Wall clock time and date at job start Wed Apr 1 2020 05:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.92180 * 2 1 4 4 C 1.54912 * 111.00332 * 236.09989 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64645 * 203.86243 * 5 4 2 7 7 O 1.21600 * 120.00216 * 0.02562 * 6 5 4 8 8 C 1.47434 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.41290 * 126.41610 * 0.02788 * 8 6 5 10 10 N 1.30446 * 108.02741 * 179.97438 * 9 8 6 11 11 N 1.39937 * 108.89047 * 359.97438 * 10 9 8 12 12 C 1.46504 * 125.74825 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47269 * 214.97713 * 12 11 10 14 14 C 1.52999 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47366 * 59.99978 * 14 13 12 16 16 C 1.53004 * 109.47016 * 300.00090 * 15 14 13 17 17 C 1.52999 * 109.47342 * 60.00088 * 16 15 14 18 18 C 1.34257 * 108.49645 * 359.75489 * 11 10 9 19 19 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 20 20 C 1.54327 * 107.26774 * 358.94057 * 19 5 4 21 21 H 1.08996 * 110.72159 * 96.17410 * 20 19 5 22 22 N 1.46498 * 110.71986 * 219.44234 * 20 19 5 23 23 C 1.36938 * 120.00187 * 268.52532 * 22 20 19 24 24 H 1.07999 * 119.99658 * 0.02562 * 23 22 20 25 25 C 1.38816 * 120.00241 * 179.97438 * 23 22 20 26 26 N 1.31609 * 119.99983 * 179.97438 * 25 23 22 27 27 Si 1.86806 * 119.99863 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.46819 * 89.99528 * 27 25 23 29 29 H 1.48496 * 109.47021 * 209.99702 * 27 25 23 30 30 H 1.48502 * 109.47071 * 329.99857 * 27 25 23 31 31 H 1.09002 * 109.46921 * 182.44378 * 1 2 3 32 32 H 1.09003 * 109.47131 * 302.44898 * 1 2 3 33 33 H 1.09001 * 109.47089 * 62.44456 * 1 2 3 34 34 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 35 35 H 1.08995 * 110.46379 * 323.80457 * 4 2 1 36 36 H 1.07999 * 125.98744 * 0.02562 * 9 8 6 37 37 H 1.08994 * 109.47604 * 334.98181 * 12 11 10 38 38 H 1.09005 * 109.46737 * 300.00785 * 13 12 11 39 39 H 1.08998 * 109.46844 * 60.00068 * 13 12 11 40 40 H 1.09004 * 109.46666 * 299.99782 * 14 13 12 41 41 H 1.08998 * 109.46527 * 180.02562 * 14 13 12 42 42 H 1.08997 * 109.46967 * 179.97438 * 15 14 13 43 43 H 1.08994 * 109.46910 * 59.99978 * 15 14 13 44 44 H 1.08998 * 109.46812 * 300.00034 * 16 15 14 45 45 H 1.08995 * 109.46832 * 179.97438 * 16 15 14 46 46 H 1.08991 * 109.47340 * 179.97438 * 17 16 15 47 47 H 1.09000 * 109.46894 * 59.99484 * 17 16 15 48 48 H 1.07998 * 126.29170 * 180.24244 * 18 11 10 49 49 H 1.08995 * 109.88316 * 118.35549 * 19 5 4 50 50 H 1.09002 * 109.88101 * 239.52444 * 19 5 4 51 51 H 0.97006 * 120.00026 * 88.51838 * 22 20 19 52 52 H 0.97004 * 120.00238 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4462 -1.5658 -1.5942 7 8 4.2977 -1.5081 -2.7997 8 6 5.7415 -1.9877 -1.0304 9 6 6.0622 -2.1017 0.3409 10 7 7.3002 -2.5021 0.4340 11 7 7.8230 -2.6615 -0.8542 12 6 9.1835 -3.0979 -1.1779 13 6 9.6648 -2.3753 -2.4378 14 6 11.0854 -2.8315 -2.7761 15 6 11.0915 -4.3418 -3.0207 16 6 10.6103 -5.0644 -1.7608 17 6 9.1896 -4.6083 -1.4224 18 6 6.8660 -2.3519 -1.7435 19 6 3.4674 -1.2742 0.6959 20 6 2.0861 -0.8080 1.2021 21 1 1.4468 -1.6632 1.4209 22 7 2.2286 0.0494 2.3814 23 6 2.2000 -0.5004 3.6353 24 1 2.0727 -1.5662 3.7547 25 6 2.3355 0.3119 4.7527 26 7 2.3074 -0.2165 5.9577 27 14 2.5563 2.1554 4.5461 28 1 1.2259 2.8150 4.5351 29 1 3.3631 2.6867 5.6738 30 1 3.2553 2.4296 3.2649 31 1 -0.3633 -1.0268 0.0438 32 1 -0.3633 0.5514 0.8672 33 1 -0.3633 0.4754 -0.9111 34 1 2.1560 -0.1719 -2.0837 35 1 1.4524 -1.6703 -1.4045 36 1 5.3984 -1.8946 1.1672 37 1 9.8483 -2.8614 -0.3471 38 1 8.9999 -2.6118 -3.2686 39 1 9.6600 -1.2993 -2.2637 40 1 11.7504 -2.5952 -1.9453 41 1 11.4283 -2.3164 -3.6734 42 1 12.1036 -4.6667 -3.2621 43 1 10.4266 -4.5780 -3.8513 44 1 11.2753 -4.8281 -0.9301 45 1 10.6142 -6.1403 -1.9352 46 1 8.8466 -5.1233 -0.5252 47 1 8.5247 -4.8445 -2.2532 48 1 6.9597 -2.3797 -2.8191 49 1 3.6650 -2.2894 1.0399 50 1 4.2426 -0.5998 1.0598 51 1 2.3434 1.0067 2.2741 52 1 2.4018 0.3512 6.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939481076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:33 Heat of formation + Delta-G solvation = 28.219758 kcal Electronic energy + Delta-G solvation = -30786.797397 eV Core-core repulsion = 26786.892979 eV Total energy + Delta-G solvation = -3999.904417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.62829 -40.88329 -39.32658 -38.77128 -35.93402 -34.46199 -33.72556 -32.86670 -31.92138 -31.33371 -30.05066 -29.49328 -27.47689 -25.76431 -24.57321 -23.86228 -23.51546 -22.26942 -21.82412 -21.49336 -20.77468 -20.30969 -19.49169 -18.54754 -17.48370 -17.26154 -16.65229 -16.50966 -16.23430 -15.96884 -15.67780 -15.56571 -15.10054 -14.99861 -14.93533 -14.80213 -14.54723 -14.28963 -13.98523 -13.82834 -13.70065 -13.51720 -13.39418 -13.26173 -13.01709 -12.93555 -12.89293 -12.48860 -12.21738 -12.17950 -12.11333 -12.07967 -11.88957 -11.77845 -11.58116 -11.45097 -11.40324 -11.30203 -11.01344 -10.88731 -10.59369 -9.88637 -9.53101 -9.33160 -7.98974 -5.33577 0.46648 1.07899 1.28080 1.41734 1.43387 1.50248 2.02616 2.38324 2.50978 3.23590 3.30764 3.44252 3.59130 3.64985 3.65108 3.77111 3.85047 3.86312 3.99202 4.04885 4.14481 4.15868 4.24021 4.33031 4.34869 4.38724 4.42505 4.44718 4.55978 4.57586 4.62202 4.74892 4.83496 4.88865 4.91505 4.94962 4.98581 5.08766 5.11135 5.12680 5.13618 5.24381 5.27304 5.30103 5.32743 5.38900 5.46642 5.52336 5.81429 5.84956 6.24522 6.46552 6.52539 7.09287 7.16934 7.83907 8.02536 9.21931 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.002605 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.875525 B =10746.050678 C =12173.791300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.081 0.919 4 C 0.118 3.882 5 N -0.610 5.610 6 C 0.608 3.392 7 O -0.588 6.588 8 C -0.312 4.312 9 C 0.067 3.933 10 N -0.323 5.323 11 N -0.348 5.348 12 C 0.152 3.848 13 C -0.128 4.128 14 C -0.110 4.110 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.126 4.126 18 C 0.138 3.862 19 C 0.080 3.920 20 C 0.174 3.826 21 H 0.075 0.925 22 N -0.736 5.736 23 C -0.226 4.226 24 H 0.065 0.935 25 C -0.058 4.058 26 N -0.981 5.981 27 Si 0.947 3.053 28 H -0.278 1.278 29 H -0.302 1.302 30 H -0.253 1.253 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.198 0.802 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.208 0.792 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.367 0.633 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.106 -6.152 -22.306 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 H 0.099 0.901 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.399 3.601 7 O -0.471 6.471 8 C -0.327 4.327 9 C -0.119 4.119 10 N -0.142 5.142 11 N -0.126 5.126 12 C 0.052 3.948 13 C -0.166 4.166 14 C -0.148 4.148 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.164 4.164 18 C -0.015 4.015 19 C -0.046 4.046 20 C 0.064 3.936 21 H 0.093 0.907 22 N -0.378 5.378 23 C -0.357 4.357 24 H 0.083 0.917 25 C -0.249 4.249 26 N -0.631 5.631 27 Si 0.775 3.225 28 H -0.205 1.205 29 H -0.229 1.229 30 H -0.177 1.177 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.214 0.786 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.225 0.775 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.201 0.799 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.166 -6.656 -21.989 28.092 hybrid contribution -0.675 1.263 0.478 1.509 sum 15.491 -5.393 -21.512 27.052 Atomic orbital electron populations 1.21595 0.92120 1.02691 1.02359 1.22610 0.97697 0.99083 0.93189 0.90100 1.22321 0.81962 0.98687 0.97416 1.48224 1.12591 1.66097 1.07213 1.17057 0.82360 0.75941 0.84710 1.90697 1.83909 1.57484 1.14979 1.20209 0.96670 1.22341 0.93474 1.24919 0.93468 0.96195 0.97358 1.77209 1.11762 1.24223 1.01054 1.49107 1.11692 1.48612 1.03171 1.21807 0.76887 0.95954 1.00131 1.21987 0.99289 1.00016 0.95313 1.21493 0.93992 0.96490 1.02863 1.21608 1.02427 0.94455 0.97436 1.21503 0.93719 1.00924 0.98823 1.21957 0.99860 0.92478 1.02133 1.23122 0.86829 0.93561 0.97966 1.23210 1.01521 1.01162 0.78670 1.21439 0.92594 0.93834 0.85763 0.90715 1.42645 1.88040 1.05623 1.01452 1.19020 1.40212 0.93452 0.83031 0.91742 1.25398 1.02714 1.02041 0.94782 1.69864 1.59186 1.36140 0.97921 0.85539 0.77962 0.81547 0.77486 1.20450 1.22913 1.17737 0.91862 0.92926 0.90565 0.90229 0.90146 0.78615 0.87942 0.89930 0.91217 0.91162 0.89684 0.90173 0.91347 0.91202 0.90350 0.92503 0.90991 0.77518 0.91373 0.91519 0.79904 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.30 71.98 0.67 -2.40 16 2 C -0.11 -2.90 3.27 -9.40 -0.03 -2.93 16 3 H 0.08 2.26 8.01 -2.39 -0.02 2.24 16 4 C 0.12 3.16 6.37 86.86 0.55 3.71 16 5 N -0.61 -18.82 3.33 -815.64 -2.71 -21.53 16 6 C 0.61 20.01 7.85 86.67 0.68 20.69 16 7 O -0.59 -21.51 17.16 -4.03 -0.07 -21.58 16 8 C -0.31 -9.39 6.09 -20.15 -0.12 -9.51 16 9 C 0.07 2.11 10.45 85.65 0.89 3.00 16 10 N -0.32 -9.92 12.50 -56.28 -0.70 -10.63 16 11 N -0.35 -8.27 3.49 -325.73 -1.14 -9.41 16 12 C 0.15 2.45 3.18 44.99 0.14 2.60 16 13 C -0.13 -1.43 4.84 30.60 0.15 -1.29 16 14 C -0.11 -0.81 5.92 30.59 0.18 -0.63 16 15 C -0.12 -0.81 5.92 30.60 0.18 -0.63 16 16 C -0.11 -1.00 5.92 30.60 0.18 -0.82 16 17 C -0.13 -1.74 5.53 30.60 0.17 -1.57 16 18 C 0.14 3.36 10.39 84.28 0.88 4.24 16 19 C 0.08 2.60 4.73 86.73 0.41 3.01 16 20 C 0.17 5.94 3.08 46.18 0.14 6.08 16 21 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 22 N -0.74 -31.35 4.95 -317.33 -1.57 -32.92 16 23 C -0.23 -12.01 10.44 84.03 0.88 -11.14 16 24 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 25 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 26 N -0.98 -61.17 13.97 21.65 0.30 -60.87 16 27 Si 0.95 44.08 27.74 68.60 1.90 45.98 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 30 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 31 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 35 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 36 H 0.20 6.27 4.47 -2.91 -0.01 6.26 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 0.82 7.13 -2.38 -0.02 0.81 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 48 H 0.21 3.83 7.24 -2.91 -0.02 3.81 16 49 H 0.07 2.21 7.01 -2.39 -0.02 2.19 16 50 H 0.07 2.32 6.71 -2.39 -0.02 2.31 16 51 H 0.37 15.28 5.62 -92.70 -0.52 14.76 16 52 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.90 405.07 2.76 -68.14 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.33 Total: 33.19 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.42 Total: 9.63 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -5.82 Total: -135.36 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.07 Total: -21.58 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Total: -70.90 2.76 -68.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939481076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.355 kcal (2) G-P(sol) polarization free energy of solvation -70.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds