Wall clock time and date at job start Wed Apr 1 2020 04:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.51968 * 2 1 4 4 C 1.53186 * 109.49830 * 239.91730 * 2 1 3 5 5 N 1.46931 * 108.77430 * 185.41219 * 4 2 1 6 6 C 1.36931 * 120.63109 * 233.63400 * 5 4 2 7 7 H 1.07998 * 120.00188 * 31.42249 * 6 5 4 8 8 C 1.38819 * 119.99858 * 211.42745 * 6 5 4 9 9 N 1.31612 * 119.99870 * 10.65825 * 8 6 5 10 10 Si 1.86797 * 119.99889 * 190.65577 * 8 6 5 11 11 H 1.48496 * 109.47184 * 60.00171 * 10 8 6 12 12 H 1.48500 * 109.46969 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47376 * 300.00010 * 10 8 6 14 14 C 1.46926 * 118.73672 * 53.60827 * 5 4 2 15 15 C 1.53191 * 108.77673 * 306.39200 * 14 5 4 16 16 C 1.53038 * 109.49583 * 120.07858 * 2 1 3 17 17 H 1.09005 * 109.45178 * 301.33235 * 16 2 1 18 18 N 1.46500 * 109.46200 * 61.29600 * 16 2 1 19 19 C 1.34770 * 120.00325 * 205.06633 * 18 16 2 20 20 O 1.21627 * 119.99992 * 4.68423 * 19 18 16 21 21 C 1.47169 * 120.00069 * 184.68680 * 19 18 16 22 22 C 1.38401 * 126.88729 * 91.46032 * 21 19 18 23 23 C 1.50703 * 127.31675 * 359.73753 * 22 21 19 24 24 C 1.53783 * 113.61218 * 219.13754 * 23 22 21 25 25 C 1.53953 * 87.01934 * 220.04729 * 24 23 22 26 26 C 1.53775 * 87.11024 * 25.36509 * 25 24 23 27 27 C 1.39670 * 105.36190 * 180.02562 * 22 21 19 28 28 N 1.30863 * 107.85938 * 359.97438 * 27 22 21 29 29 N 1.28441 * 110.93053 * 0.02562 * 28 27 22 30 30 C 1.46504 * 125.19202 * 180.02562 * 29 28 27 31 31 H 1.08998 * 109.46964 * 299.91830 * 1 2 3 32 32 H 1.09002 * 109.46669 * 59.92051 * 1 2 3 33 33 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58546 * 65.62829 * 4 2 1 35 35 H 1.08997 * 109.58960 * 305.19999 * 4 2 1 36 36 H 0.97003 * 120.00041 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.58306 * 186.60313 * 14 5 4 38 38 H 1.09005 * 109.58543 * 66.17887 * 14 5 4 39 39 H 1.08998 * 109.49542 * 294.68173 * 15 14 5 40 40 H 1.09007 * 109.49632 * 174.58481 * 15 14 5 41 41 H 0.97002 * 119.99599 * 25.06899 * 18 16 2 42 42 H 1.09001 * 112.85224 * 350.32718 * 23 22 21 43 43 H 1.09003 * 113.61666 * 334.57085 * 24 23 22 44 44 H 1.09007 * 113.61386 * 105.46756 * 24 23 22 45 45 H 1.08996 * 113.53906 * 270.81107 * 25 24 23 46 46 H 1.09003 * 113.66381 * 139.93027 * 25 24 23 47 47 H 1.09009 * 113.61254 * 220.09142 * 26 25 24 48 48 H 1.08999 * 113.61974 * 89.18647 * 26 25 24 49 49 H 1.07995 * 126.07153 * 179.97438 * 27 22 21 50 50 H 1.09002 * 109.47093 * 274.84409 * 30 29 28 51 51 H 1.08998 * 109.47174 * 34.84412 * 30 29 28 52 52 H 1.08996 * 109.46811 * 154.84379 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2937 -0.3784 -2.1939 7 1 3.9736 0.4613 -2.7928 8 6 5.5050 -1.0010 -2.4626 9 7 5.8010 -2.1436 -1.8803 10 14 6.7147 -0.2171 -3.6507 11 1 7.1048 1.1242 -3.1468 12 1 7.9222 -1.0740 -3.7648 13 1 6.0786 -0.0787 -4.9854 14 6 4.1054 -1.4266 0.0309 15 6 3.5709 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2484 17 1 1.6581 -0.2242 2.1388 18 7 1.5784 -2.1130 1.2309 19 6 1.4489 -2.7947 2.3862 20 8 1.6336 -2.2318 3.4485 21 6 1.0842 -4.2203 2.3626 22 6 1.9507 -5.2992 2.3361 23 6 3.4571 -5.2609 2.3200 24 6 4.0906 -6.3237 1.4068 25 6 5.1540 -6.5163 2.5033 26 6 4.1048 -6.0006 3.5024 27 6 1.1322 -6.4308 2.3206 28 7 -0.1123 -6.0263 2.3377 29 7 -0.1776 -4.7438 2.3621 30 6 -1.4162 -3.9618 2.3867 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1388 35 1 1.6054 -1.7216 -1.2980 36 1 6.6473 -2.5788 -2.0684 37 1 5.1896 -1.3245 -0.0136 38 1 3.8376 -2.4818 0.0869 39 1 3.9159 0.3390 1.2542 40 1 3.9334 -1.1896 2.1673 41 1 1.3653 -2.5427 0.3877 42 1 3.8534 -4.2577 2.1625 43 1 3.4594 -7.1988 1.2521 44 1 4.4895 -5.9186 0.4767 45 1 6.0151 -5.8569 2.3952 46 1 5.4342 -7.5575 2.6630 47 1 4.5152 -5.3350 4.2618 48 1 3.4775 -6.7872 3.9218 49 1 1.4668 -7.4574 2.2985 50 1 -1.7780 -3.8221 1.3680 51 1 -2.1690 -4.4918 2.9702 52 1 -1.2230 -2.9896 2.8402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942063880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:48 Heat of formation + Delta-G solvation = 61.490822 kcal Electronic energy + Delta-G solvation = -32701.532898 eV Core-core repulsion = 28703.071223 eV Total energy + Delta-G solvation = -3998.461676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.57026 -41.14830 -39.46610 -39.10166 -36.01204 -34.29725 -34.07730 -32.90893 -32.40907 -31.33305 -28.42431 -27.39541 -27.10871 -26.43112 -26.23651 -24.52474 -23.41991 -22.68718 -22.32351 -21.08937 -20.17112 -19.96475 -19.17528 -18.62494 -17.40363 -16.92325 -16.87439 -16.67449 -16.45303 -16.06342 -15.73877 -15.53540 -15.37214 -15.23283 -14.85495 -14.66167 -14.39171 -14.11326 -13.93389 -13.75031 -13.56515 -13.43467 -13.27087 -13.16573 -13.08161 -12.92251 -12.70453 -12.56133 -12.38984 -12.23670 -11.96177 -11.88231 -11.70526 -11.55244 -11.49484 -11.35100 -11.27869 -11.17820 -11.11700 -10.52640 -10.16080 -10.12755 -9.63438 -8.59212 -7.83999 -5.35053 0.61472 1.05763 1.47778 1.49388 1.55543 1.62510 1.67862 2.23412 2.51639 3.31938 3.43972 3.50812 3.68878 3.72886 3.79244 3.88733 3.95258 4.04056 4.10064 4.11064 4.22860 4.26699 4.31895 4.39652 4.50637 4.54172 4.57956 4.64540 4.69600 4.75451 4.79599 4.87699 4.89387 4.95960 5.00157 5.00687 5.06985 5.10819 5.14460 5.17037 5.29906 5.40110 5.40924 5.45156 5.50816 5.54137 5.62629 5.66222 5.76380 5.77544 6.34498 6.42913 6.96952 7.03382 7.17982 7.87297 8.39807 9.20681 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.004276 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.460205 B = 6546.192204 C = 8374.984351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.081 0.919 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.264 4.264 7 H 0.066 0.934 8 C -0.044 4.044 9 N -0.930 5.930 10 Si 0.963 3.037 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.275 1.275 14 C 0.192 3.808 15 C -0.146 4.146 16 C 0.166 3.834 17 H 0.085 0.915 18 N -0.686 5.686 19 C 0.600 3.400 20 O -0.562 6.562 21 C -0.049 4.049 22 C -0.144 4.144 23 C -0.048 4.048 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.119 4.119 27 C 0.008 3.992 28 N -0.293 5.293 29 N -0.274 5.274 30 C 0.078 3.922 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.248 0.752 37 H 0.047 0.953 38 H 0.000 1.000 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.405 0.595 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.210 0.790 50 H 0.105 0.895 51 H 0.116 0.884 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 -5.736 8.388 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.394 4.394 7 H 0.084 0.916 8 C -0.240 4.240 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.066 3.934 15 C -0.186 4.186 16 C 0.061 3.939 17 H 0.103 0.897 18 N -0.336 5.336 19 C 0.384 3.616 20 O -0.440 6.440 21 C -0.178 4.178 22 C -0.155 4.155 23 C -0.067 4.067 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.157 4.157 27 C -0.169 4.169 28 N -0.124 5.124 29 N -0.062 5.062 30 C -0.061 4.061 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.242 0.758 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.118 0.882 49 H 0.227 0.773 50 H 0.123 0.877 51 H 0.134 0.866 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.629 -5.682 9.088 17.338 hybrid contribution 1.917 0.545 -1.081 2.267 sum -11.712 -5.137 8.007 15.089 Atomic orbital electron populations 1.21705 0.92585 1.02154 1.02674 1.21810 0.97046 0.99771 0.94004 0.90022 1.21070 0.83691 0.96640 0.96177 1.44189 1.00845 1.71567 1.16271 1.19426 1.01295 1.09295 1.09410 0.91635 1.25835 1.01721 0.95919 1.00508 1.70124 1.23583 1.16866 1.46985 0.85418 0.78410 0.77567 0.79456 1.20569 1.22295 1.20114 1.20363 0.97086 0.92320 0.83610 1.22437 0.96221 1.01297 0.98617 1.20903 0.93154 0.80622 0.99173 0.89750 1.46049 1.65251 1.13911 1.08375 1.17066 0.76771 0.83803 0.84009 1.90789 1.52433 1.69460 1.31357 1.21378 0.87382 0.94225 1.14809 1.20696 0.95824 0.91258 1.07726 1.20837 0.87839 0.98624 0.99433 1.22979 0.98058 0.98452 0.96811 1.22794 0.96388 1.02318 0.95609 1.22924 0.97650 0.99602 0.95499 1.23706 0.87154 1.00502 1.05508 1.73090 1.24053 0.94086 1.21131 1.45793 1.05840 1.03596 1.50973 1.22483 0.82170 0.95309 1.06135 0.91669 0.91280 0.92556 0.92281 0.96627 0.94260 0.93426 0.98236 0.91628 0.93547 0.75820 0.92083 0.87914 0.93282 0.91244 0.89053 0.92235 0.88247 0.77313 0.87672 0.86594 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.05 71.98 0.65 -2.21 16 2 C -0.11 -3.12 2.67 -10.72 -0.03 -3.14 16 3 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.15 5.55 5.50 86.36 0.48 6.02 16 5 N -0.61 -28.69 2.99 -699.11 -2.09 -30.77 16 6 C -0.26 -13.97 9.58 84.04 0.81 -13.16 16 7 H 0.07 3.37 7.85 -2.91 -0.02 3.34 16 8 C -0.04 -2.39 5.05 84.86 0.43 -1.96 16 9 N -0.93 -53.79 11.06 21.65 0.24 -53.56 16 10 Si 0.96 44.10 29.57 68.60 2.03 46.13 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.19 9.09 5.00 86.36 0.43 9.52 16 15 C -0.15 -5.68 5.77 30.67 0.18 -5.51 16 16 C 0.17 5.32 2.25 45.02 0.10 5.42 16 17 H 0.08 2.66 7.51 -2.38 -0.02 2.64 16 18 N -0.69 -21.23 3.59 -445.93 -1.60 -22.83 16 19 C 0.60 19.70 6.63 86.59 0.57 20.28 16 20 O -0.56 -21.72 16.74 -4.12 -0.07 -21.79 16 21 C -0.05 -1.49 6.71 40.79 0.27 -1.22 16 22 C -0.14 -4.20 5.49 -19.48 -0.11 -4.31 16 23 C -0.05 -1.41 4.11 -11.01 -0.05 -1.45 16 24 C -0.13 -3.27 7.60 31.18 0.24 -3.04 16 25 C -0.13 -3.06 8.09 31.18 0.25 -2.81 16 26 C -0.12 -2.86 7.62 31.12 0.24 -2.63 16 27 C 0.01 0.20 11.21 85.18 0.95 1.15 16 28 N -0.29 -7.64 11.90 -57.14 -0.68 -8.32 16 29 N -0.27 -6.96 3.75 -356.01 -1.33 -8.30 16 30 C 0.08 1.28 11.22 127.77 1.43 2.72 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.13 7.54 -2.39 -0.02 1.12 16 34 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 35 H 0.02 0.58 6.64 -2.39 -0.02 0.57 16 36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.05 2.63 6.11 -2.39 -0.01 2.61 16 38 H 0.00 -0.02 7.74 -2.38 -0.02 -0.04 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.41 12.46 6.72 -92.71 -0.62 11.84 16 42 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 43 H 0.10 2.18 7.26 -2.39 -0.02 2.16 16 44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.10 2.01 8.00 -2.39 -0.02 1.99 16 49 H 0.21 3.73 7.74 -2.91 -0.02 3.71 16 50 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.09 1.52 7.65 -2.39 -0.02 1.51 16 Total: -1.00 -68.18 408.94 3.64 -64.55 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.29 Total: 31.21 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.85 Total: 3.68 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.46 Total: -123.78 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.07 Total: -21.79 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.18 3.64 -64.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.037 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds