Wall clock time and date at job start Wed Apr 1 2020 04:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.49926 * 2 1 4 4 C 1.53183 * 109.50192 * 239.92916 * 2 1 3 5 5 N 1.46927 * 108.78012 * 185.41373 * 4 2 1 6 6 C 1.36933 * 120.63353 * 233.59018 * 5 4 2 7 7 H 1.08000 * 120.00191 * 151.84471 * 6 5 4 8 8 C 1.38816 * 120.00216 * 331.84389 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07025 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07047 * 8 6 5 11 11 H 1.48493 * 109.47484 * 90.00085 * 10 8 6 12 12 H 1.48503 * 109.47169 * 210.00310 * 10 8 6 13 13 H 1.48506 * 109.47138 * 329.99723 * 10 8 6 14 14 C 1.46927 * 118.73625 * 53.60636 * 5 4 2 15 15 C 1.53188 * 108.89428 * 306.32307 * 14 5 4 16 16 C 1.53047 * 109.49767 * 120.09081 * 2 1 3 17 17 H 1.08999 * 109.45547 * 61.30869 * 16 2 1 18 18 N 1.46506 * 109.45834 * 301.34096 * 16 2 1 19 19 C 1.34777 * 119.99544 * 154.99770 * 18 16 2 20 20 O 1.21274 * 120.00492 * 359.97438 * 19 18 16 21 21 C 1.50705 * 119.99444 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46771 * 180.02562 * 21 19 18 23 23 N 1.31068 * 125.96311 * 90.02524 * 22 21 19 24 24 N 1.40292 * 108.26994 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.09366 * 179.97438 * 24 23 22 26 26 C 1.34332 * 107.81556 * 359.94753 * 24 23 22 27 27 C 1.35747 * 107.84446 * 359.81390 * 26 24 23 28 28 C 1.50836 * 124.11292 * 180.08781 * 27 26 24 29 29 C 1.53364 * 108.37550 * 343.66934 * 28 27 26 30 30 C 1.53115 * 109.50580 * 49.95384 * 29 28 27 31 31 C 1.50822 * 128.02849 * 180.17240 * 26 24 23 32 32 H 1.09003 * 109.46885 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47609 * 300.06699 * 1 2 3 34 34 H 1.08998 * 109.47168 * 60.07209 * 1 2 3 35 35 H 1.08997 * 109.58943 * 65.62490 * 4 2 1 36 36 H 1.08997 * 109.59011 * 305.20089 * 4 2 1 37 37 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 38 38 H 1.09007 * 109.58506 * 66.18326 * 14 5 4 39 39 H 1.09000 * 109.58539 * 186.46214 * 14 5 4 40 40 H 1.08999 * 109.49809 * 174.65694 * 15 14 5 41 41 H 1.08993 * 109.50069 * 294.75424 * 15 14 5 42 42 H 0.97000 * 120.00111 * 335.00017 * 18 16 2 43 43 H 1.09004 * 109.46769 * 299.99886 * 21 19 18 44 44 H 1.08997 * 109.47499 * 59.99896 * 21 19 18 45 45 H 1.08995 * 109.68377 * 103.38886 * 28 27 26 46 46 H 1.08998 * 109.68314 * 223.94830 * 28 27 26 47 47 H 1.08996 * 109.46568 * 169.96679 * 29 28 27 48 48 H 1.09005 * 109.46429 * 289.95343 * 29 28 27 49 49 H 1.09006 * 109.45745 * 49.72512 * 30 29 28 50 50 H 1.08997 * 109.46236 * 169.70970 * 30 29 28 51 51 H 1.09001 * 109.68044 * 283.13645 * 31 26 24 52 52 H 1.08991 * 109.68659 * 43.69310 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2496 5 7 3.5046 -0.8289 -1.1696 6 6 4.2936 -0.3788 -2.1943 7 1 5.2962 -0.0322 -1.9918 8 6 3.8048 -0.3681 -3.4935 9 7 2.7415 -1.0798 -3.8024 10 14 4.6560 0.6561 -4.8033 11 1 5.7025 -0.1610 -5.4683 12 1 3.6590 1.0989 -5.8110 13 1 5.2831 1.8451 -4.1720 14 6 4.1053 -1.4266 0.0307 15 6 3.5739 -0.6959 1.2677 16 6 2.0408 -0.7233 1.2483 17 1 1.6968 -1.7575 1.2349 18 7 1.5264 -0.0534 2.4454 19 6 1.3983 -0.7390 3.5986 20 8 1.7084 -1.9105 3.6454 21 6 0.8686 -0.0500 4.8299 22 6 0.8250 -1.0297 5.9742 23 7 1.7908 -1.2561 6.8308 24 7 1.3548 -2.2347 7.7366 25 1 1.8660 -2.5956 8.4778 26 6 0.1031 -2.5825 7.3950 27 6 -0.2512 -1.8479 6.3098 28 6 -1.5902 -1.9460 5.6224 29 6 -2.2715 -3.2438 6.0737 30 6 -2.2381 -3.3341 7.6018 31 6 -0.7960 -3.5921 8.0636 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5148 0.8893 34 1 -0.3633 0.5127 -0.8906 35 1 1.7638 -0.1576 -2.1388 36 1 1.6054 -1.7213 -1.2983 37 1 2.4002 -1.0726 -4.7103 38 1 3.8375 -2.4818 0.0864 39 1 5.1897 -1.3268 -0.0150 40 1 3.9385 -1.1913 2.1675 41 1 3.9190 0.3379 1.2559 42 1 1.2780 0.8835 2.4079 43 1 1.5222 0.7828 5.0897 44 1 -0.1360 0.3242 4.6330 45 1 -2.2082 -1.0918 5.8987 46 1 -1.4479 -1.9626 4.5419 47 1 -3.3065 -3.2486 5.7320 48 1 -1.7444 -4.0978 5.6480 49 1 -2.6002 -2.3988 8.0288 50 1 -2.8756 -4.1546 7.9312 51 1 -0.4860 -4.5998 7.7869 52 1 -0.7396 -3.4743 9.1456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942050153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:24 Heat of formation + Delta-G solvation = 32.684944 kcal Electronic energy + Delta-G solvation = -31070.934899 eV Core-core repulsion = 27071.224107 eV Total energy + Delta-G solvation = -3999.710792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.71654 -39.62657 -37.55870 -36.70452 -34.44396 -33.60749 -32.28185 -31.79803 -30.45632 -29.60770 -29.34838 -28.17209 -25.88850 -24.89485 -23.77863 -22.49642 -22.22826 -20.88027 -20.66677 -19.81574 -19.05019 -18.87854 -17.69174 -17.05594 -16.51300 -15.80781 -15.54408 -15.05725 -14.76024 -14.39896 -14.14195 -14.10815 -13.81356 -13.77374 -13.57609 -13.50190 -13.25829 -13.01334 -12.96517 -12.83877 -12.42059 -12.20935 -12.15294 -11.90713 -11.41667 -11.26386 -11.19930 -11.10804 -11.04766 -10.83579 -10.69928 -10.63629 -10.53881 -10.30730 -10.13412 -9.97110 -9.85603 -9.67154 -9.51205 -9.21036 -8.61575 -8.42198 -8.36851 -6.65183 -5.77568 -3.19421 1.74719 2.53801 2.67962 2.89186 3.38343 3.45445 3.47848 3.58850 4.27618 4.41516 4.51117 4.53492 4.57583 4.89285 4.94211 5.00604 5.09855 5.20366 5.28118 5.30146 5.34017 5.37091 5.39285 5.47123 5.49702 5.61844 5.63603 5.71591 5.73057 5.83242 5.93648 5.95080 6.08545 6.13068 6.16622 6.18443 6.30206 6.40554 6.51604 6.54649 6.56957 6.65093 6.73760 6.84077 7.02267 7.03950 7.17703 7.36677 7.59287 7.64374 7.79543 7.84008 8.46874 8.51116 9.23061 9.86290 10.43704 11.31275 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.002200 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.627321 B =12722.683485 C =13210.145473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.159 3.841 17 H 0.080 0.920 18 N -0.723 5.723 19 C 0.515 3.485 20 O -0.531 6.531 21 C -0.065 4.065 22 C 0.109 3.891 23 N -0.285 5.285 24 N -0.470 5.470 25 H 0.436 0.564 26 C 0.083 3.917 27 C -0.221 4.221 28 C -0.042 4.042 29 C -0.120 4.120 30 C -0.112 4.112 31 C -0.057 4.057 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.254 0.746 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.085 0.915 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 0.214 23.982 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.098 0.902 18 N -0.373 5.373 19 C 0.300 3.700 20 O -0.407 6.407 21 C -0.107 4.107 22 C -0.057 4.057 23 N -0.108 5.108 24 N -0.177 5.177 25 H 0.279 0.721 26 C -0.047 4.047 27 C -0.232 4.232 28 C -0.080 4.080 29 C -0.158 4.158 30 C -0.150 4.150 31 C -0.096 4.096 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.229 0.771 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.847 -0.354 24.177 26.502 hybrid contribution -0.046 0.535 -0.529 0.753 sum -10.893 0.181 23.649 26.038 Atomic orbital electron populations 1.21719 0.95900 1.01429 1.00573 1.22151 0.94685 1.00601 0.96834 0.91450 1.20798 0.83051 0.97057 0.93644 1.44093 1.01753 1.69401 1.16280 1.19173 0.97973 1.35168 0.85746 0.91722 1.25050 0.98557 0.99087 0.96995 1.70030 1.25677 1.40304 1.18724 0.86313 0.78663 0.80346 0.81555 1.21419 1.21572 1.20517 1.20874 0.96638 0.94272 0.86199 1.22431 0.94962 1.01240 0.99370 1.21087 0.93670 0.97112 0.82595 0.90153 1.46263 1.66313 1.14294 1.10465 1.20230 0.78420 0.87290 0.84095 1.90726 1.49239 1.16202 1.84515 1.20027 1.04162 0.96831 0.89634 1.21175 0.91526 0.97539 0.95473 1.77429 1.21492 1.07940 1.03923 1.45862 1.11779 1.33169 1.26874 0.72059 1.20854 0.87067 0.99152 0.97580 1.19665 0.98799 1.03946 1.00771 1.19980 0.91179 0.97399 0.99446 1.21603 1.00698 0.98341 0.95161 1.21583 0.94525 1.02291 0.96578 1.20400 0.93531 0.96373 0.99256 0.93057 0.93787 0.92687 0.89059 0.96187 0.93636 0.96284 0.92663 0.92712 0.92359 0.77122 0.87577 0.87177 0.91454 0.90987 0.91387 0.91551 0.91340 0.91069 0.89693 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 37.15 0.34 -1.76 16 2 C -0.12 -2.20 2.46 -90.50 -0.22 -2.42 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.18 4.24 4.59 -3.71 -0.02 4.22 16 5 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16 6 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 7 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 8 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 9 N -0.90 -26.09 11.20 55.49 0.62 -25.47 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 C 0.15 3.25 6.50 -3.71 -0.02 3.23 16 15 C -0.14 -2.64 5.68 -26.45 -0.15 -2.79 16 16 C 0.16 2.78 1.88 -67.72 -0.13 2.66 16 17 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 18 N -0.72 -10.01 4.37 -53.60 -0.23 -10.25 16 19 C 0.52 7.63 7.79 -10.98 -0.09 7.54 16 20 O -0.53 -10.31 15.70 5.56 0.09 -10.23 16 21 C -0.06 -0.72 6.13 -29.03 -0.18 -0.90 16 22 C 0.11 1.46 5.71 -82.52 -0.47 0.99 16 23 N -0.28 -4.05 12.71 33.60 0.43 -3.63 16 24 N -0.47 -5.17 7.34 33.48 0.25 -4.92 16 25 H 0.44 3.32 8.96 -182.45 -1.64 1.68 16 26 C 0.08 0.86 7.08 -82.33 -0.58 0.28 16 27 C -0.22 -2.61 5.91 -105.05 -0.62 -3.23 16 28 C -0.04 -0.40 6.05 -27.63 -0.17 -0.56 16 29 C -0.12 -0.94 5.89 -26.48 -0.16 -1.09 16 30 C -0.11 -0.69 5.92 -26.36 -0.16 -0.84 16 31 C -0.06 -0.38 6.30 -27.51 -0.17 -0.55 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 1.20 7.93 -51.93 -0.41 0.78 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.40 4.30 8.31 -40.82 -0.34 3.96 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.11 0.89 8.06 -51.93 -0.42 0.47 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 49 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -34.75 407.30 -11.49 -46.24 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -10.21 Total: 3.31 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.03 Total: -2.33 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.54 Total: -59.73 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.75 -11.49 -46.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.928 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds