Wall clock time and date at job start Wed Apr 1 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.63452 * 2 1 4 4 C 1.54322 * 110.71945 * 123.14161 * 2 1 3 5 5 N 1.47022 * 107.26844 * 140.73763 * 4 2 1 6 6 C 1.34779 * 125.64706 * 181.08001 * 5 4 2 7 7 O 1.21597 * 120.00007 * 174.97001 * 6 5 4 8 8 C 1.47427 * 120.00011 * 354.96736 * 6 5 4 9 9 C 1.41301 * 126.41353 * 5.38882 * 8 6 5 10 10 N 1.30447 * 108.01757 * 179.88181 * 9 8 6 11 11 N 1.39936 * 108.90242 * 0.38853 * 10 9 8 12 12 C 1.46498 * 125.75389 * 179.73219 * 11 10 9 13 13 C 1.52999 * 109.47189 * 305.01938 * 12 11 10 14 14 C 1.54266 * 110.03474 * 292.17179 * 13 12 11 15 15 C 1.54893 * 104.19493 * 217.10658 * 14 13 12 16 16 C 1.54881 * 102.74859 * 37.93788 * 15 14 13 17 17 C 1.53872 * 110.03205 * 174.99878 * 13 12 11 18 18 C 1.34264 * 108.48962 * 359.74705 * 11 10 9 19 19 C 1.47427 * 108.70491 * 1.05684 * 5 4 2 20 20 C 1.54906 * 104.92811 * 335.81704 * 19 5 4 21 21 H 1.08995 * 111.00671 * 278.99251 * 20 19 5 22 22 N 1.46501 * 111.00157 * 155.13776 * 20 19 5 23 23 C 1.36936 * 119.99861 * 86.45663 * 22 20 19 24 24 H 1.08000 * 119.99923 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99491 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00423 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99318 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47166 * 90.00350 * 27 25 23 29 29 H 1.48507 * 109.47027 * 210.00098 * 27 25 23 30 30 H 1.48492 * 109.47512 * 329.99900 * 27 25 23 31 31 H 1.08990 * 109.47380 * 298.31027 * 1 2 3 32 32 H 1.08996 * 109.46960 * 58.31358 * 1 2 3 33 33 H 1.09000 * 109.46437 * 178.31251 * 1 2 3 34 34 H 1.08999 * 109.88085 * 21.31677 * 4 2 1 35 35 H 1.09001 * 110.00954 * 260.22222 * 4 2 1 36 36 H 1.07993 * 125.98589 * 0.02562 * 9 8 6 37 37 H 1.08997 * 109.47125 * 65.02560 * 12 11 10 38 38 H 1.09003 * 109.46924 * 185.01897 * 12 11 10 39 39 H 1.09003 * 110.01477 * 53.61038 * 13 12 11 40 40 H 1.09000 * 110.48548 * 335.77896 * 14 13 12 41 41 H 1.08996 * 110.48523 * 98.42352 * 14 13 12 42 42 H 1.09006 * 110.75011 * 279.62622 * 15 14 13 43 43 H 1.08996 * 110.91208 * 156.33233 * 15 14 13 44 44 H 1.09000 * 110.48897 * 203.37785 * 16 15 14 45 45 H 1.09000 * 110.48766 * 80.73680 * 16 15 14 46 46 H 1.08995 * 110.03320 * 238.57024 * 17 13 12 47 47 H 1.09000 * 110.03214 * 0.02562 * 17 13 12 48 48 H 1.07994 * 126.28808 * 179.97438 * 18 11 10 49 49 H 1.08996 * 110.36539 * 94.70987 * 19 5 4 50 50 H 1.08993 * 110.36520 * 216.92217 * 19 5 4 51 51 H 0.97004 * 119.99935 * 266.44806 * 22 20 19 52 52 H 0.97002 * 119.99935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2472 -1.5460 0.7426 6 6 3.9952 -2.3774 1.4948 7 8 4.8885 -3.0235 0.9817 8 6 3.7304 -2.5036 2.9396 9 6 2.6681 -1.9043 3.6531 10 7 2.7743 -2.2552 4.9050 11 7 3.8980 -3.0762 5.0519 12 6 4.3639 -3.6732 6.3060 13 6 4.5654 -2.5734 7.3504 14 6 5.7479 -1.6696 6.9447 15 6 6.4402 -1.3246 8.2867 16 6 6.3280 -2.6502 9.0798 17 6 4.9341 -3.1969 8.7079 18 6 4.4772 -3.2243 3.8497 19 6 3.4675 -1.2454 -0.6838 20 6 2.0836 -0.7958 -1.2152 21 1 1.4528 -1.6560 -1.4391 22 7 2.2275 0.0673 -2.3901 23 6 2.3288 -0.4866 -3.6384 24 1 2.3030 -1.5598 -3.7566 25 6 2.4646 0.3313 -4.7517 26 7 2.4965 1.6391 -4.6075 27 14 2.6035 -0.4245 -6.4543 28 1 1.2475 -0.5769 -7.0404 29 1 3.4216 0.4595 -7.3230 30 1 3.2517 -1.7566 -6.3533 31 1 -0.3633 0.4873 0.9046 32 1 -0.3633 0.5398 -0.8744 33 1 -0.3632 -1.0273 -0.0303 34 1 1.3140 -1.4754 1.5781 35 1 2.3707 -0.1011 2.0010 36 1 1.9013 -1.2692 3.2348 37 1 3.6220 -4.3855 6.6669 38 1 5.3088 -4.1885 6.1340 39 1 3.6565 -1.9794 7.4468 40 1 6.4327 -2.2084 6.2897 41 1 5.3863 -0.7638 6.4580 42 1 5.9104 -0.5217 8.7993 43 1 7.4847 -1.0565 8.1280 44 1 6.3897 -2.4601 10.1513 45 1 7.1063 -3.3474 8.7697 46 1 4.2048 -2.9047 9.4634 47 1 4.9699 -4.2829 8.6226 48 1 5.3646 -3.8009 3.6345 49 1 4.1955 -0.4417 -0.7940 50 1 3.8051 -2.1372 -1.2116 51 1 2.2508 1.0312 -2.2839 52 1 2.5917 2.2106 -5.3855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939417965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:37 Heat of formation + Delta-G solvation = 26.892862 kcal Electronic energy + Delta-G solvation = -30240.219021 eV Core-core repulsion = 26240.257065 eV Total energy + Delta-G solvation = -3999.961956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.47084 -40.78086 -39.24052 -38.72594 -35.96685 -34.57284 -33.72359 -32.47775 -31.47764 -30.74458 -29.60702 -29.00759 -27.39616 -26.34610 -25.67531 -23.94266 -22.30003 -22.25118 -21.55569 -21.21352 -20.71583 -20.26195 -19.18639 -18.43428 -17.53918 -17.25041 -16.60638 -16.58494 -16.30218 -16.08361 -15.95721 -15.39891 -15.37120 -15.05965 -14.62843 -14.50251 -14.35288 -14.22039 -14.19392 -13.84188 -13.80037 -13.37453 -13.08991 -12.99378 -12.85736 -12.82509 -12.29316 -12.23842 -12.18439 -12.03915 -12.03188 -11.96877 -11.93866 -11.93372 -11.67492 -11.57619 -11.33328 -11.30845 -10.98357 -10.88006 -10.53230 -9.84031 -9.50423 -9.03729 -7.95663 -5.24818 0.52400 1.17056 1.38513 1.48032 1.49027 1.57437 2.05312 2.42832 2.56518 3.32097 3.37603 3.57356 3.58438 3.64169 3.67178 3.84317 3.87395 3.93691 4.10358 4.17939 4.22745 4.29254 4.34535 4.36525 4.43719 4.48285 4.51678 4.56641 4.61973 4.65135 4.71894 4.74409 4.81256 4.84520 4.93301 4.95652 4.97970 5.05829 5.12598 5.17749 5.22857 5.25035 5.29281 5.38655 5.41259 5.45412 5.46796 5.51252 5.57599 5.88242 6.26156 6.52490 6.62996 7.20635 7.33649 8.05400 8.30177 9.26902 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.001923 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.947980 B =14553.586674 C =14877.929962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.081 0.919 4 C 0.106 3.894 5 N -0.610 5.610 6 C 0.600 3.400 7 O -0.601 6.601 8 C -0.310 4.310 9 C 0.072 3.928 10 N -0.310 5.310 11 N -0.348 5.348 12 C 0.127 3.873 13 C -0.099 4.099 14 C -0.120 4.120 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.113 4.113 18 C 0.133 3.867 19 C 0.095 3.905 20 C 0.172 3.828 21 H 0.060 0.940 22 N -0.719 5.719 23 C -0.244 4.244 24 H 0.072 0.928 25 C -0.068 4.068 26 N -0.964 5.964 27 Si 0.968 3.032 28 H -0.284 1.284 29 H -0.296 1.296 30 H -0.275 1.275 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.216 0.784 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.202 0.798 49 H 0.047 0.953 50 H 0.044 0.956 51 H 0.378 0.622 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -9.423 32.083 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.016 4.016 5 N -0.342 5.342 6 C 0.392 3.608 7 O -0.484 6.484 8 C -0.325 4.325 9 C -0.114 4.114 10 N -0.130 5.130 11 N -0.126 5.126 12 C 0.008 3.992 13 C -0.118 4.118 14 C -0.158 4.158 15 C -0.164 4.164 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.020 4.020 19 C -0.032 4.032 20 C 0.061 3.939 21 H 0.078 0.922 22 N -0.358 5.358 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.261 4.261 26 N -0.614 5.614 27 Si 0.798 3.202 28 H -0.211 1.211 29 H -0.222 1.222 30 H -0.200 1.200 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.211 0.789 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.090 -9.892 33.050 34.561 hybrid contribution 0.754 0.298 -2.477 2.607 sum 2.843 -9.593 30.572 32.168 Atomic orbital electron populations 1.21642 0.92090 1.02440 1.02510 1.22469 0.97787 0.99182 0.92875 0.90094 1.22583 0.86975 0.94991 0.97033 1.48225 1.30540 1.44456 1.10933 1.17400 0.80133 0.77645 0.85625 1.90719 1.34963 1.47856 1.74907 1.20059 1.04803 1.14457 0.93161 1.24976 0.98201 0.98235 0.90016 1.77115 1.04622 1.11941 1.19279 1.48821 1.19501 1.36596 1.07689 1.22461 1.02082 0.95448 0.79203 1.22028 0.99134 0.95900 0.94732 1.22403 0.96714 0.98766 0.97878 1.22500 1.00435 0.98194 0.95264 1.22373 0.97055 0.96342 1.00242 1.22131 0.97306 1.01158 0.94498 1.23195 0.97987 0.96439 0.84397 1.22950 1.00946 0.98907 0.80352 1.21569 0.91988 0.93573 0.86740 0.92211 1.42357 1.86962 1.05133 1.01361 1.19566 1.40965 0.91995 0.85069 0.90979 1.25483 1.03394 0.95833 1.01379 1.69792 1.58667 1.03140 1.29765 0.85221 0.77400 0.77353 0.80263 1.21119 1.22219 1.19975 0.89656 0.93742 0.92005 0.88582 0.88860 0.76828 0.87847 0.85792 0.91058 0.91510 0.93878 0.91871 0.91379 0.90893 0.90813 0.91012 0.89708 0.78082 0.93480 0.93721 0.78906 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.14 71.98 0.66 -2.47 16 2 C -0.10 -2.96 3.17 -9.50 -0.03 -2.99 16 3 H 0.08 2.43 8.01 -2.39 -0.02 2.41 16 4 C 0.11 2.53 4.59 86.73 0.40 2.93 16 5 N -0.61 -19.88 3.33 -815.68 -2.71 -22.59 16 6 C 0.60 20.40 7.84 86.66 0.68 21.08 16 7 O -0.60 -25.17 17.13 -4.02 -0.07 -25.24 16 8 C -0.31 -7.99 6.09 -20.15 -0.12 -8.11 16 9 C 0.07 1.55 10.45 85.65 0.89 2.45 16 10 N -0.31 -6.55 12.23 -56.27 -0.69 -7.24 16 11 N -0.35 -6.04 3.47 -346.30 -1.20 -7.24 16 12 C 0.13 1.22 5.54 86.38 0.48 1.70 16 13 C -0.10 -1.02 3.03 -10.07 -0.03 -1.05 16 14 C -0.12 -1.51 6.19 31.67 0.20 -1.32 16 15 C -0.13 -1.29 6.91 31.88 0.22 -1.06 16 16 C -0.12 -0.84 6.83 31.67 0.22 -0.63 16 17 C -0.11 -0.72 6.46 31.32 0.20 -0.52 16 18 C 0.13 2.73 11.25 84.28 0.95 3.68 16 19 C 0.09 3.78 6.62 86.85 0.57 4.35 16 20 C 0.17 6.69 3.15 46.48 0.15 6.84 16 21 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 22 N -0.72 -35.38 5.28 -315.90 -1.67 -37.05 16 23 C -0.24 -13.49 9.98 84.03 0.84 -12.65 16 24 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 26 N -0.96 -58.17 13.06 21.65 0.28 -57.89 16 27 Si 0.97 46.45 29.55 68.60 2.03 48.47 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.83 6.67 -2.39 -0.02 1.81 16 35 H 0.09 1.80 6.85 -2.39 -0.02 1.78 16 36 H 0.22 3.54 4.51 -2.91 -0.01 3.53 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.60 7.92 -2.39 -0.02 0.58 16 39 H 0.07 1.03 8.03 -2.39 -0.02 1.01 16 40 H 0.07 0.82 7.76 -2.39 -0.02 0.80 16 41 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.08 0.28 7.67 -2.39 -0.02 0.26 16 48 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.04 1.98 7.99 -2.39 -0.02 1.97 16 51 H 0.38 19.73 7.72 -92.71 -0.72 19.02 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -74.14 413.02 2.90 -71.24 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.20 Total: 28.73 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.74 Total: 8.80 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.99 Total: -132.01 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.24 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.14 2.90 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939417965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.133 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds