Wall clock time and date at job start Wed Apr 1 2020 05:12:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.47022 * 2 1
4 4 C 1.53001 * 109.46900 * 120.00062 * 2 1 3
5 5 C 1.50704 * 109.47117 * 184.99824 * 4 2 1
6 6 C 1.38665 * 120.42020 * 269.72408 * 5 4 2
7 7 C 1.38630 * 118.42090 * 179.78237 * 6 5 4
8 8 C 1.38231 * 119.16098 * 0.50739 * 7 6 5
9 9 N 1.31854 * 120.76160 * 359.73013 * 8 7 6
10 10 C 1.31886 * 121.72514 * 0.02562 * 9 8 7
11 11 N 1.46501 * 109.47281 * 239.99829 * 2 1 3
12 12 C 1.34775 * 119.99958 * 84.99650 * 11 2 1
13 13 O 1.21585 * 119.99819 * 5.40804 * 12 11 2
14 14 N 1.34778 * 120.00306 * 185.39841 * 12 11 2
15 15 C 1.46956 * 120.59835 * 186.01538 * 14 12 11
16 16 C 1.53369 * 108.63995 * 235.25227 * 15 14 12
17 17 H 1.08999 * 109.60822 * 70.31904 * 16 15 14
18 18 C 1.52997 * 109.75525 * 190.74835 * 16 15 14
19 19 N 1.46964 * 108.63255 * 310.57568 * 16 15 14
20 20 C 1.36939 * 120.59661 * 235.20136 * 19 16 15
21 21 H 1.07995 * 120.00048 * 127.07870 * 20 19 16
22 22 C 1.38812 * 119.99738 * 307.08263 * 20 19 16
23 23 N 1.31616 * 119.99919 * 336.95792 * 22 20 19
24 24 Si 1.86796 * 119.99971 * 156.95204 * 22 20 19
25 25 H 1.48496 * 109.47486 * 270.00463 * 24 22 20
26 26 H 1.48506 * 109.47072 * 30.00177 * 24 22 20
27 27 H 1.48498 * 109.47281 * 149.99923 * 24 22 20
28 28 C 1.46965 * 118.81216 * 55.47496 * 19 16 15
29 29 H 1.09004 * 109.61044 * 64.26991 * 28 19 16
30 30 C 1.53003 * 109.61182 * 184.77670 * 28 19 16
31 31 C 1.46964 * 120.59134 * 6.04176 * 14 12 11
32 32 H 1.09003 * 109.46786 * 60.00404 * 1 2 3
33 33 H 1.09004 * 109.47444 * 179.97438 * 1 2 3
34 34 H 1.08996 * 109.47377 * 299.99924 * 1 2 3
35 35 H 1.09000 * 109.46906 * 304.99824 * 4 2 1
36 36 H 1.08992 * 109.47225 * 65.00197 * 4 2 1
37 37 H 1.08003 * 120.79085 * 0.02562 * 6 5 4
38 38 H 1.08007 * 120.42072 * 180.21875 * 7 6 5
39 39 H 1.07999 * 119.61540 * 179.74752 * 8 7 6
40 40 H 1.07998 * 119.61767 * 180.02562 * 10 9 8
41 41 H 0.96995 * 120.00173 * 265.00508 * 11 2 1
42 42 H 1.09004 * 109.61182 * 115.50332 * 15 14 12
43 43 H 1.09000 * 109.75132 * 355.08077 * 15 14 12
44 44 H 1.09000 * 109.47235 * 187.17567 * 18 16 15
45 45 H 1.09001 * 109.46962 * 307.17298 * 18 16 15
46 46 H 1.08998 * 109.47018 * 67.17006 * 18 16 15
47 47 H 0.97010 * 119.99905 * 175.06768 * 23 22 20
48 48 H 1.08997 * 109.46788 * 63.48591 * 30 28 19
49 49 H 1.08995 * 109.47286 * 183.49199 * 30 28 19
50 50 H 1.08998 * 109.46897 * 303.49227 * 30 28 19
51 51 H 1.08999 * 109.61095 * 244.49299 * 31 14 12
52 52 H 1.09008 * 109.60987 * 4.83192 * 31 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7213 1.2493
5 6 3.5419 -0.6150 1.3128
6 6 4.3398 -1.5827 0.7216
7 6 5.7166 -1.4415 0.8011
8 6 6.2445 -0.3540 1.4715
9 7 5.4549 0.5446 2.0262
10 6 4.1412 0.4449 1.9662
11 7 2.0184 -0.6906 -1.1961
12 6 2.1470 -0.0183 -2.3571
13 8 1.9525 1.1814 -2.3896
14 7 2.4915 -0.6759 -3.4821
15 6 2.7637 0.0597 -4.7248
16 6 1.8579 -0.4949 -5.8312
17 1 0.8249 -0.2060 -5.6373
18 6 2.2999 0.0585 -7.1874
19 7 1.9673 -1.9604 -5.8371
20 6 2.3164 -2.6287 -6.9803
21 1 3.1377 -3.3297 -6.9666
22 6 1.6144 -2.4049 -8.1568
23 7 0.3844 -1.9389 -8.1107
24 14 2.4156 -2.7649 -9.8053
25 1 3.1222 -1.5513 -10.2880
26 1 3.3891 -3.8756 -9.6505
27 1 1.3727 -3.1543 -10.7881
28 6 1.6896 -2.6965 -4.5958
29 1 0.6448 -2.5608 -4.3159
30 6 1.9796 -4.1841 -4.8050
31 6 2.6009 -2.1414 -3.4880
32 1 -0.3633 0.5138 -0.8901
33 1 -0.3634 -1.0277 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 1.6053 -0.2617 2.1369
36 1 1.7516 -1.7715 1.2056
37 1 3.8992 -2.4245 0.2079
38 1 6.3686 -2.1744 0.3490
39 1 7.3161 -0.2389 1.5415
40 1 3.5267 1.2008 2.4323
41 1 2.2490 -1.6318 -1.1526
42 1 3.8084 -0.0724 -5.0068
43 1 2.5556 1.1196 -4.5787
44 1 1.5798 -0.2344 -7.9515
45 1 2.3531 1.1460 -7.1361
46 1 3.2816 -0.3417 -7.4406
47 1 -0.0805 -1.7148 -8.9321
48 1 3.0400 -4.3213 -5.0163
49 1 1.7143 -4.7363 -3.9035
50 1 1.3910 -4.5544 -5.6443
51 1 3.6339 -2.4303 -3.6819
52 1 2.2860 -2.5357 -2.5218
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000898312778.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:44
Heat of formation + Delta-G solvation = 18.215417 kcal
Electronic energy + Delta-G solvation = -32047.438710 eV
Core-core repulsion = 28047.100471 eV
Total energy + Delta-G solvation = -4000.338238 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.57658 -40.94246 -39.20066 -37.32420 -35.91595 -34.45383 -33.93418 -33.24534
-32.70624 -31.30846 -29.49244 -27.70923 -27.62170 -27.23688 -25.45150 -24.47158
-23.49433 -22.27368 -21.94053 -21.56095 -20.73420 -19.12858 -17.97018 -17.95514
-17.65854 -17.05450 -16.82230 -16.45621 -16.27637 -16.19415 -15.71208 -15.53028
-15.28960 -14.90845 -14.75427 -14.72469 -14.21554 -13.96930 -13.84747 -13.64924
-13.54669 -13.36605 -13.24096 -13.07550 -13.00283 -12.91590 -12.61454 -12.53484
-12.30431 -12.22070 -12.21531 -12.13457 -11.95323 -11.71396 -11.63980 -11.49963
-11.09998 -10.66497 -10.37579 -10.24036 -10.11486 -9.81211 -9.47215 -8.40323
-7.67920 -5.58591 0.21757 0.40744 1.45958 1.51162 1.56008 1.70591
2.19148 2.51026 2.89352 2.96930 3.22983 3.52423 3.57388 3.81218
3.93172 3.99477 4.12727 4.13492 4.16441 4.25696 4.30379 4.37521
4.41659 4.47768 4.50507 4.60865 4.65211 4.74505 4.78031 4.84494
4.87422 4.88413 4.91262 4.96125 4.97142 5.00532 5.09495 5.19627
5.24243 5.34795 5.36808 5.41118 5.48998 5.58492 5.66830 5.69982
5.74819 5.83658 5.84897 6.09399 6.58170 7.03759 7.07641 7.22578
7.61273 7.79356 8.52901 9.13254
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.016688 B = 0.002867 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.484662 B = 9762.316393 C =10151.133488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.164 3.836
3 H 0.062 0.938
4 C -0.072 4.072
5 C -0.132 4.132
6 C -0.077 4.077
7 C -0.172 4.172
8 C 0.073 3.927
9 N -0.516 5.516
10 C 0.082 3.918
11 N -0.726 5.726
12 C 0.702 3.298
13 O -0.641 6.641
14 N -0.622 5.622
15 C 0.127 3.873
16 C 0.186 3.814
17 H -0.011 1.011
18 C -0.136 4.136
19 N -0.589 5.589
20 C -0.260 4.260
21 H 0.055 0.945
22 C 0.000 4.000
23 N -0.906 5.906
24 Si 0.931 3.069
25 H -0.280 1.280
26 H -0.264 1.264
27 H -0.300 1.300
28 C 0.148 3.852
29 H 0.002 0.998
30 C -0.117 4.117
31 C 0.112 3.888
32 H 0.025 0.975
33 H 0.072 0.928
34 H 0.089 0.911
35 H 0.116 0.884
36 H 0.104 0.896
37 H 0.153 0.847
38 H 0.156 0.844
39 H 0.168 0.832
40 H 0.164 0.836
41 H 0.404 0.596
42 H 0.065 0.935
43 H 0.068 0.932
44 H 0.064 0.936
45 H 0.044 0.956
46 H 0.051 0.949
47 H 0.249 0.751
48 H 0.056 0.944
49 H 0.077 0.923
50 H 0.036 0.964
51 H 0.075 0.925
52 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.259 -3.197 20.795 21.951
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.059 3.941
3 H 0.080 0.920
4 C -0.110 4.110
5 C -0.134 4.134
6 C -0.103 4.103
7 C -0.191 4.191
8 C -0.084 4.084
9 N -0.225 5.225
10 C -0.075 4.075
11 N -0.385 5.385
12 C 0.403 3.597
13 O -0.523 6.523
14 N -0.357 5.357
15 C 0.002 3.998
16 C 0.079 3.921
17 H 0.007 0.993
18 C -0.194 4.194
19 N -0.314 5.314
20 C -0.390 4.390
21 H 0.072 0.928
22 C -0.199 4.199
23 N -0.548 5.548
24 Si 0.758 3.242
25 H -0.207 1.207
26 H -0.189 1.189
27 H -0.227 1.227
28 C 0.041 3.959
29 H 0.020 0.980
30 C -0.175 4.175
31 C -0.012 4.012
32 H 0.045 0.955
33 H 0.091 0.909
34 H 0.108 0.892
35 H 0.135 0.865
36 H 0.123 0.877
37 H 0.170 0.830
38 H 0.174 0.826
39 H 0.185 0.815
40 H 0.181 0.819
41 H 0.243 0.757
42 H 0.084 0.916
43 H 0.086 0.914
44 H 0.082 0.918
45 H 0.062 0.938
46 H 0.070 0.930
47 H 0.059 0.941
48 H 0.075 0.925
49 H 0.096 0.904
50 H 0.055 0.945
51 H 0.093 0.907
52 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 6.343 -1.682 21.114 22.111
hybrid contribution -0.340 -0.754 -2.028 2.190
sum 6.003 -2.437 19.087 20.156
Atomic orbital electron populations
1.22171 0.94557 1.02965 1.02054 1.20848 0.93967 0.96418 0.82836
0.91964 1.20882 0.89227 1.03485 0.97428 1.20996 0.97786 0.95941
0.98697 1.21826 0.93754 0.98689 0.96002 1.22448 0.96554 0.99907
1.00220 1.23126 1.00875 0.90477 0.93898 1.67650 1.06486 1.28898
1.19478 1.22976 0.90827 0.96962 0.96690 1.45224 1.71414 1.13968
1.07844 1.16062 0.77620 0.84682 0.81292 1.90830 1.60437 1.15110
1.85945 1.47194 1.72025 1.07726 1.08712 1.21943 0.99156 0.95477
0.83248 1.20453 0.93441 0.84850 0.93342 0.99312 1.21880 1.02018
0.97529 0.98021 1.44224 1.80461 0.99866 1.06874 1.18822 1.09392
1.23284 0.87534 0.92762 1.26020 0.93789 0.98462 1.01660 1.70331
1.10006 1.46964 1.27452 0.85881 0.78243 0.78647 0.81409 1.20670
1.18868 1.22679 1.21130 0.94204 0.93202 0.87335 0.98029 1.21555
1.01483 0.93440 1.00993 1.22345 1.00811 0.78188 0.99814 0.95524
0.90926 0.89208 0.86537 0.87715 0.82959 0.82630 0.81471 0.81898
0.75694 0.91627 0.91377 0.91750 0.93753 0.92961 0.94140 0.92470
0.90424 0.94487 0.90687 0.88212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.96 9.48 71.98 0.68 -2.27 16
2 C 0.16 3.20 2.61 44.99 0.12 3.31 16
3 H 0.06 1.59 7.50 -2.39 -0.02 1.58 16
4 C -0.07 -0.82 4.92 29.85 0.15 -0.67 16
5 C -0.13 -2.10 4.96 -19.77 -0.10 -2.19 16
6 C -0.08 -1.14 9.28 22.47 0.21 -0.93 16
7 C -0.17 -2.66 10.11 22.36 0.23 -2.43 16
8 C 0.07 1.36 11.18 84.69 0.95 2.30 16
9 N -0.52 -11.74 10.36 -195.84 -2.03 -13.77 16
10 C 0.08 1.59 10.86 84.67 0.92 2.51 16
11 N -0.73 -17.03 4.40 -457.82 -2.02 -19.05 16
12 C 0.70 24.31 8.26 179.05 1.48 25.79 16
13 O -0.64 -27.65 15.39 -3.98 -0.06 -27.71 16
14 N -0.62 -21.87 2.95 -835.17 -2.46 -24.33 16
15 C 0.13 5.09 5.91 86.42 0.51 5.61 16
16 C 0.19 8.64 3.26 45.03 0.15 8.79 16
17 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
18 C -0.14 -6.23 7.83 71.98 0.56 -5.67 16
19 N -0.59 -27.42 2.75 -649.89 -1.79 -29.21 16
20 C -0.26 -13.00 6.57 84.03 0.55 -12.44 16
21 H 0.05 2.69 7.28 -2.91 -0.02 2.67 16
22 C 0.00 0.01 3.15 84.86 0.27 0.28 16
23 N -0.91 -51.20 11.82 21.65 0.26 -50.94 16
24 Si 0.93 41.77 29.62 68.60 2.03 43.80 16
25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16
27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16
28 C 0.15 5.65 3.67 45.18 0.17 5.81 16
29 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16
30 C -0.12 -3.86 8.19 71.98 0.59 -3.27 16
31 C 0.11 3.30 5.85 86.56 0.51 3.81 16
32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
35 H 0.12 0.84 8.09 -2.39 -0.02 0.82 16
36 H 0.10 0.75 8.09 -2.39 -0.02 0.74 16
37 H 0.15 1.47 7.66 -2.91 -0.02 1.44 16
38 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16
39 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16
40 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16
41 H 0.40 7.13 5.52 -92.71 -0.51 6.62 16
42 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16
43 H 0.07 2.87 7.00 -2.39 -0.02 2.85 16
44 H 0.06 3.31 4.91 -2.39 -0.01 3.30 16
45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
46 H 0.05 2.34 7.55 -2.39 -0.02 2.33 16
47 H 0.25 13.78 8.32 -92.70 -0.77 13.00 16
48 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16
49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
50 H 0.04 1.47 7.55 -2.39 -0.02 1.45 16
51 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16
52 H 0.10 2.08 5.72 -2.38 -0.01 2.07 16
Total: -1.00 -72.92 404.98 2.26 -70.66
By element:
Atomic # 1 Polarization: 21.83 SS G_CDS: 0.40 Total: 22.23 kcal
Atomic # 6 Polarization: 20.39 SS G_CDS: 7.93 Total: 28.32 kcal
Atomic # 7 Polarization: -129.26 SS G_CDS: -8.04 Total: -137.30 kcal
Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.71 kcal
Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal
Total: -72.92 2.26 -70.66 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000898312778.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.879 kcal
(2) G-P(sol) polarization free energy of solvation -72.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.956 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds