Wall clock time and date at job start Wed Apr 1 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.51968 * 2 1 4 4 C 1.53186 * 109.49830 * 239.91730 * 2 1 3 5 5 N 1.46931 * 108.77430 * 185.41219 * 4 2 1 6 6 C 1.36931 * 120.63109 * 233.63400 * 5 4 2 7 7 H 1.07998 * 120.00188 * 31.42249 * 6 5 4 8 8 C 1.38819 * 119.99858 * 211.42745 * 6 5 4 9 9 N 1.31612 * 119.99870 * 10.65825 * 8 6 5 10 10 Si 1.86797 * 119.99889 * 190.65577 * 8 6 5 11 11 H 1.48496 * 109.47184 * 60.00171 * 10 8 6 12 12 H 1.48500 * 109.46969 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47376 * 300.00010 * 10 8 6 14 14 C 1.46926 * 118.73672 * 53.60827 * 5 4 2 15 15 C 1.53191 * 108.77673 * 306.39200 * 14 5 4 16 16 C 1.53038 * 109.49583 * 120.07858 * 2 1 3 17 17 H 1.09005 * 109.45178 * 301.33235 * 16 2 1 18 18 N 1.46500 * 109.46200 * 61.29600 * 16 2 1 19 19 C 1.34770 * 120.00325 * 205.06633 * 18 16 2 20 20 O 1.21627 * 119.99992 * 4.68423 * 19 18 16 21 21 C 1.47169 * 120.00069 * 184.68680 * 19 18 16 22 22 C 1.38401 * 126.88729 * 91.46032 * 21 19 18 23 23 C 1.50703 * 127.31675 * 359.73753 * 22 21 19 24 24 C 1.53783 * 113.61218 * 219.13754 * 23 22 21 25 25 C 1.53953 * 87.01934 * 220.04729 * 24 23 22 26 26 C 1.53775 * 87.11024 * 25.36509 * 25 24 23 27 27 C 1.39670 * 105.36190 * 180.02562 * 22 21 19 28 28 N 1.30863 * 107.85938 * 359.97438 * 27 22 21 29 29 N 1.28441 * 110.93053 * 0.02562 * 28 27 22 30 30 C 1.46504 * 125.19202 * 180.02562 * 29 28 27 31 31 H 1.08998 * 109.46964 * 299.91830 * 1 2 3 32 32 H 1.09002 * 109.46669 * 59.92051 * 1 2 3 33 33 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58546 * 65.62829 * 4 2 1 35 35 H 1.08997 * 109.58960 * 305.19999 * 4 2 1 36 36 H 0.97003 * 120.00041 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.58306 * 186.60313 * 14 5 4 38 38 H 1.09005 * 109.58543 * 66.17887 * 14 5 4 39 39 H 1.08998 * 109.49542 * 294.68173 * 15 14 5 40 40 H 1.09007 * 109.49632 * 174.58481 * 15 14 5 41 41 H 0.97002 * 119.99599 * 25.06899 * 18 16 2 42 42 H 1.09001 * 112.85224 * 350.32718 * 23 22 21 43 43 H 1.09003 * 113.61666 * 334.57085 * 24 23 22 44 44 H 1.09007 * 113.61386 * 105.46756 * 24 23 22 45 45 H 1.08996 * 113.53906 * 270.81107 * 25 24 23 46 46 H 1.09003 * 113.66381 * 139.93027 * 25 24 23 47 47 H 1.09009 * 113.61254 * 220.09142 * 26 25 24 48 48 H 1.08999 * 113.61974 * 89.18647 * 26 25 24 49 49 H 1.07995 * 126.07153 * 179.97438 * 27 22 21 50 50 H 1.09002 * 109.47093 * 274.84409 * 30 29 28 51 51 H 1.08998 * 109.47174 * 34.84412 * 30 29 28 52 52 H 1.08996 * 109.46811 * 154.84379 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2937 -0.3784 -2.1939 7 1 3.9736 0.4613 -2.7928 8 6 5.5050 -1.0010 -2.4626 9 7 5.8010 -2.1436 -1.8803 10 14 6.7147 -0.2171 -3.6507 11 1 7.1048 1.1242 -3.1468 12 1 7.9222 -1.0740 -3.7648 13 1 6.0786 -0.0787 -4.9854 14 6 4.1054 -1.4266 0.0309 15 6 3.5709 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2484 17 1 1.6581 -0.2242 2.1388 18 7 1.5784 -2.1130 1.2309 19 6 1.4489 -2.7947 2.3862 20 8 1.6336 -2.2318 3.4485 21 6 1.0842 -4.2203 2.3626 22 6 1.9507 -5.2992 2.3361 23 6 3.4571 -5.2609 2.3200 24 6 4.0906 -6.3237 1.4068 25 6 5.1540 -6.5163 2.5033 26 6 4.1048 -6.0006 3.5024 27 6 1.1322 -6.4308 2.3206 28 7 -0.1123 -6.0263 2.3377 29 7 -0.1776 -4.7438 2.3621 30 6 -1.4162 -3.9618 2.3867 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1388 35 1 1.6054 -1.7216 -1.2980 36 1 6.6473 -2.5788 -2.0684 37 1 5.1896 -1.3245 -0.0136 38 1 3.8376 -2.4818 0.0869 39 1 3.9159 0.3390 1.2542 40 1 3.9334 -1.1896 2.1673 41 1 1.3653 -2.5427 0.3877 42 1 3.8534 -4.2577 2.1625 43 1 3.4594 -7.1988 1.2521 44 1 4.4895 -5.9186 0.4767 45 1 6.0151 -5.8569 2.3952 46 1 5.4342 -7.5575 2.6630 47 1 4.5152 -5.3350 4.2618 48 1 3.4775 -6.7872 3.9218 49 1 1.4668 -7.4574 2.2985 50 1 -1.7780 -3.8221 1.3680 51 1 -2.1690 -4.4918 2.9702 52 1 -1.2230 -2.9896 2.8402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942063880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:49 Heat of formation + Delta-G solvation = 78.270539 kcal Electronic energy + Delta-G solvation = -32700.805275 eV Core-core repulsion = 28703.071223 eV Total energy + Delta-G solvation = -3997.734053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.50581 -39.75342 -38.41584 -37.60143 -34.29897 -33.34558 -32.65478 -31.34225 -30.93774 -29.83223 -27.49028 -25.97610 -25.45977 -25.38249 -25.09858 -23.13394 -21.84369 -21.31533 -21.12739 -19.89731 -18.92766 -18.65503 -17.99531 -16.77485 -16.25858 -15.78928 -15.55400 -15.28782 -14.90633 -14.79752 -14.37750 -14.12699 -14.04009 -13.75676 -13.52049 -13.27789 -13.09723 -12.94225 -12.85174 -12.58028 -12.42812 -12.27194 -12.16239 -12.09643 -11.53772 -11.43994 -11.12204 -10.86440 -10.82013 -10.74581 -10.46267 -10.41633 -10.28481 -10.27206 -10.15631 -10.10906 -9.90431 -9.79733 -9.49869 -9.10547 -8.72083 -8.55163 -8.50349 -6.66035 -5.81886 -3.30700 1.73599 2.19250 2.69641 2.83004 3.35297 3.41326 3.41728 3.44352 4.38730 4.44655 4.72706 4.80252 4.88683 4.90901 4.92438 5.10264 5.16616 5.18061 5.18870 5.26801 5.31019 5.42057 5.43240 5.53407 5.55696 5.73594 5.80811 5.86593 5.89319 5.90094 6.01671 6.05441 6.07070 6.08816 6.20592 6.26580 6.28215 6.37272 6.44939 6.56033 6.56620 6.61081 6.67899 6.69450 6.76413 6.84372 6.89244 7.34683 7.66030 7.67598 7.75403 8.08621 8.29066 8.43336 9.18114 9.78985 10.36586 11.25547 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.004276 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.460205 B = 6546.192204 C = 8374.984351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.152 3.848 5 N -0.590 5.590 6 C -0.257 4.257 7 H 0.063 0.937 8 C 0.008 3.992 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.176 3.824 15 C -0.156 4.156 16 C 0.159 3.841 17 H 0.075 0.925 18 N -0.694 5.694 19 C 0.591 3.409 20 O -0.532 6.532 21 C -0.026 4.026 22 C -0.134 4.134 23 C -0.038 4.038 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.128 4.128 27 C 0.008 3.992 28 N -0.288 5.288 29 N -0.278 5.278 30 C 0.089 3.911 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.012 0.988 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.404 0.596 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.182 0.818 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -5.368 8.253 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.312 5.312 6 C -0.387 4.387 7 H 0.081 0.919 8 C -0.191 4.191 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.050 3.950 15 C -0.196 4.196 16 C 0.055 3.945 17 H 0.093 0.907 18 N -0.345 5.345 19 C 0.374 3.626 20 O -0.407 6.407 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.057 4.057 24 C -0.167 4.167 25 C -0.179 4.179 26 C -0.166 4.166 27 C -0.170 4.170 28 N -0.119 5.119 29 N -0.066 5.066 30 C -0.052 4.052 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.240 0.760 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.199 0.801 50 H 0.103 0.897 51 H 0.114 0.886 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.479 -5.333 8.967 15.512 hybrid contribution 1.298 0.417 -1.032 1.710 sum -10.181 -4.916 7.935 13.813 Atomic orbital electron populations 1.21770 0.95843 1.01140 1.01202 1.21962 0.94508 1.00828 0.96685 0.89819 1.20910 0.86349 0.95978 0.94279 1.43992 0.98952 1.71586 1.16672 1.19093 1.00797 1.09460 1.09315 0.91948 1.25140 0.99983 0.95344 0.98641 1.69956 1.23570 1.15515 1.45428 0.86368 0.80692 0.78566 0.81063 1.20988 1.21599 1.20909 1.20738 0.99345 0.92926 0.81995 1.22610 0.93896 1.02154 1.00969 1.20999 0.95399 0.79949 0.98174 0.90669 1.46146 1.65731 1.14209 1.08407 1.16967 0.77719 0.83412 0.84537 1.90813 1.50961 1.68611 1.30363 1.21469 0.86016 0.94878 1.13037 1.20532 0.95794 0.90580 1.07521 1.20882 0.87479 0.99943 0.97436 1.22972 0.97417 0.98322 0.97990 1.22841 0.97245 1.01105 0.96692 1.22939 0.97679 0.99655 0.96334 1.23290 0.87771 0.99686 1.06225 1.73091 1.23792 0.93886 1.21093 1.45449 1.05493 1.03603 1.52019 1.22130 0.83240 0.95420 1.04397 0.93239 0.92614 0.93316 0.92465 0.97032 0.93527 0.89450 0.96225 0.91618 0.92779 0.75994 0.88413 0.90208 0.90545 0.89955 0.91631 0.91548 0.90207 0.80117 0.89661 0.88580 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.05 37.16 0.34 -1.40 16 2 C -0.12 -1.85 2.67 -90.50 -0.24 -2.09 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.15 2.86 5.50 -3.71 -0.02 2.84 16 5 N -0.59 -13.72 2.99 -172.32 -0.51 -14.24 16 6 C -0.26 -6.71 9.58 -15.06 -0.14 -6.86 16 7 H 0.06 1.61 7.85 -52.49 -0.41 1.19 16 8 C 0.01 0.22 5.05 -17.43 -0.09 0.13 16 9 N -0.90 -25.04 11.06 55.49 0.61 -24.42 16 10 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.18 3.97 5.00 -3.71 -0.02 3.95 16 15 C -0.16 -2.96 5.77 -26.61 -0.15 -3.12 16 16 C 0.16 2.59 2.25 -67.89 -0.15 2.44 16 17 H 0.08 1.23 7.51 -51.93 -0.39 0.84 16 18 N -0.69 -10.81 3.59 -54.92 -0.20 -11.01 16 19 C 0.59 9.70 6.63 -12.64 -0.08 9.61 16 20 O -0.53 -10.22 16.74 5.25 0.09 -10.13 16 21 C -0.03 -0.40 6.71 -82.06 -0.55 -0.95 16 22 C -0.13 -1.98 5.49 -104.03 -0.57 -2.55 16 23 C -0.04 -0.54 4.11 -90.96 -0.37 -0.92 16 24 C -0.13 -1.68 7.60 -25.83 -0.20 -1.88 16 25 C -0.14 -1.65 8.09 -25.83 -0.21 -1.86 16 26 C -0.13 -1.58 7.62 -25.92 -0.20 -1.77 16 27 C 0.01 0.11 11.21 -17.43 -0.20 -0.09 16 28 N -0.29 -4.06 11.90 30.59 0.36 -3.69 16 29 N -0.28 -3.75 3.75 -63.88 -0.24 -3.99 16 30 C 0.09 0.83 11.22 59.85 0.67 1.50 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 34 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.01 0.22 6.64 -51.93 -0.34 -0.12 16 36 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.09 2.27 6.11 -51.93 -0.32 1.96 16 38 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 6.28 6.72 -40.82 -0.27 6.00 16 42 H 0.10 1.64 7.93 -51.93 -0.41 1.23 16 43 H 0.08 0.91 7.26 -51.93 -0.38 0.53 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 48 H 0.08 0.89 8.00 -51.93 -0.42 0.48 16 49 H 0.18 1.89 7.74 -52.49 -0.41 1.48 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.09 0.84 7.65 -51.93 -0.40 0.45 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -30.63 408.94 -9.67 -40.31 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.74 Total: 7.94 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.19 Total: -3.00 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.03 Total: -57.36 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.63 -9.67 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.580 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds