Wall clock time and date at job start Wed Apr 1 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52450 * 2 1 4 4 C 1.53197 * 109.49557 * 120.07957 * 2 1 3 5 5 N 1.46920 * 108.77107 * 174.58623 * 4 2 1 6 6 C 1.36944 * 120.62782 * 126.36879 * 5 4 2 7 7 H 1.07992 * 120.00153 * 331.82528 * 6 5 4 8 8 C 1.38818 * 119.99451 * 151.83049 * 6 5 4 9 9 N 1.31612 * 120.00466 * 343.08331 * 8 6 5 10 10 Si 1.86804 * 119.99625 * 163.08482 * 8 6 5 11 11 H 1.48505 * 109.47039 * 89.99756 * 10 8 6 12 12 H 1.48496 * 109.47048 * 210.00040 * 10 8 6 13 13 H 1.48496 * 109.47189 * 329.99934 * 10 8 6 14 14 C 1.46927 * 118.74282 * 306.39134 * 5 4 2 15 15 C 1.53188 * 108.76382 * 53.61711 * 14 5 4 16 16 C 1.53038 * 109.49597 * 239.91397 * 2 1 3 17 17 H 1.08995 * 109.46468 * 298.69001 * 16 2 1 18 18 N 1.46501 * 109.45554 * 58.66625 * 16 2 1 19 19 C 1.34777 * 119.99751 * 205.02454 * 18 16 2 20 20 O 1.21288 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00285 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.47459 * 179.97438 * 21 19 18 23 23 C 1.34851 * 125.96253 * 124.71251 * 22 21 19 24 24 N 1.36316 * 106.68492 * 179.88649 * 23 22 21 25 25 C 1.35411 * 107.40102 * 0.41938 * 24 23 22 26 26 N 1.30096 * 108.63115 * 359.69214 * 25 24 23 27 27 C 1.51043 * 123.98360 * 179.67028 * 25 24 23 28 28 C 1.53399 * 108.21247 * 344.05570 * 27 25 24 29 29 C 1.53154 * 109.23447 * 48.82184 * 28 27 25 30 30 C 1.46475 * 127.77727 * 180.22592 * 24 23 22 31 31 H 1.08999 * 109.47182 * 180.08354 * 1 2 3 32 32 H 1.09002 * 109.47115 * 300.08013 * 1 2 3 33 33 H 1.08999 * 109.47454 * 60.07929 * 1 2 3 34 34 H 1.08997 * 109.58272 * 294.37011 * 4 2 1 35 35 H 1.08996 * 109.58523 * 54.65525 * 4 2 1 36 36 H 0.97001 * 120.00270 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.59226 * 173.40001 * 14 5 4 38 38 H 1.09006 * 109.58287 * 293.67888 * 14 5 4 39 39 H 1.09003 * 109.48890 * 185.40467 * 15 14 5 40 40 H 1.08994 * 109.50942 * 65.30755 * 15 14 5 41 41 H 0.96997 * 120.00349 * 24.74956 * 18 16 2 42 42 H 1.08998 * 109.47132 * 300.00348 * 21 19 18 43 43 H 1.09004 * 109.47389 * 59.99742 * 21 19 18 44 44 H 1.08000 * 126.66003 * 359.97438 * 23 22 21 45 45 H 1.09000 * 109.71698 * 103.73686 * 27 25 24 46 46 H 1.09002 * 109.71803 * 224.33039 * 27 25 24 47 47 H 1.08995 * 109.50741 * 168.75160 * 28 27 25 48 48 H 1.09000 * 109.50853 * 288.84902 * 28 27 25 49 49 H 1.09005 * 109.46161 * 50.52088 * 29 28 27 50 50 H 1.08999 * 109.45855 * 170.50454 * 29 28 27 51 51 H 1.09007 * 109.58351 * 43.32131 * 30 24 23 52 52 H 1.09002 * 109.69632 * 282.97842 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2497 5 7 3.5045 -0.8291 1.1696 6 6 4.2936 -0.3784 2.1941 7 1 3.9500 0.4271 2.8261 8 6 5.5350 -0.9569 2.4202 9 7 5.8212 -2.1282 1.8926 10 14 6.7995 -0.0729 3.4734 11 1 6.6301 -0.4756 4.8927 12 1 8.1650 -0.4350 3.0157 13 1 6.6086 1.3944 3.3490 14 6 4.1053 -1.4267 -0.0307 15 6 3.5708 -0.6947 -1.2658 16 6 2.0408 -0.7232 -1.2483 17 1 1.6969 -1.7574 -1.2351 18 7 1.5265 -0.0530 -2.4452 19 6 1.3979 -0.7385 -3.5985 20 8 1.7084 -1.9100 -3.6455 21 6 0.8694 -0.0491 -4.8299 22 6 0.8250 -1.0288 -5.9742 23 6 -0.2592 -1.3297 -6.7175 24 7 0.1409 -2.2525 -7.6376 25 6 1.4557 -2.4949 -7.4227 26 7 1.8568 -1.7590 -6.4277 27 6 2.2778 -3.4696 -8.2324 28 6 1.3164 -4.3789 -9.0082 29 6 0.2683 -3.5166 -9.7177 30 6 -0.6683 -2.8913 -8.6781 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.7638 -0.1578 2.1389 35 1 1.6032 -1.7206 1.2994 36 1 6.6885 -2.5326 2.0509 37 1 5.1896 -1.3246 0.0138 38 1 3.8396 -2.4825 -0.0853 39 1 3.9336 -1.1893 -2.1669 40 1 3.9157 0.3391 -1.2538 41 1 1.2748 0.8829 -2.4067 42 1 -0.1348 0.3264 -4.6334 43 1 1.5239 0.7829 -5.0897 44 1 -1.2515 -0.9182 -6.6065 45 1 2.9123 -2.9241 -8.9309 46 1 2.8966 -4.0708 -7.5662 47 1 1.8753 -4.9538 -9.7466 48 1 0.8208 -5.0596 -8.3160 49 1 0.7674 -2.7266 -10.2789 50 1 -0.3105 -4.1377 -10.4013 51 1 -1.3011 -2.1450 -9.1585 52 1 -1.2915 -3.6675 -8.2341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942064215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:43 Heat of formation + Delta-G solvation = 7.271590 kcal Electronic energy + Delta-G solvation = -30712.207892 eV Core-core repulsion = 26711.395094 eV Total energy + Delta-G solvation = -4000.812798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.21823 -40.92013 -39.12963 -37.49490 -36.11395 -34.16375 -34.12882 -32.97011 -32.80166 -31.42025 -29.80596 -28.43649 -27.41029 -26.62990 -24.86285 -23.86451 -23.12383 -22.64710 -21.82486 -21.18829 -20.49334 -19.91575 -18.74902 -17.94279 -17.66128 -17.17990 -16.72647 -16.67042 -16.21374 -15.62151 -15.54445 -15.29672 -15.15690 -15.09156 -14.83656 -14.61763 -14.57035 -14.46063 -14.37006 -14.13971 -13.62124 -13.37592 -13.14281 -13.01678 -12.95792 -12.72175 -12.62373 -12.58960 -12.27652 -12.07645 -12.06089 -12.03689 -11.94928 -11.86502 -11.65362 -11.54505 -11.24968 -10.83076 -10.62470 -10.57059 -10.36827 -9.87699 -9.10527 -8.71938 -7.87972 -5.35137 1.13109 1.46048 1.48192 1.58169 1.85871 1.94237 2.06062 2.50812 2.53539 3.27736 3.38413 3.62633 3.63335 3.73697 3.78334 3.80449 3.99326 4.06255 4.19679 4.20318 4.27134 4.36133 4.38936 4.41368 4.47098 4.55419 4.60918 4.66497 4.73475 4.77751 4.83216 4.84808 4.87188 4.93612 4.96239 4.99287 5.04362 5.10057 5.12288 5.19211 5.26727 5.31623 5.38941 5.45034 5.52230 5.62193 5.66435 5.69467 5.86693 6.36139 6.37070 6.78402 7.11464 7.31003 7.51249 7.82571 8.36534 9.19213 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.002151 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.967121 B =13012.217789 C =14004.108611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.148 3.852 5 N -0.609 5.609 6 C -0.261 4.261 7 H 0.075 0.925 8 C -0.057 4.057 9 N -0.940 5.940 10 Si 0.972 3.028 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.265 1.265 14 C 0.185 3.815 15 C -0.130 4.130 16 C 0.174 3.826 17 H 0.046 0.954 18 N -0.712 5.712 19 C 0.507 3.493 20 O -0.578 6.578 21 C -0.043 4.043 22 C -0.024 4.024 23 C -0.040 4.040 24 N -0.456 5.456 25 C 0.184 3.816 26 N -0.518 5.518 27 C -0.037 4.037 28 C -0.120 4.120 29 C -0.128 4.128 30 C 0.095 3.905 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.006 0.994 36 H 0.249 0.751 37 H 0.054 0.946 38 H -0.017 1.017 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.414 0.586 42 H 0.145 0.855 43 H 0.114 0.886 44 H 0.211 0.789 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.118 0.882 51 H 0.113 0.887 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.374 4.265 -26.078 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.391 4.391 7 H 0.093 0.907 8 C -0.252 4.252 9 N -0.586 5.586 10 Si 0.799 3.201 11 H -0.209 1.209 12 H -0.223 1.223 13 H -0.190 1.190 14 C 0.058 3.942 15 C -0.170 4.170 16 C 0.068 3.932 17 H 0.065 0.935 18 N -0.364 5.364 19 C 0.295 3.705 20 O -0.456 6.456 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.175 4.175 24 N -0.139 5.139 25 C -0.079 4.079 26 N -0.236 5.236 27 C -0.076 4.076 28 C -0.158 4.158 29 C -0.166 4.166 30 C -0.026 4.026 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.001 0.999 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.163 0.837 43 H 0.132 0.868 44 H 0.228 0.772 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.136 0.864 51 H 0.131 0.869 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.349 3.304 -25.892 31.906 hybrid contribution 0.543 0.058 0.761 0.937 sum -17.805 3.362 -25.131 30.982 Atomic orbital electron populations 1.21703 0.92504 1.01668 1.03089 1.21756 0.97033 0.99819 0.93326 0.90029 1.21102 0.83420 0.96654 0.96572 1.44338 1.01196 1.71383 1.16253 1.19572 0.99002 1.11751 1.08792 0.90719 1.25936 1.02109 0.96033 1.01134 1.70223 1.22269 1.16276 1.49875 0.85217 0.77958 0.78751 0.78163 1.20922 1.22251 1.18998 1.20427 0.97558 0.91845 0.84373 1.22295 0.96692 1.00561 0.97493 1.20522 0.92024 0.95901 0.84725 0.93548 1.45976 1.66154 1.15034 1.09250 1.21229 0.77265 0.86900 0.85143 1.90722 1.50753 1.19065 1.85078 1.19952 1.05427 0.96069 0.86877 1.20448 0.90534 1.03179 1.01120 1.22735 1.01264 0.98357 0.95096 1.45585 1.09787 1.31972 1.26541 1.23744 0.84118 1.02184 0.97820 1.69891 1.32784 1.10211 1.10761 1.20306 0.96473 0.93997 0.96834 1.21671 0.97053 0.97379 0.99694 1.21912 0.97278 1.00281 0.97106 1.22335 0.93995 0.98708 0.87563 0.93946 0.91080 0.90482 0.91464 0.97638 0.94202 0.92764 0.99855 0.94447 0.91995 0.74873 0.83728 0.86764 0.77213 0.88663 0.90630 0.87893 0.92015 0.90643 0.86402 0.86864 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.03 71.98 0.65 -2.57 16 2 C -0.10 -3.25 2.46 -10.71 -0.03 -3.28 16 3 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.15 6.33 5.80 86.37 0.50 6.83 16 5 N -0.61 -32.27 2.99 -699.10 -2.09 -34.36 16 6 C -0.26 -14.79 9.58 84.03 0.81 -13.99 16 7 H 0.08 4.01 7.88 -2.91 -0.02 3.99 16 8 C -0.06 -3.34 4.92 84.86 0.42 -2.92 16 9 N -0.94 -59.09 11.20 21.65 0.24 -58.85 16 10 Si 0.97 46.31 29.59 68.60 2.03 48.34 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 C 0.18 10.03 5.30 86.36 0.46 10.49 16 15 C -0.13 -5.79 5.65 30.67 0.17 -5.61 16 16 C 0.17 6.44 1.88 45.02 0.08 6.53 16 17 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 18 N -0.71 -20.13 4.37 -442.40 -1.93 -22.07 16 19 C 0.51 16.25 7.79 87.66 0.68 16.93 16 20 O -0.58 -25.68 15.23 -3.06 -0.05 -25.73 16 21 C -0.04 -0.94 6.26 29.10 0.18 -0.76 16 22 C -0.02 -0.65 5.87 41.41 0.24 -0.40 16 23 C -0.04 -0.81 11.53 83.22 0.96 0.15 16 24 N -0.46 -8.87 3.13 -513.81 -1.61 -10.48 16 25 C 0.18 4.86 7.65 138.24 1.06 5.92 16 26 N -0.52 -17.66 10.62 -175.69 -1.87 -19.52 16 27 C -0.04 -0.71 6.33 30.09 0.19 -0.52 16 28 C -0.12 -1.30 5.96 30.78 0.18 -1.11 16 29 C -0.13 -0.84 5.94 30.73 0.18 -0.65 16 30 C 0.09 0.86 6.98 86.47 0.60 1.46 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.46 7.35 -2.39 -0.02 1.44 16 34 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 35 H 0.01 0.25 8.14 -2.39 -0.02 0.24 16 36 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.05 3.28 6.06 -2.39 -0.01 3.27 16 38 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 41 H 0.41 8.17 8.29 -92.71 -0.77 7.41 16 42 H 0.14 1.75 8.11 -2.39 -0.02 1.73 16 43 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.78 8.12 -2.39 -0.02 0.77 16 49 H 0.07 0.53 8.12 -2.38 -0.02 0.51 16 50 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 52 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -89.20 407.18 2.21 -86.99 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.14 Total: 19.18 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.35 Total: 16.50 kcal Atomic # 7 Polarization: -138.02 SS G_CDS: -7.26 Total: -145.28 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -89.20 2.21 -86.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942064215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.262 kcal (2) G-P(sol) polarization free energy of solvation -89.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds