 0.09 0.72 7.20 -51.93 -0.37 0.35 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -33.77 394.76 -9.90 -43.67 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.98 Total: 1.18 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.26 Total: 3.75 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -1.66 Total: -58.76 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.77 -9.90 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887131307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.420 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds