Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47022 * 2 1 4 4 C 1.53001 * 109.46900 * 120.00062 * 2 1 3 5 5 C 1.50704 * 109.47117 * 184.99824 * 4 2 1 6 6 C 1.38665 * 120.42020 * 269.72408 * 5 4 2 7 7 C 1.38630 * 118.42090 * 179.78237 * 6 5 4 8 8 C 1.38231 * 119.16098 * 0.50739 * 7 6 5 9 9 N 1.31854 * 120.76160 * 359.73013 * 8 7 6 10 10 C 1.31886 * 121.72514 * 0.02562 * 9 8 7 11 11 N 1.46501 * 109.47281 * 239.99829 * 2 1 3 12 12 C 1.34775 * 119.99958 * 84.99650 * 11 2 1 13 13 O 1.21585 * 119.99819 * 5.40804 * 12 11 2 14 14 N 1.34778 * 120.00306 * 185.39841 * 12 11 2 15 15 C 1.46956 * 120.59835 * 186.01538 * 14 12 11 16 16 C 1.53369 * 108.63995 * 235.25227 * 15 14 12 17 17 H 1.08999 * 109.60822 * 70.31904 * 16 15 14 18 18 C 1.52997 * 109.75525 * 190.74835 * 16 15 14 19 19 N 1.46964 * 108.63255 * 310.57568 * 16 15 14 20 20 C 1.36939 * 120.59661 * 235.20136 * 19 16 15 21 21 H 1.07995 * 120.00048 * 127.07870 * 20 19 16 22 22 C 1.38812 * 119.99738 * 307.08263 * 20 19 16 23 23 N 1.31616 * 119.99919 * 336.95792 * 22 20 19 24 24 Si 1.86796 * 119.99971 * 156.95204 * 22 20 19 25 25 H 1.48496 * 109.47486 * 270.00463 * 24 22 20 26 26 H 1.48506 * 109.47072 * 30.00177 * 24 22 20 27 27 H 1.48498 * 109.47281 * 149.99923 * 24 22 20 28 28 C 1.46965 * 118.81216 * 55.47496 * 19 16 15 29 29 H 1.09004 * 109.61044 * 64.26991 * 28 19 16 30 30 C 1.53003 * 109.61182 * 184.77670 * 28 19 16 31 31 C 1.46964 * 120.59134 * 6.04176 * 14 12 11 32 32 H 1.09003 * 109.46786 * 60.00404 * 1 2 3 33 33 H 1.09004 * 109.47444 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47377 * 299.99924 * 1 2 3 35 35 H 1.09000 * 109.46906 * 304.99824 * 4 2 1 36 36 H 1.08992 * 109.47225 * 65.00197 * 4 2 1 37 37 H 1.08003 * 120.79085 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.42072 * 180.21875 * 7 6 5 39 39 H 1.07999 * 119.61540 * 179.74752 * 8 7 6 40 40 H 1.07998 * 119.61767 * 180.02562 * 10 9 8 41 41 H 0.96995 * 120.00173 * 265.00508 * 11 2 1 42 42 H 1.09004 * 109.61182 * 115.50332 * 15 14 12 43 43 H 1.09000 * 109.75132 * 355.08077 * 15 14 12 44 44 H 1.09000 * 109.47235 * 187.17567 * 18 16 15 45 45 H 1.09001 * 109.46962 * 307.17298 * 18 16 15 46 46 H 1.08998 * 109.47018 * 67.17006 * 18 16 15 47 47 H 0.97010 * 119.99905 * 175.06768 * 23 22 20 48 48 H 1.08997 * 109.46788 * 63.48591 * 30 28 19 49 49 H 1.08995 * 109.47286 * 183.49199 * 30 28 19 50 50 H 1.08998 * 109.46897 * 303.49227 * 30 28 19 51 51 H 1.08999 * 109.61095 * 244.49299 * 31 14 12 52 52 H 1.09008 * 109.60987 * 4.83192 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 6 4.3398 -1.5827 0.7216 7 6 5.7166 -1.4415 0.8011 8 6 6.2445 -0.3540 1.4715 9 7 5.4549 0.5446 2.0262 10 6 4.1412 0.4449 1.9662 11 7 2.0184 -0.6906 -1.1961 12 6 2.1470 -0.0183 -2.3571 13 8 1.9525 1.1814 -2.3896 14 7 2.4915 -0.6759 -3.4821 15 6 2.7637 0.0597 -4.7248 16 6 1.8579 -0.4949 -5.8312 17 1 0.8249 -0.2060 -5.6373 18 6 2.2999 0.0585 -7.1874 19 7 1.9673 -1.9604 -5.8371 20 6 2.3164 -2.6287 -6.9803 21 1 3.1377 -3.3297 -6.9666 22 6 1.6144 -2.4049 -8.1568 23 7 0.3844 -1.9389 -8.1107 24 14 2.4156 -2.7649 -9.8053 25 1 3.1222 -1.5513 -10.2880 26 1 3.3891 -3.8756 -9.6505 27 1 1.3727 -3.1543 -10.7881 28 6 1.6896 -2.6965 -4.5958 29 1 0.6448 -2.5608 -4.3159 30 6 1.9796 -4.1841 -4.8050 31 6 2.6009 -2.1414 -3.4880 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.6053 -0.2617 2.1369 36 1 1.7516 -1.7715 1.2056 37 1 3.8992 -2.4245 0.2079 38 1 6.3686 -2.1744 0.3490 39 1 7.3161 -0.2389 1.5415 40 1 3.5267 1.2008 2.4323 41 1 2.2490 -1.6318 -1.1526 42 1 3.8084 -0.0724 -5.0068 43 1 2.5556 1.1196 -4.5787 44 1 1.5798 -0.2344 -7.9515 45 1 2.3531 1.1460 -7.1361 46 1 3.2816 -0.3417 -7.4406 47 1 -0.0805 -1.7148 -8.9321 48 1 3.0400 -4.3213 -5.0163 49 1 1.7143 -4.7363 -3.9035 50 1 1.3910 -4.5544 -5.6443 51 1 3.6339 -2.4303 -3.6819 52 1 2.2860 -2.5357 -2.5218 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898312778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = 37.060192 kcal Electronic energy + Delta-G solvation = -32046.621539 eV Core-core repulsion = 28047.100471 eV Total energy + Delta-G solvation = -3999.521067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.56871 -39.86920 -37.69328 -36.21797 -34.25958 -33.08402 -32.72246 -32.16676 -31.39497 -30.23608 -27.74512 -26.99804 -26.15582 -25.55012 -23.86485 -23.70184 -22.64779 -21.23437 -20.39638 -20.10304 -19.19566 -17.74948 -17.30639 -16.70977 -16.16005 -16.05079 -15.58074 -15.05215 -14.94640 -14.57424 -14.36221 -14.25447 -14.05032 -13.74399 -13.70211 -13.28986 -13.11650 -12.97698 -12.91577 -12.57079 -12.30149 -12.16580 -12.06106 -11.67341 -11.51568 -11.48696 -11.40457 -11.11837 -10.90029 -10.86316 -10.55997 -10.48684 -10.32835 -10.05633 -9.96617 -9.91208 -9.77934 -9.64442 -9.53528 -9.18595 -8.91937 -8.30223 -7.90764 -6.46817 -5.77113 -3.60272 0.90405 1.09045 2.98184 3.29768 3.38726 3.40082 3.58103 3.60099 4.16544 4.22589 4.39889 4.47812 4.56308 4.71268 4.77984 4.80779 5.08890 5.11891 5.14850 5.21284 5.33866 5.46927 5.50880 5.57748 5.61641 5.64981 5.66830 5.80314 5.88591 5.93089 6.00882 6.09642 6.17166 6.19988 6.27055 6.30195 6.35403 6.45765 6.49731 6.60370 6.70677 6.77951 6.87709 6.95873 7.01189 7.18082 7.35479 7.46978 7.67136 7.77707 7.81042 8.31908 8.54652 8.97136 9.12850 9.66698 10.43981 11.09973 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.002867 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.484662 B = 9762.316393 C =10151.133488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.089 0.911 4 C -0.085 4.085 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.168 4.168 8 C 0.090 3.910 9 N -0.484 5.484 10 C 0.101 3.899 11 N -0.745 5.745 12 C 0.706 3.294 13 O -0.600 6.600 14 N -0.615 5.615 15 C 0.113 3.887 16 C 0.183 3.817 17 H 0.031 0.969 18 C -0.144 4.144 19 N -0.575 5.575 20 C -0.267 4.267 21 H 0.054 0.946 22 C 0.040 3.960 23 N -0.869 5.869 24 Si 0.879 3.121 25 H -0.281 1.281 26 H -0.275 1.275 27 H -0.291 1.291 28 C 0.157 3.843 29 H 0.028 0.972 30 C -0.128 4.128 31 C 0.101 3.899 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.391 0.609 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.024 0.976 46 H 0.052 0.948 47 H 0.255 0.745 48 H 0.050 0.950 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -1.214 18.722 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.107 0.893 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.094 4.094 7 C -0.188 4.188 8 C -0.066 4.066 9 N -0.192 5.192 10 C -0.056 4.056 11 N -0.404 5.404 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.350 5.350 15 C -0.011 4.011 16 C 0.076 3.924 17 H 0.049 0.951 18 C -0.202 4.202 19 N -0.300 5.300 20 C -0.396 4.396 21 H 0.071 0.929 22 C -0.163 4.163 23 N -0.508 5.508 24 Si 0.707 3.293 25 H -0.207 1.207 26 H -0.200 1.200 27 H -0.217 1.217 28 C 0.050 3.950 29 H 0.046 0.954 30 C -0.186 4.186 31 C -0.024 4.024 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.227 0.773 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.103 0.351 18.990 19.667 hybrid contribution 0.065 -1.379 -1.455 2.006 sum 5.168 -1.028 17.535 18.310 Atomic orbital electron populations 1.22217 0.95148 1.02209 1.02691 1.20710 0.93600 0.97334 0.82409 0.89283 1.20908 0.90448 1.02324 0.98665 1.20819 0.96849 0.96254 0.99025 1.21452 0.93609 0.98151 0.96215 1.22154 0.95936 0.99940 1.00751 1.22741 1.00026 0.90178 0.93691 1.67670 1.05560 1.27713 1.18256 1.22655 0.90887 0.96036 0.96020 1.45320 1.72703 1.13520 1.08830 1.15858 0.77948 0.85021 0.80381 1.90856 1.58817 1.13066 1.85232 1.47185 1.71813 1.06897 1.09139 1.22318 0.99684 0.96019 0.83116 1.20602 0.95078 0.84478 0.92216 0.95141 1.22004 1.03122 0.96252 0.98782 1.43977 1.80426 0.99592 1.05974 1.18655 1.10071 1.24068 0.86829 0.92872 1.25488 0.93629 0.98063 0.99149 1.70226 1.08551 1.44746 1.27258 0.86711 0.79225 0.78688 0.84712 1.20742 1.19959 1.21688 1.20919 0.94643 0.91811 0.87666 0.95400 1.21668 1.01814 0.94818 1.00300 1.22393 1.01023 0.79686 0.99294 0.91636 0.92456 0.91778 0.88925 0.90133 0.85216 0.84794 0.82959 0.82939 0.77290 0.92516 0.90297 0.89233 0.95663 0.92890 0.93523 0.93045 0.94636 0.91060 0.91982 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.17 1.79 2.61 -67.93 -0.18 1.61 16 3 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 4 C -0.08 -0.64 4.92 -27.88 -0.14 -0.78 16 5 C -0.13 -1.19 4.96 -104.48 -0.52 -1.71 16 6 C -0.07 -0.62 9.28 -39.28 -0.36 -0.99 16 7 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 8 C 0.09 0.91 11.18 -17.54 -0.20 0.71 16 9 N -0.48 -5.70 10.36 -13.25 -0.14 -5.84 16 10 C 0.10 1.05 10.86 -17.55 -0.19 0.86 16 11 N -0.75 -9.69 4.40 -58.68 -0.26 -9.95 16 12 C 0.71 12.59 8.26 -86.92 -0.72 11.88 16 13 O -0.60 -12.81 15.39 5.29 0.08 -12.73 16 14 N -0.62 -11.22 2.95 -177.95 -0.52 -11.74 16 15 C 0.11 2.27 5.91 -3.60 -0.02 2.25 16 16 C 0.18 4.16 3.26 -67.49 -0.22 3.94 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 18 C -0.14 -3.22 7.83 37.16 0.29 -2.93 16 19 N -0.58 -13.36 2.75 -156.77 -0.43 -13.79 16 20 C -0.27 -6.67 6.57 -15.06 -0.10 -6.77 16 21 H 0.05 1.35 7.28 -52.49 -0.38 0.97 16 22 C 0.04 1.02 3.15 -17.43 -0.05 0.96 16 23 N -0.87 -23.79 11.82 55.49 0.66 -23.14 16 24 Si 0.88 20.18 29.62 -169.99 -5.03 15.15 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.16 3.09 3.67 -67.25 -0.25 2.85 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 C -0.13 -2.27 8.19 37.16 0.30 -1.96 16 31 C 0.10 1.64 5.85 -3.37 -0.02 1.62 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.13 0.95 7.66 -52.48 -0.40 0.55 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.39 4.29 5.52 -40.82 -0.23 4.06 16 42 H 0.06 1.12 8.12 -51.93 -0.42 0.69 16 43 H 0.08 1.63 7.00 -51.93 -0.36 1.27 16 44 H 0.09 2.24 4.91 -51.93 -0.26 1.98 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 1.19 7.55 -51.93 -0.39 0.80 16 47 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 48 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 1.45 7.55 -51.93 -0.39 1.06 16 51 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 52 H 0.06 0.75 5.72 -51.92 -0.30 0.45 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -31.67 404.98 -10.50 -42.17 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.54 Total: 5.48 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.41 Total: 8.28 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.70 Total: -64.46 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.67 -10.50 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898312778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.235 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds