Wall clock time and date at job start Wed Apr 1 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47022 * 2 1 4 4 C 1.53001 * 109.46900 * 120.00062 * 2 1 3 5 5 C 1.50704 * 109.47117 * 184.99824 * 4 2 1 6 6 C 1.38665 * 120.42020 * 269.72408 * 5 4 2 7 7 C 1.38630 * 118.42090 * 179.78237 * 6 5 4 8 8 C 1.38231 * 119.16098 * 0.50739 * 7 6 5 9 9 N 1.31854 * 120.76160 * 359.73013 * 8 7 6 10 10 C 1.31886 * 121.72514 * 0.02562 * 9 8 7 11 11 N 1.46501 * 109.47281 * 239.99829 * 2 1 3 12 12 C 1.34775 * 119.99958 * 84.99650 * 11 2 1 13 13 O 1.21585 * 119.99819 * 5.40804 * 12 11 2 14 14 N 1.34778 * 120.00306 * 185.39841 * 12 11 2 15 15 C 1.46956 * 120.59835 * 186.01538 * 14 12 11 16 16 C 1.53369 * 108.63995 * 235.25227 * 15 14 12 17 17 H 1.08999 * 109.60822 * 70.31904 * 16 15 14 18 18 C 1.52997 * 109.75525 * 190.74835 * 16 15 14 19 19 N 1.46964 * 108.63255 * 310.57568 * 16 15 14 20 20 C 1.36939 * 120.59661 * 235.20136 * 19 16 15 21 21 H 1.07995 * 120.00048 * 127.07870 * 20 19 16 22 22 C 1.38812 * 119.99738 * 307.08263 * 20 19 16 23 23 N 1.31616 * 119.99919 * 336.95792 * 22 20 19 24 24 Si 1.86796 * 119.99971 * 156.95204 * 22 20 19 25 25 H 1.48496 * 109.47486 * 270.00463 * 24 22 20 26 26 H 1.48506 * 109.47072 * 30.00177 * 24 22 20 27 27 H 1.48498 * 109.47281 * 149.99923 * 24 22 20 28 28 C 1.46965 * 118.81216 * 55.47496 * 19 16 15 29 29 H 1.09004 * 109.61044 * 64.26991 * 28 19 16 30 30 C 1.53003 * 109.61182 * 184.77670 * 28 19 16 31 31 C 1.46964 * 120.59134 * 6.04176 * 14 12 11 32 32 H 1.09003 * 109.46786 * 60.00404 * 1 2 3 33 33 H 1.09004 * 109.47444 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47377 * 299.99924 * 1 2 3 35 35 H 1.09000 * 109.46906 * 304.99824 * 4 2 1 36 36 H 1.08992 * 109.47225 * 65.00197 * 4 2 1 37 37 H 1.08003 * 120.79085 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.42072 * 180.21875 * 7 6 5 39 39 H 1.07999 * 119.61540 * 179.74752 * 8 7 6 40 40 H 1.07998 * 119.61767 * 180.02562 * 10 9 8 41 41 H 0.96995 * 120.00173 * 265.00508 * 11 2 1 42 42 H 1.09004 * 109.61182 * 115.50332 * 15 14 12 43 43 H 1.09000 * 109.75132 * 355.08077 * 15 14 12 44 44 H 1.09000 * 109.47235 * 187.17567 * 18 16 15 45 45 H 1.09001 * 109.46962 * 307.17298 * 18 16 15 46 46 H 1.08998 * 109.47018 * 67.17006 * 18 16 15 47 47 H 0.97010 * 119.99905 * 175.06768 * 23 22 20 48 48 H 1.08997 * 109.46788 * 63.48591 * 30 28 19 49 49 H 1.08995 * 109.47286 * 183.49199 * 30 28 19 50 50 H 1.08998 * 109.46897 * 303.49227 * 30 28 19 51 51 H 1.08999 * 109.61095 * 244.49299 * 31 14 12 52 52 H 1.09008 * 109.60987 * 4.83192 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 6 4.3398 -1.5827 0.7216 7 6 5.7166 -1.4415 0.8011 8 6 6.2445 -0.3540 1.4715 9 7 5.4549 0.5446 2.0262 10 6 4.1412 0.4449 1.9662 11 7 2.0184 -0.6906 -1.1961 12 6 2.1470 -0.0183 -2.3571 13 8 1.9525 1.1814 -2.3896 14 7 2.4915 -0.6759 -3.4821 15 6 2.7637 0.0597 -4.7248 16 6 1.8579 -0.4949 -5.8312 17 1 0.8249 -0.2060 -5.6373 18 6 2.2999 0.0585 -7.1874 19 7 1.9673 -1.9604 -5.8371 20 6 2.3164 -2.6287 -6.9803 21 1 3.1377 -3.3297 -6.9666 22 6 1.6144 -2.4049 -8.1568 23 7 0.3844 -1.9389 -8.1107 24 14 2.4156 -2.7649 -9.8053 25 1 3.1222 -1.5513 -10.2880 26 1 3.3891 -3.8756 -9.6505 27 1 1.3727 -3.1543 -10.7881 28 6 1.6896 -2.6965 -4.5958 29 1 0.6448 -2.5608 -4.3159 30 6 1.9796 -4.1841 -4.8050 31 6 2.6009 -2.1414 -3.4880 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.6053 -0.2617 2.1369 36 1 1.7516 -1.7715 1.2056 37 1 3.8992 -2.4245 0.2079 38 1 6.3686 -2.1744 0.3490 39 1 7.3161 -0.2389 1.5415 40 1 3.5267 1.2008 2.4323 41 1 2.2490 -1.6318 -1.1526 42 1 3.8084 -0.0724 -5.0068 43 1 2.5556 1.1196 -4.5787 44 1 1.5798 -0.2344 -7.9515 45 1 2.3531 1.1460 -7.1361 46 1 3.2816 -0.3417 -7.4406 47 1 -0.0805 -1.7148 -8.9321 48 1 3.0400 -4.3213 -5.0163 49 1 1.7143 -4.7363 -3.9035 50 1 1.3910 -4.5544 -5.6443 51 1 3.6339 -2.4303 -3.6819 52 1 2.2860 -2.5357 -2.5218 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898312778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:44 Heat of formation + Delta-G solvation = 18.215417 kcal Electronic energy + Delta-G solvation = -32047.438710 eV Core-core repulsion = 28047.100471 eV Total energy + Delta-G solvation = -4000.338238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.57658 -40.94246 -39.20066 -37.32420 -35.91595 -34.45383 -33.93418 -33.24534 -32.70624 -31.30846 -29.49244 -27.70923 -27.62170 -27.23688 -25.45150 -24.47158 -23.49433 -22.27368 -21.94053 -21.56095 -20.73420 -19.12858 -17.97018 -17.95514 -17.65854 -17.05450 -16.82230 -16.45621 -16.27637 -16.19415 -15.71208 -15.53028 -15.28960 -14.90845 -14.75427 -14.72469 -14.21554 -13.96930 -13.84747 -13.64924 -13.54669 -13.36605 -13.24096 -13.07550 -13.00283 -12.91590 -12.61454 -12.53484 -12.30431 -12.22070 -12.21531 -12.13457 -11.95323 -11.71396 -11.63980 -11.49963 -11.09998 -10.66497 -10.37579 -10.24036 -10.11486 -9.81211 -9.47215 -8.40323 -7.67920 -5.58591 0.21757 0.40744 1.45958 1.51162 1.56008 1.70591 2.19148 2.51026 2.89352 2.96930 3.22983 3.52423 3.57388 3.81218 3.93172 3.99477 4.12727 4.13492 4.16441 4.25696 4.30379 4.37521 4.41659 4.47768 4.50507 4.60865 4.65211 4.74505 4.78031 4.84494 4.87422 4.88413 4.91262 4.96125 4.97142 5.00532 5.09495 5.19627 5.24243 5.34795 5.36808 5.41118 5.48998 5.58492 5.66830 5.69982 5.74819 5.83658 5.84897 6.09399 6.58170 7.03759 7.07641 7.22578 7.61273 7.79356 8.52901 9.13254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.002867 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.484662 B = 9762.316393 C =10151.133488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.062 0.938 4 C -0.072 4.072 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.172 4.172 8 C 0.073 3.927 9 N -0.516 5.516 10 C 0.082 3.918 11 N -0.726 5.726 12 C 0.702 3.298 13 O -0.641 6.641 14 N -0.622 5.622 15 C 0.127 3.873 16 C 0.186 3.814 17 H -0.011 1.011 18 C -0.136 4.136 19 N -0.589 5.589 20 C -0.260 4.260 21 H 0.055 0.945 22 C 0.000 4.000 23 N -0.906 5.906 24 Si 0.931 3.069 25 H -0.280 1.280 26 H -0.264 1.264 27 H -0.300 1.300 28 C 0.148 3.852 29 H 0.002 0.998 30 C -0.117 4.117 31 C 0.112 3.888 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.404 0.596 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.056 0.944 49 H 0.077 0.923 50 H 0.036 0.964 51 H 0.075 0.925 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -3.197 20.795 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.080 0.920 4 C -0.110 4.110 5 C -0.134 4.134 6 C -0.103 4.103 7 C -0.191 4.191 8 C -0.084 4.084 9 N -0.225 5.225 10 C -0.075 4.075 11 N -0.385 5.385 12 C 0.403 3.597 13 O -0.523 6.523 14 N -0.357 5.357 15 C 0.002 3.998 16 C 0.079 3.921 17 H 0.007 0.993 18 C -0.194 4.194 19 N -0.314 5.314 20 C -0.390 4.390 21 H 0.072 0.928 22 C -0.199 4.199 23 N -0.548 5.548 24 Si 0.758 3.242 25 H -0.207 1.207 26 H -0.189 1.189 27 H -0.227 1.227 28 C 0.041 3.959 29 H 0.020 0.980 30 C -0.175 4.175 31 C -0.012 4.012 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.243 0.757 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.093 0.907 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.343 -1.682 21.114 22.111 hybrid contribution -0.340 -0.754 -2.028 2.190 sum 6.003 -2.437 19.087 20.156 Atomic orbital electron populations 1.22171 0.94557 1.02965 1.02054 1.20848 0.93967 0.96418 0.82836 0.91964 1.20882 0.89227 1.03485 0.97428 1.20996 0.97786 0.95941 0.98697 1.21826 0.93754 0.98689 0.96002 1.22448 0.96554 0.99907 1.00220 1.23126 1.00875 0.90477 0.93898 1.67650 1.06486 1.28898 1.19478 1.22976 0.90827 0.96962 0.96690 1.45224 1.71414 1.13968 1.07844 1.16062 0.77620 0.84682 0.81292 1.90830 1.60437 1.15110 1.85945 1.47194 1.72025 1.07726 1.08712 1.21943 0.99156 0.95477 0.83248 1.20453 0.93441 0.84850 0.93342 0.99312 1.21880 1.02018 0.97529 0.98021 1.44224 1.80461 0.99866 1.06874 1.18822 1.09392 1.23284 0.87534 0.92762 1.26020 0.93789 0.98462 1.01660 1.70331 1.10006 1.46964 1.27452 0.85881 0.78243 0.78647 0.81409 1.20670 1.18868 1.22679 1.21130 0.94204 0.93202 0.87335 0.98029 1.21555 1.01483 0.93440 1.00993 1.22345 1.00811 0.78188 0.99814 0.95524 0.90926 0.89208 0.86537 0.87715 0.82959 0.82630 0.81471 0.81898 0.75694 0.91627 0.91377 0.91750 0.93753 0.92961 0.94140 0.92470 0.90424 0.94487 0.90687 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.48 71.98 0.68 -2.27 16 2 C 0.16 3.20 2.61 44.99 0.12 3.31 16 3 H 0.06 1.59 7.50 -2.39 -0.02 1.58 16 4 C -0.07 -0.82 4.92 29.85 0.15 -0.67 16 5 C -0.13 -2.10 4.96 -19.77 -0.10 -2.19 16 6 C -0.08 -1.14 9.28 22.47 0.21 -0.93 16 7 C -0.17 -2.66 10.11 22.36 0.23 -2.43 16 8 C 0.07 1.36 11.18 84.69 0.95 2.30 16 9 N -0.52 -11.74 10.36 -195.84 -2.03 -13.77 16 10 C 0.08 1.59 10.86 84.67 0.92 2.51 16 11 N -0.73 -17.03 4.40 -457.82 -2.02 -19.05 16 12 C 0.70 24.31 8.26 179.05 1.48 25.79 16 13 O -0.64 -27.65 15.39 -3.98 -0.06 -27.71 16 14 N -0.62 -21.87 2.95 -835.17 -2.46 -24.33 16 15 C 0.13 5.09 5.91 86.42 0.51 5.61 16 16 C 0.19 8.64 3.26 45.03 0.15 8.79 16 17 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 18 C -0.14 -6.23 7.83 71.98 0.56 -5.67 16 19 N -0.59 -27.42 2.75 -649.89 -1.79 -29.21 16 20 C -0.26 -13.00 6.57 84.03 0.55 -12.44 16 21 H 0.05 2.69 7.28 -2.91 -0.02 2.67 16 22 C 0.00 0.01 3.15 84.86 0.27 0.28 16 23 N -0.91 -51.20 11.82 21.65 0.26 -50.94 16 24 Si 0.93 41.77 29.62 68.60 2.03 43.80 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 C 0.15 5.65 3.67 45.18 0.17 5.81 16 29 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 30 C -0.12 -3.86 8.19 71.98 0.59 -3.27 16 31 C 0.11 3.30 5.85 86.56 0.51 3.81 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.10 0.75 8.09 -2.39 -0.02 0.74 16 37 H 0.15 1.47 7.66 -2.91 -0.02 1.44 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.40 7.13 5.52 -92.71 -0.51 6.62 16 42 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 43 H 0.07 2.87 7.00 -2.39 -0.02 2.85 16 44 H 0.06 3.31 4.91 -2.39 -0.01 3.30 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 2.34 7.55 -2.39 -0.02 2.33 16 47 H 0.25 13.78 8.32 -92.70 -0.77 13.00 16 48 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.04 1.47 7.55 -2.39 -0.02 1.45 16 51 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 52 H 0.10 2.08 5.72 -2.38 -0.01 2.07 16 Total: -1.00 -72.92 404.98 2.26 -70.66 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.40 Total: 22.23 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 7.93 Total: 28.32 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -8.04 Total: -137.30 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.71 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.92 2.26 -70.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898312778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.879 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds