Wall clock time and date at job start Wed Apr 1 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52238 * 2 1 4 4 C 1.53187 * 109.49654 * 239.91714 * 2 1 3 5 5 N 1.46920 * 108.77974 * 185.41340 * 4 2 1 6 6 C 1.36944 * 120.63403 * 233.59302 * 5 4 2 7 7 H 1.07995 * 120.00273 * 153.23939 * 6 5 4 8 8 C 1.38809 * 119.99420 * 333.23274 * 6 5 4 9 9 N 1.31622 * 119.99743 * 158.75450 * 8 6 5 10 10 Si 1.86801 * 120.00447 * 339.02924 * 8 6 5 11 11 H 1.48503 * 109.47071 * 95.06662 * 10 8 6 12 12 H 1.48500 * 109.47597 * 215.06974 * 10 8 6 13 13 H 1.48504 * 109.46976 * 335.06941 * 10 8 6 14 14 C 1.46926 * 118.74047 * 53.85745 * 5 4 2 15 15 C 1.53627 * 108.54254 * 306.10189 * 14 5 4 16 16 C 1.53039 * 109.24495 * 54.85077 * 15 14 5 17 17 H 1.09000 * 109.45912 * 178.49016 * 16 15 14 18 18 N 1.46501 * 109.45776 * 58.53144 * 16 15 14 19 19 C 1.34777 * 119.99966 * 84.93727 * 18 16 15 20 20 O 1.21571 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.47716 * 119.99965 * 179.97438 * 19 18 16 22 22 C 1.41497 * 126.51594 * 179.70852 * 21 19 18 23 23 C 1.35360 * 105.50148 * 179.89958 * 22 21 19 24 24 N 1.35037 * 107.23148 * 0.35999 * 23 22 21 25 25 C 1.46489 * 124.88665 * 179.76040 * 24 23 22 26 26 C 1.54272 * 110.03429 * 32.93248 * 25 24 23 27 27 C 1.54963 * 104.15963 * 217.13213 * 26 25 24 28 28 C 1.54890 * 102.77836 * 37.89040 * 27 26 25 29 29 C 1.53870 * 110.03706 * 275.71565 * 25 24 23 30 30 N 1.28472 * 110.22467 * 359.76063 * 24 23 22 31 31 H 1.08994 * 109.47349 * 180.08593 * 1 2 3 32 32 H 1.09005 * 109.46883 * 300.07957 * 1 2 3 33 33 H 1.08992 * 109.47139 * 60.07637 * 1 2 3 34 34 H 1.09004 * 109.58714 * 65.62638 * 4 2 1 35 35 H 1.09003 * 109.70515 * 305.27233 * 4 2 1 36 36 H 0.96999 * 119.99856 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.58155 * 65.93066 * 14 5 4 38 38 H 1.09000 * 109.59114 * 186.35704 * 14 5 4 39 39 H 1.09000 * 109.63007 * 294.86041 * 15 14 5 40 40 H 1.08996 * 109.45889 * 174.73726 * 15 14 5 41 41 H 0.96997 * 120.00293 * 264.93223 * 18 16 15 42 42 H 1.08005 * 127.24794 * 0.02562 * 22 21 19 43 43 H 1.08009 * 126.38662 * 180.08747 * 23 22 21 44 44 H 1.09007 * 110.01999 * 154.32162 * 25 24 23 45 45 H 1.08997 * 110.48307 * 335.78488 * 26 25 24 46 46 H 1.09007 * 110.48365 * 98.42718 * 26 25 24 47 47 H 1.08997 * 110.72079 * 279.57204 * 27 26 25 48 48 H 1.09000 * 110.91942 * 156.29627 * 27 26 25 49 49 H 1.08995 * 110.48709 * 203.40443 * 28 27 26 50 50 H 1.08996 * 110.60148 * 80.80945 * 28 27 26 51 51 H 1.09004 * 110.03585 * 238.57407 * 29 25 24 52 52 H 1.09001 * 110.03248 * 359.94871 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5045 -0.8292 -1.1696 6 6 4.2935 -0.3793 -2.1946 7 1 5.3038 -0.0539 -1.9955 8 6 3.7946 -0.3418 -3.4893 9 7 4.3488 0.4470 -4.3855 10 14 2.3320 -1.4050 -3.9580 11 1 1.0830 -0.6113 -3.8339 12 1 2.4863 -1.8692 -5.3601 13 1 2.2637 -2.5800 -3.0524 14 6 4.1051 -1.4318 0.0282 15 6 3.5709 -0.6950 1.2659 16 6 2.0409 -0.7231 1.2484 17 1 1.6583 -0.2245 2.1390 18 7 1.5784 -2.1130 1.2308 19 6 1.4503 -2.7952 2.3861 20 8 1.7189 -2.2572 3.4427 21 6 0.9834 -4.1966 2.3685 22 6 0.8054 -5.0389 3.4914 23 6 0.3663 -6.2183 2.9929 24 7 0.2966 -6.0843 1.6510 25 6 -0.1309 -7.1359 0.7251 26 6 -1.2014 -8.0242 1.3920 27 6 -0.8823 -9.4515 0.8798 28 6 0.6663 -9.4704 0.8607 29 6 1.0560 -8.0549 0.3870 30 7 0.6590 -4.9018 1.3034 31 1 -0.3634 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3633 0.5126 -0.8906 34 1 1.7637 -0.1580 -2.1389 35 1 1.6053 -1.7216 -1.3005 36 1 4.0004 0.4730 -5.2904 37 1 3.8339 -2.4862 0.0819 38 1 5.1896 -1.3332 -0.0176 39 1 3.9160 0.3388 1.2539 40 1 3.9335 -1.1891 2.1673 41 1 1.3644 -2.5424 0.3878 42 1 0.9809 -4.7921 4.5281 43 1 0.1220 -7.1032 3.5620 44 1 -0.5300 -6.6909 -0.1864 45 1 -1.1119 -7.9796 2.4774 46 1 -2.1997 -7.7196 1.0777 47 1 -1.2829 -9.6000 -0.1229 48 1 -1.2694 -10.2063 1.5644 49 1 1.0300 -10.2211 0.1591 50 1 1.0600 -9.6603 1.8592 51 1 1.2325 -8.0566 -0.6887 52 1 1.9503 -7.7180 0.9112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942086880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:55 Heat of formation + Delta-G solvation = 60.392664 kcal Electronic energy + Delta-G solvation = -31709.296307 eV Core-core repulsion = 27710.787011 eV Total energy + Delta-G solvation = -3998.509296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.83357 -39.79597 -38.49641 -37.61229 -34.29755 -32.76953 -32.25308 -31.82312 -30.90878 -30.10451 -29.31819 -28.12643 -26.16586 -25.29023 -23.71421 -22.60662 -22.26545 -21.13844 -20.87912 -20.26207 -19.91734 -18.74816 -18.11664 -17.14904 -16.75221 -16.35792 -15.64500 -15.50019 -15.09032 -15.00825 -14.62432 -14.24633 -14.10597 -13.93302 -13.56728 -13.53126 -13.36170 -13.19109 -13.06980 -12.68462 -12.59147 -12.16035 -12.10161 -11.86958 -11.74074 -11.71282 -11.46826 -11.37188 -11.30528 -11.14444 -11.11534 -10.93956 -10.63841 -10.46193 -10.18791 -10.00634 -9.82590 -9.65296 -9.43044 -9.33990 -9.13605 -8.63609 -8.58005 -6.94449 -5.93346 -3.27771 1.61325 2.07826 2.24166 3.31965 3.45908 3.48314 3.51101 3.60958 3.77656 3.94497 4.27973 4.48517 4.53986 4.56053 4.71457 4.80282 4.82598 4.89530 4.96946 5.01410 5.09353 5.19155 5.30977 5.34530 5.35562 5.41088 5.47611 5.51056 5.51445 5.61294 5.63934 5.68442 5.73396 5.76104 5.94652 5.98560 6.06111 6.11750 6.23947 6.32294 6.36952 6.46314 6.48424 6.65777 6.66442 6.71193 6.75560 6.84556 7.01731 7.69659 7.97382 7.98059 8.35004 8.47342 8.96273 9.74126 10.12277 11.22758 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.003361 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.330563 B = 8327.765219 C = 9815.880906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 H 0.089 0.911 4 C 0.133 3.867 5 N -0.605 5.605 6 C -0.256 4.256 7 H 0.086 0.914 8 C 0.022 3.978 9 N -0.908 5.908 10 Si 0.878 3.122 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.146 4.146 16 C 0.159 3.841 17 H 0.081 0.919 18 N -0.701 5.701 19 C 0.602 3.398 20 O -0.542 6.542 21 C -0.015 4.015 22 C -0.179 4.179 23 C -0.022 4.022 24 N -0.275 5.275 25 C 0.142 3.858 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.124 4.124 29 C -0.137 4.137 30 N -0.258 5.258 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.406 0.594 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 -19.203 13.527 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.328 5.328 6 C -0.385 4.385 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.552 5.552 10 Si 0.709 3.291 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.025 3.975 15 C -0.186 4.186 16 C 0.055 3.945 17 H 0.099 0.901 18 N -0.353 5.353 19 C 0.387 3.613 20 O -0.418 6.418 21 C -0.175 4.175 22 C -0.207 4.207 23 C -0.165 4.165 24 N -0.064 5.064 25 C 0.041 3.959 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.162 4.162 29 C -0.176 4.176 30 N -0.094 5.094 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.243 0.757 42 H 0.178 0.822 43 H 0.195 0.805 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.103 0.897 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.620 -18.745 12.838 25.989 hybrid contribution -0.860 -0.878 -0.036 1.230 sum -13.479 -19.623 12.802 27.031 Atomic orbital electron populations 1.21789 0.95598 1.01478 1.01417 1.21954 0.94889 1.01087 0.95965 0.89238 1.21339 0.85068 0.96785 0.96099 1.44374 1.00524 1.69972 1.17943 1.18942 0.98245 1.36024 0.85241 0.89622 1.25270 0.97908 0.98743 0.95703 1.69849 1.43358 1.37473 1.04470 0.86999 0.82787 0.82485 0.76837 1.21676 1.23247 1.19463 1.20973 0.97077 0.93978 0.85500 1.22453 0.94740 1.02093 0.99356 1.20946 0.94580 0.80505 0.98464 0.90132 1.46043 1.66262 1.14110 1.08852 1.16877 0.77247 0.83042 0.84174 1.90757 1.51479 1.68743 1.30781 1.22061 1.08645 0.96226 0.90553 1.21743 1.06549 0.92281 1.00156 1.22669 1.07809 1.01222 0.84775 1.45715 1.45924 1.08911 1.05801 1.22350 0.95632 0.85538 0.92364 1.22846 0.98141 0.94842 1.01523 1.22492 0.95940 0.95562 1.01974 1.22379 0.95661 0.96204 1.01953 1.22605 0.97414 0.94536 1.03020 1.73578 1.15838 0.92906 1.27031 0.93069 0.92903 0.92544 0.90762 0.96065 0.92844 0.96021 0.91954 0.90849 0.92053 0.75730 0.82181 0.80502 0.86987 0.89854 0.89964 0.90689 0.90539 0.90768 0.91160 0.89744 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.06 37.16 0.34 -1.88 16 2 C -0.12 -2.11 2.67 -90.50 -0.24 -2.35 16 3 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 4 C 0.13 2.87 3.18 -3.72 -0.01 2.86 16 5 N -0.60 -14.40 2.77 -172.06 -0.48 -14.87 16 6 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 7 H 0.09 2.57 8.05 -52.49 -0.42 2.14 16 8 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 9 N -0.91 -27.95 13.97 55.49 0.78 -27.17 16 10 Si 0.88 22.35 24.35 -169.99 -4.14 18.22 16 11 H -0.29 -7.09 6.70 56.52 0.38 -6.71 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.72 6.49 56.52 0.37 -6.36 16 14 C 0.15 3.11 6.28 -3.48 -0.02 3.08 16 15 C -0.15 -2.64 5.79 -26.39 -0.15 -2.79 16 16 C 0.16 2.74 2.21 -67.89 -0.15 2.59 16 17 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 18 N -0.70 -11.87 3.59 -54.75 -0.20 -12.06 16 19 C 0.60 10.35 7.79 -12.39 -0.10 10.25 16 20 O -0.54 -10.41 16.59 5.30 0.09 -10.32 16 21 C -0.01 -0.22 7.13 -82.77 -0.59 -0.81 16 22 C -0.18 -2.24 10.81 -39.37 -0.43 -2.66 16 23 C -0.02 -0.22 10.38 -17.17 -0.18 -0.40 16 24 N -0.28 -3.03 3.13 -53.74 -0.17 -3.20 16 25 C 0.14 1.12 3.87 -66.82 -0.26 0.86 16 26 C -0.14 -0.70 6.37 -25.03 -0.16 -0.86 16 27 C -0.12 -0.49 6.91 -24.70 -0.17 -0.66 16 28 C -0.12 -0.61 6.83 -25.07 -0.17 -0.79 16 29 C -0.14 -0.99 6.59 -25.62 -0.17 -1.16 16 30 N -0.26 -3.73 11.67 33.42 0.39 -3.34 16 31 H 0.05 0.77 7.53 -51.93 -0.39 0.38 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.77 4.49 -51.93 -0.23 1.54 16 35 H 0.02 0.46 5.51 -51.93 -0.29 0.18 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 38 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.41 7.04 6.46 -40.82 -0.26 6.78 16 42 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.18 1.05 6.84 -52.48 -0.36 0.69 16 44 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.08 0.39 5.86 -51.93 -0.30 0.09 16 46 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -33.51 397.48 -9.01 -42.52 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.57 Total: 5.73 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.70 Total: -1.48 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.32 Total: -60.65 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.51 -9.01 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942086880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.913 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds