Wall clock time and date at job start Wed Apr 1 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52450 * 2 1 4 4 C 1.53197 * 109.49557 * 120.07957 * 2 1 3 5 5 N 1.46920 * 108.77107 * 174.58623 * 4 2 1 6 6 C 1.36944 * 120.62782 * 126.36879 * 5 4 2 7 7 H 1.07992 * 120.00153 * 331.82528 * 6 5 4 8 8 C 1.38818 * 119.99451 * 151.83049 * 6 5 4 9 9 N 1.31612 * 120.00466 * 343.08331 * 8 6 5 10 10 Si 1.86804 * 119.99625 * 163.08482 * 8 6 5 11 11 H 1.48505 * 109.47039 * 89.99756 * 10 8 6 12 12 H 1.48496 * 109.47048 * 210.00040 * 10 8 6 13 13 H 1.48496 * 109.47189 * 329.99934 * 10 8 6 14 14 C 1.46927 * 118.74282 * 306.39134 * 5 4 2 15 15 C 1.53188 * 108.76382 * 53.61711 * 14 5 4 16 16 C 1.53038 * 109.49597 * 239.91397 * 2 1 3 17 17 H 1.08995 * 109.46468 * 298.69001 * 16 2 1 18 18 N 1.46501 * 109.45554 * 58.66625 * 16 2 1 19 19 C 1.34777 * 119.99751 * 205.02454 * 18 16 2 20 20 O 1.21288 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00285 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.47459 * 179.97438 * 21 19 18 23 23 C 1.34851 * 125.96253 * 124.71251 * 22 21 19 24 24 N 1.36316 * 106.68492 * 179.88649 * 23 22 21 25 25 C 1.35411 * 107.40102 * 0.41938 * 24 23 22 26 26 N 1.30096 * 108.63115 * 359.69214 * 25 24 23 27 27 C 1.51043 * 123.98360 * 179.67028 * 25 24 23 28 28 C 1.53399 * 108.21247 * 344.05570 * 27 25 24 29 29 C 1.53154 * 109.23447 * 48.82184 * 28 27 25 30 30 C 1.46475 * 127.77727 * 180.22592 * 24 23 22 31 31 H 1.08999 * 109.47182 * 180.08354 * 1 2 3 32 32 H 1.09002 * 109.47115 * 300.08013 * 1 2 3 33 33 H 1.08999 * 109.47454 * 60.07929 * 1 2 3 34 34 H 1.08997 * 109.58272 * 294.37011 * 4 2 1 35 35 H 1.08996 * 109.58523 * 54.65525 * 4 2 1 36 36 H 0.97001 * 120.00270 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.59226 * 173.40001 * 14 5 4 38 38 H 1.09006 * 109.58287 * 293.67888 * 14 5 4 39 39 H 1.09003 * 109.48890 * 185.40467 * 15 14 5 40 40 H 1.08994 * 109.50942 * 65.30755 * 15 14 5 41 41 H 0.96997 * 120.00349 * 24.74956 * 18 16 2 42 42 H 1.08998 * 109.47132 * 300.00348 * 21 19 18 43 43 H 1.09004 * 109.47389 * 59.99742 * 21 19 18 44 44 H 1.08000 * 126.66003 * 359.97438 * 23 22 21 45 45 H 1.09000 * 109.71698 * 103.73686 * 27 25 24 46 46 H 1.09002 * 109.71803 * 224.33039 * 27 25 24 47 47 H 1.08995 * 109.50741 * 168.75160 * 28 27 25 48 48 H 1.09000 * 109.50853 * 288.84902 * 28 27 25 49 49 H 1.09005 * 109.46161 * 50.52088 * 29 28 27 50 50 H 1.08999 * 109.45855 * 170.50454 * 29 28 27 51 51 H 1.09007 * 109.58351 * 43.32131 * 30 24 23 52 52 H 1.09002 * 109.69632 * 282.97842 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2497 5 7 3.5045 -0.8291 1.1696 6 6 4.2936 -0.3784 2.1941 7 1 3.9500 0.4271 2.8261 8 6 5.5350 -0.9569 2.4202 9 7 5.8212 -2.1282 1.8926 10 14 6.7995 -0.0729 3.4734 11 1 6.6301 -0.4756 4.8927 12 1 8.1650 -0.4350 3.0157 13 1 6.6086 1.3944 3.3490 14 6 4.1053 -1.4267 -0.0307 15 6 3.5708 -0.6947 -1.2658 16 6 2.0408 -0.7232 -1.2483 17 1 1.6969 -1.7574 -1.2351 18 7 1.5265 -0.0530 -2.4452 19 6 1.3979 -0.7385 -3.5985 20 8 1.7084 -1.9100 -3.6455 21 6 0.8694 -0.0491 -4.8299 22 6 0.8250 -1.0288 -5.9742 23 6 -0.2592 -1.3297 -6.7175 24 7 0.1409 -2.2525 -7.6376 25 6 1.4557 -2.4949 -7.4227 26 7 1.8568 -1.7590 -6.4277 27 6 2.2778 -3.4696 -8.2324 28 6 1.3164 -4.3789 -9.0082 29 6 0.2683 -3.5166 -9.7177 30 6 -0.6683 -2.8913 -8.6781 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.7638 -0.1578 2.1389 35 1 1.6032 -1.7206 1.2994 36 1 6.6885 -2.5326 2.0509 37 1 5.1896 -1.3246 0.0138 38 1 3.8396 -2.4825 -0.0853 39 1 3.9336 -1.1893 -2.1669 40 1 3.9157 0.3391 -1.2538 41 1 1.2748 0.8829 -2.4067 42 1 -0.1348 0.3264 -4.6334 43 1 1.5239 0.7829 -5.0897 44 1 -1.2515 -0.9182 -6.6065 45 1 2.9123 -2.9241 -8.9309 46 1 2.8966 -4.0708 -7.5662 47 1 1.8753 -4.9538 -9.7466 48 1 0.8208 -5.0596 -8.3160 49 1 0.7674 -2.7266 -10.2789 50 1 -0.3105 -4.1377 -10.4013 51 1 -1.3011 -2.1450 -9.1585 52 1 -1.2915 -3.6675 -8.2341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942064215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:44 Heat of formation + Delta-G solvation = 31.511747 kcal Electronic energy + Delta-G solvation = -30711.156760 eV Core-core repulsion = 26711.395094 eV Total energy + Delta-G solvation = -3999.761666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.40468 -39.50768 -37.57047 -36.81162 -34.34577 -33.39957 -32.57963 -31.83472 -31.05627 -29.75985 -29.03826 -27.52361 -25.78752 -24.89970 -24.09886 -22.50823 -22.18357 -20.94112 -20.62017 -19.81123 -19.32822 -18.97578 -17.13551 -16.77564 -16.50310 -15.95905 -15.72517 -15.14947 -14.71955 -14.56760 -14.46190 -14.35504 -13.88442 -13.83597 -13.80719 -13.56890 -13.46063 -13.02199 -12.77595 -12.69949 -12.40366 -12.27342 -12.04238 -11.82593 -11.56286 -11.45308 -11.38222 -11.35135 -11.20297 -10.98040 -10.71705 -10.56041 -10.22030 -10.15655 -9.91128 -9.84234 -9.67692 -9.57464 -9.53689 -9.22326 -8.51303 -8.30276 -8.24234 -6.59739 -5.71317 -3.14265 1.95068 2.61512 3.04728 3.12068 3.42078 3.49028 3.51290 3.73067 4.02023 4.15839 4.22320 4.30336 4.55155 4.69404 4.83674 4.91002 4.94543 5.00625 5.15288 5.21413 5.26231 5.31044 5.38056 5.41138 5.44276 5.49418 5.50049 5.59976 5.61715 5.73881 5.74310 5.86593 6.03263 6.08914 6.21134 6.23877 6.35909 6.38315 6.55045 6.57404 6.68242 6.76222 6.77831 6.92623 7.06042 7.11318 7.14164 7.48849 7.77794 7.86469 7.97717 8.17737 8.52439 8.73157 9.28266 9.91977 10.49116 11.37095 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.002151 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.967121 B =13012.217789 C =14004.108611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.174 3.826 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.078 0.922 18 N -0.729 5.729 19 C 0.511 3.489 20 O -0.520 6.520 21 C -0.055 4.055 22 C 0.022 3.978 23 C -0.054 4.054 24 N -0.459 5.459 25 C 0.206 3.794 26 N -0.455 5.455 27 C -0.034 4.034 28 C -0.126 4.126 29 C -0.134 4.134 30 C 0.104 3.896 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.172 0.828 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 1.718 -24.450 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 H 0.088 0.912 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.187 4.187 16 C 0.057 3.943 17 H 0.096 0.904 18 N -0.380 5.380 19 C 0.296 3.704 20 O -0.394 6.394 21 C -0.096 4.096 22 C -0.108 4.108 23 C -0.187 4.187 24 N -0.143 5.143 25 C -0.057 4.057 26 N -0.173 5.173 27 C -0.073 4.073 28 C -0.164 4.164 29 C -0.172 4.172 30 C -0.018 4.018 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.225 0.775 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.189 0.811 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.128 0.703 -24.241 28.583 hybrid contribution -0.403 0.922 0.272 1.043 sum -15.531 1.625 -23.969 28.607 Atomic orbital electron populations 1.21759 0.95943 1.01449 1.00691 1.21962 0.94386 1.00554 0.96647 0.91158 1.20880 0.86020 0.96547 0.93776 1.44098 0.99261 1.71475 1.16659 1.19148 0.98532 1.11849 1.08734 0.91748 1.25061 0.99978 0.95367 0.99270 1.70037 1.22142 1.14493 1.47820 0.86322 0.81196 0.79391 0.79998 1.21451 1.21586 1.20527 1.20751 0.99334 0.93095 0.82066 1.22548 0.94150 1.01331 1.00629 1.20958 0.94397 0.96683 0.82273 0.90369 1.46268 1.66915 1.14153 1.10667 1.20333 0.78552 0.87480 0.84047 1.90737 1.48325 1.16195 1.84183 1.19889 1.02951 0.96717 0.90031 1.19957 0.89819 1.01669 0.99390 1.22146 1.00630 0.99526 0.96376 1.45280 1.10253 1.32604 1.26185 1.23270 0.82561 1.01947 0.97906 1.69977 1.30347 1.08225 1.08717 1.20175 0.95959 0.94093 0.97037 1.21678 0.97104 0.97854 0.99744 1.21891 0.97720 1.00238 0.97336 1.21925 0.93876 0.97827 0.88180 0.93032 0.92911 0.93437 0.92542 0.96334 0.93620 0.89392 0.96246 0.92725 0.92810 0.77501 0.88288 0.88183 0.81083 0.89470 0.88550 0.89983 0.91075 0.90634 0.89405 0.89450 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.03 37.16 0.34 -1.61 16 2 C -0.11 -1.98 2.46 -90.50 -0.22 -2.20 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.16 3.31 5.80 -3.71 -0.02 3.29 16 5 N -0.59 -15.29 2.99 -172.32 -0.52 -15.81 16 6 C -0.25 -7.08 9.58 -15.05 -0.14 -7.22 16 7 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 8 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 9 N -0.90 -27.04 11.20 55.49 0.62 -26.41 16 10 Si 0.90 22.14 29.59 -169.99 -5.03 17.11 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.17 4.44 5.30 -3.71 -0.02 4.42 16 15 C -0.15 -3.13 5.65 -26.61 -0.15 -3.28 16 16 C 0.16 2.96 1.88 -67.89 -0.13 2.83 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 18 N -0.73 -10.86 4.37 -53.77 -0.23 -11.09 16 19 C 0.51 8.31 7.79 -10.99 -0.09 8.22 16 20 O -0.52 -11.08 15.23 5.55 0.08 -10.99 16 21 C -0.05 -0.66 6.26 -29.03 -0.18 -0.84 16 22 C 0.02 0.31 5.87 -82.71 -0.49 -0.18 16 23 C -0.05 -0.60 11.53 -16.76 -0.19 -0.80 16 24 N -0.46 -4.81 3.13 -113.75 -0.36 -5.17 16 25 C 0.21 2.66 7.65 -155.25 -1.19 1.47 16 26 N -0.46 -7.49 10.62 -6.88 -0.07 -7.56 16 27 C -0.03 -0.31 6.33 -27.51 -0.17 -0.48 16 28 C -0.13 -0.75 5.96 -26.44 -0.16 -0.91 16 29 C -0.13 -0.62 5.94 -26.52 -0.16 -0.78 16 30 C 0.10 0.63 6.98 -3.92 -0.03 0.60 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.56 7.35 -51.93 -0.38 0.18 16 34 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.39 4.55 8.29 -40.82 -0.34 4.22 16 42 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 49 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 50 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -37.29 407.18 -11.45 -48.74 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.00 Total: 2.54 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.09 Total: 2.52 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -0.56 Total: -66.05 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.29 -11.45 -48.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942064215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.248 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds