Wall clock time and date at job start Wed Apr 1 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.49926 * 2 1 4 4 C 1.53183 * 109.50192 * 239.92916 * 2 1 3 5 5 N 1.46927 * 108.78012 * 185.41373 * 4 2 1 6 6 C 1.36933 * 120.63353 * 233.59018 * 5 4 2 7 7 H 1.08000 * 120.00191 * 151.84471 * 6 5 4 8 8 C 1.38816 * 120.00216 * 331.84389 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07025 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07047 * 8 6 5 11 11 H 1.48493 * 109.47484 * 90.00085 * 10 8 6 12 12 H 1.48503 * 109.47169 * 210.00310 * 10 8 6 13 13 H 1.48506 * 109.47138 * 329.99723 * 10 8 6 14 14 C 1.46927 * 118.73625 * 53.60636 * 5 4 2 15 15 C 1.53188 * 108.89428 * 306.32307 * 14 5 4 16 16 C 1.53047 * 109.49767 * 120.09081 * 2 1 3 17 17 H 1.08999 * 109.45547 * 61.30869 * 16 2 1 18 18 N 1.46506 * 109.45834 * 301.34096 * 16 2 1 19 19 C 1.34777 * 119.99544 * 154.99770 * 18 16 2 20 20 O 1.21274 * 120.00492 * 359.97438 * 19 18 16 21 21 C 1.50705 * 119.99444 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46771 * 180.02562 * 21 19 18 23 23 N 1.31068 * 125.96311 * 90.02524 * 22 21 19 24 24 N 1.40292 * 108.26994 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.09366 * 179.97438 * 24 23 22 26 26 C 1.34332 * 107.81556 * 359.94753 * 24 23 22 27 27 C 1.35747 * 107.84446 * 359.81390 * 26 24 23 28 28 C 1.50836 * 124.11292 * 180.08781 * 27 26 24 29 29 C 1.53364 * 108.37550 * 343.66934 * 28 27 26 30 30 C 1.53115 * 109.50580 * 49.95384 * 29 28 27 31 31 C 1.50822 * 128.02849 * 180.17240 * 26 24 23 32 32 H 1.09003 * 109.46885 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47609 * 300.06699 * 1 2 3 34 34 H 1.08998 * 109.47168 * 60.07209 * 1 2 3 35 35 H 1.08997 * 109.58943 * 65.62490 * 4 2 1 36 36 H 1.08997 * 109.59011 * 305.20089 * 4 2 1 37 37 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 38 38 H 1.09007 * 109.58506 * 66.18326 * 14 5 4 39 39 H 1.09000 * 109.58539 * 186.46214 * 14 5 4 40 40 H 1.08999 * 109.49809 * 174.65694 * 15 14 5 41 41 H 1.08993 * 109.50069 * 294.75424 * 15 14 5 42 42 H 0.97000 * 120.00111 * 335.00017 * 18 16 2 43 43 H 1.09004 * 109.46769 * 299.99886 * 21 19 18 44 44 H 1.08997 * 109.47499 * 59.99896 * 21 19 18 45 45 H 1.08995 * 109.68377 * 103.38886 * 28 27 26 46 46 H 1.08998 * 109.68314 * 223.94830 * 28 27 26 47 47 H 1.08996 * 109.46568 * 169.96679 * 29 28 27 48 48 H 1.09005 * 109.46429 * 289.95343 * 29 28 27 49 49 H 1.09006 * 109.45745 * 49.72512 * 30 29 28 50 50 H 1.08997 * 109.46236 * 169.70970 * 30 29 28 51 51 H 1.09001 * 109.68044 * 283.13645 * 31 26 24 52 52 H 1.08991 * 109.68659 * 43.69310 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2496 5 7 3.5046 -0.8289 -1.1696 6 6 4.2936 -0.3788 -2.1943 7 1 5.2962 -0.0322 -1.9918 8 6 3.8048 -0.3681 -3.4935 9 7 2.7415 -1.0798 -3.8024 10 14 4.6560 0.6561 -4.8033 11 1 5.7025 -0.1610 -5.4683 12 1 3.6590 1.0989 -5.8110 13 1 5.2831 1.8451 -4.1720 14 6 4.1053 -1.4266 0.0307 15 6 3.5739 -0.6959 1.2677 16 6 2.0408 -0.7233 1.2483 17 1 1.6968 -1.7575 1.2349 18 7 1.5264 -0.0534 2.4454 19 6 1.3983 -0.7390 3.5986 20 8 1.7084 -1.9105 3.6454 21 6 0.8686 -0.0500 4.8299 22 6 0.8250 -1.0297 5.9742 23 7 1.7908 -1.2561 6.8308 24 7 1.3548 -2.2347 7.7366 25 1 1.8660 -2.5956 8.4778 26 6 0.1031 -2.5825 7.3950 27 6 -0.2512 -1.8479 6.3098 28 6 -1.5902 -1.9460 5.6224 29 6 -2.2715 -3.2438 6.0737 30 6 -2.2381 -3.3341 7.6018 31 6 -0.7960 -3.5921 8.0636 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5148 0.8893 34 1 -0.3633 0.5127 -0.8906 35 1 1.7638 -0.1576 -2.1388 36 1 1.6054 -1.7213 -1.2983 37 1 2.4002 -1.0726 -4.7103 38 1 3.8375 -2.4818 0.0864 39 1 5.1897 -1.3268 -0.0150 40 1 3.9385 -1.1913 2.1675 41 1 3.9190 0.3379 1.2559 42 1 1.2780 0.8835 2.4079 43 1 1.5222 0.7828 5.0897 44 1 -0.1360 0.3242 4.6330 45 1 -2.2082 -1.0918 5.8987 46 1 -1.4479 -1.9626 4.5419 47 1 -3.3065 -3.2486 5.7320 48 1 -1.7444 -4.0978 5.6480 49 1 -2.6002 -2.3988 8.0288 50 1 -2.8756 -4.1546 7.9312 51 1 -0.4860 -4.5998 7.7869 52 1 -0.7396 -3.4743 9.1456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942050153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:22 Heat of formation + Delta-G solvation = 10.208541 kcal Electronic energy + Delta-G solvation = -31071.909549 eV Core-core repulsion = 27071.224107 eV Total energy + Delta-G solvation = -4000.685442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.53812 -40.95055 -39.13508 -37.33698 -36.11816 -34.51490 -33.90587 -33.47950 -31.56873 -30.76027 -30.26995 -29.19718 -27.53296 -26.68579 -24.41938 -24.09672 -22.96029 -22.50570 -21.90116 -21.16188 -20.34761 -19.63545 -18.83152 -18.45977 -17.89678 -17.23411 -16.70716 -16.32106 -16.10765 -15.57727 -15.48340 -15.23952 -14.93941 -14.80931 -14.68905 -14.64223 -14.45791 -14.29725 -14.22289 -13.91372 -13.66024 -13.50641 -13.16717 -12.93873 -12.92066 -12.82663 -12.80011 -12.53196 -12.45780 -12.02777 -11.83787 -11.74034 -11.72038 -11.70786 -11.53514 -11.43252 -11.34749 -11.24987 -10.91191 -10.56111 -10.22431 -9.93395 -9.17986 -8.70783 -7.88009 -5.34050 0.90892 1.47896 1.48871 1.59233 1.63365 1.72974 1.93251 2.43816 2.51550 3.27301 3.55360 3.62951 3.70632 3.78998 3.91797 4.00774 4.05066 4.08523 4.21146 4.23742 4.34440 4.35327 4.40173 4.57479 4.58189 4.66242 4.68795 4.71475 4.76296 4.81090 4.82120 4.87271 4.96095 5.00165 5.04766 5.08800 5.09814 5.20113 5.26947 5.30055 5.30647 5.37834 5.44087 5.51471 5.51688 5.60975 5.66133 5.73224 5.75256 6.38641 6.46847 6.68202 6.73609 7.14070 7.37415 7.83063 8.36694 9.18937 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.002200 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.627321 B =12722.683485 C =13210.145473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.076 0.924 4 C 0.187 3.813 5 N -0.609 5.609 6 C -0.265 4.265 7 H 0.066 0.934 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.269 1.269 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.172 3.828 17 H 0.052 0.948 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.581 6.581 21 C -0.056 4.056 22 C 0.090 3.910 23 N -0.328 5.328 24 N -0.468 5.468 25 H 0.447 0.553 26 C 0.085 3.915 27 C -0.245 4.245 28 C -0.041 4.041 29 C -0.121 4.121 30 C -0.107 4.107 31 C -0.056 4.056 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.063 0.937 36 H -0.010 1.010 37 H 0.251 0.749 38 H 0.002 0.998 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.415 0.585 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 1.862 26.016 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 H 0.094 0.906 4 C 0.061 3.939 5 N -0.333 5.333 6 C -0.395 4.395 7 H 0.084 0.916 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.797 3.203 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.194 1.194 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.067 3.933 17 H 0.070 0.930 18 N -0.359 5.359 19 C 0.304 3.696 20 O -0.460 6.460 21 C -0.097 4.097 22 C -0.076 4.076 23 N -0.152 5.152 24 N -0.176 5.176 25 H 0.293 0.707 26 C -0.045 4.045 27 C -0.257 4.257 28 C -0.079 4.079 29 C -0.159 4.159 30 C -0.145 4.145 31 C -0.095 4.095 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.008 0.992 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.144 0.856 44 H 0.163 0.837 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.108 0.892 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.250 1.336 26.248 28.997 hybrid contribution 0.427 -0.094 -1.117 1.199 sum -11.824 1.241 25.132 27.802 Atomic orbital electron populations 1.21675 0.93306 1.01458 1.02496 1.21879 0.96726 0.99878 0.94205 0.90606 1.20628 0.82333 0.95595 0.95314 1.44364 1.02407 1.69808 1.16672 1.19496 0.98387 1.34978 0.86637 0.91649 1.25828 0.99456 1.00199 0.98969 1.70192 1.27183 1.41710 1.18937 0.85258 0.77440 0.78898 0.78716 1.21406 1.21576 1.19376 1.20943 0.96758 0.93718 0.86763 1.22231 0.95937 1.01055 0.97311 1.20637 0.92690 0.95984 0.83980 0.92999 1.45952 1.65758 1.15088 1.09082 1.20866 0.77186 0.86662 0.84890 1.90713 1.51381 1.18653 1.85297 1.20093 1.06314 0.96430 0.86911 1.21577 0.91892 0.98268 0.95851 1.77324 1.22775 1.09746 1.05312 1.45919 1.12249 1.32620 1.26829 0.70741 1.21476 0.86898 0.98910 0.97200 1.20068 0.99617 1.04323 1.01644 1.20019 0.90654 0.99059 0.98162 1.21618 1.01039 0.96682 0.96547 1.21590 0.94349 1.03468 0.95104 1.20578 0.93070 0.95359 1.00467 0.94028 0.90058 0.92520 0.91820 0.99240 0.93971 0.97968 0.92631 0.92780 0.91381 0.74738 0.85583 0.83675 0.89696 0.92762 0.89902 0.93345 0.90754 0.88967 0.89244 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.02 71.98 0.65 -3.14 16 2 C -0.11 -3.78 2.46 -10.72 -0.03 -3.81 16 3 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.19 9.06 4.59 86.36 0.40 9.46 16 5 N -0.61 -31.56 2.99 -699.11 -2.09 -33.65 16 6 C -0.26 -14.81 9.58 84.04 0.81 -14.00 16 7 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 8 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 9 N -0.93 -55.54 11.20 21.65 0.24 -55.29 16 10 Si 0.97 44.89 29.59 68.60 2.03 46.91 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 14 C 0.14 6.57 6.50 86.36 0.56 7.13 16 15 C -0.13 -4.72 5.68 30.77 0.17 -4.55 16 16 C 0.17 5.98 1.88 45.12 0.08 6.07 16 17 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 18 N -0.71 -18.24 4.37 -441.89 -1.93 -20.17 16 19 C 0.52 14.70 7.79 87.66 0.68 15.38 16 20 O -0.58 -22.81 15.70 -3.01 -0.05 -22.86 16 21 C -0.06 -1.13 6.13 29.10 0.18 -0.96 16 22 C 0.09 2.30 5.71 42.93 0.24 2.55 16 23 N -0.33 -9.19 12.71 -47.62 -0.61 -9.79 16 24 N -0.47 -9.95 7.34 -47.99 -0.35 -10.30 16 25 H 0.45 6.50 8.96 -213.19 -1.91 4.59 16 26 C 0.09 1.66 7.08 41.64 0.29 1.96 16 27 C -0.25 -5.53 5.91 -20.14 -0.12 -5.65 16 28 C -0.04 -0.71 6.05 30.01 0.18 -0.53 16 29 C -0.12 -1.68 5.89 30.75 0.18 -1.49 16 30 C -0.11 -1.01 5.92 30.84 0.18 -0.83 16 31 C -0.06 -0.62 6.30 30.09 0.19 -0.43 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.74 7.36 -2.39 -0.02 1.73 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 3.43 6.06 -2.39 -0.01 3.41 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.42 7.58 8.31 -92.71 -0.77 6.81 16 43 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.15 1.85 8.06 -2.39 -0.02 1.83 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 0.83 8.11 -2.38 -0.02 0.81 16 49 H 0.07 0.65 8.11 -2.38 -0.02 0.63 16 50 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -79.02 407.30 0.57 -78.45 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -1.75 Total: 21.87 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.08 Total: 4.82 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -4.74 Total: -129.20 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -79.02 0.57 -78.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.662 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds