Wall clock time and date at job start Wed Apr 1 2020 04:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52238 * 2 1 4 4 C 1.53187 * 109.49654 * 239.91714 * 2 1 3 5 5 N 1.46920 * 108.77974 * 185.41340 * 4 2 1 6 6 C 1.36944 * 120.63403 * 233.59302 * 5 4 2 7 7 H 1.07995 * 120.00273 * 153.23939 * 6 5 4 8 8 C 1.38809 * 119.99420 * 333.23274 * 6 5 4 9 9 N 1.31622 * 119.99743 * 158.75450 * 8 6 5 10 10 Si 1.86801 * 120.00447 * 339.02924 * 8 6 5 11 11 H 1.48503 * 109.47071 * 95.06662 * 10 8 6 12 12 H 1.48500 * 109.47597 * 215.06974 * 10 8 6 13 13 H 1.48504 * 109.46976 * 335.06941 * 10 8 6 14 14 C 1.46926 * 118.74047 * 53.85745 * 5 4 2 15 15 C 1.53627 * 108.54254 * 306.10189 * 14 5 4 16 16 C 1.53039 * 109.24495 * 54.85077 * 15 14 5 17 17 H 1.09000 * 109.45912 * 178.49016 * 16 15 14 18 18 N 1.46501 * 109.45776 * 58.53144 * 16 15 14 19 19 C 1.34777 * 119.99966 * 84.93727 * 18 16 15 20 20 O 1.21571 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.47716 * 119.99965 * 179.97438 * 19 18 16 22 22 C 1.41497 * 126.51594 * 179.70852 * 21 19 18 23 23 C 1.35360 * 105.50148 * 179.89958 * 22 21 19 24 24 N 1.35037 * 107.23148 * 0.35999 * 23 22 21 25 25 C 1.46489 * 124.88665 * 179.76040 * 24 23 22 26 26 C 1.54272 * 110.03429 * 32.93248 * 25 24 23 27 27 C 1.54963 * 104.15963 * 217.13213 * 26 25 24 28 28 C 1.54890 * 102.77836 * 37.89040 * 27 26 25 29 29 C 1.53870 * 110.03706 * 275.71565 * 25 24 23 30 30 N 1.28472 * 110.22467 * 359.76063 * 24 23 22 31 31 H 1.08994 * 109.47349 * 180.08593 * 1 2 3 32 32 H 1.09005 * 109.46883 * 300.07957 * 1 2 3 33 33 H 1.08992 * 109.47139 * 60.07637 * 1 2 3 34 34 H 1.09004 * 109.58714 * 65.62638 * 4 2 1 35 35 H 1.09003 * 109.70515 * 305.27233 * 4 2 1 36 36 H 0.96999 * 119.99856 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.58155 * 65.93066 * 14 5 4 38 38 H 1.09000 * 109.59114 * 186.35704 * 14 5 4 39 39 H 1.09000 * 109.63007 * 294.86041 * 15 14 5 40 40 H 1.08996 * 109.45889 * 174.73726 * 15 14 5 41 41 H 0.96997 * 120.00293 * 264.93223 * 18 16 15 42 42 H 1.08005 * 127.24794 * 0.02562 * 22 21 19 43 43 H 1.08009 * 126.38662 * 180.08747 * 23 22 21 44 44 H 1.09007 * 110.01999 * 154.32162 * 25 24 23 45 45 H 1.08997 * 110.48307 * 335.78488 * 26 25 24 46 46 H 1.09007 * 110.48365 * 98.42718 * 26 25 24 47 47 H 1.08997 * 110.72079 * 279.57204 * 27 26 25 48 48 H 1.09000 * 110.91942 * 156.29627 * 27 26 25 49 49 H 1.08995 * 110.48709 * 203.40443 * 28 27 26 50 50 H 1.08996 * 110.60148 * 80.80945 * 28 27 26 51 51 H 1.09004 * 110.03585 * 238.57407 * 29 25 24 52 52 H 1.09001 * 110.03248 * 359.94871 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5045 -0.8292 -1.1696 6 6 4.2935 -0.3793 -2.1946 7 1 5.3038 -0.0539 -1.9955 8 6 3.7946 -0.3418 -3.4893 9 7 4.3488 0.4470 -4.3855 10 14 2.3320 -1.4050 -3.9580 11 1 1.0830 -0.6113 -3.8339 12 1 2.4863 -1.8692 -5.3601 13 1 2.2637 -2.5800 -3.0524 14 6 4.1051 -1.4318 0.0282 15 6 3.5709 -0.6950 1.2659 16 6 2.0409 -0.7231 1.2484 17 1 1.6583 -0.2245 2.1390 18 7 1.5784 -2.1130 1.2308 19 6 1.4503 -2.7952 2.3861 20 8 1.7189 -2.2572 3.4427 21 6 0.9834 -4.1966 2.3685 22 6 0.8054 -5.0389 3.4914 23 6 0.3663 -6.2183 2.9929 24 7 0.2966 -6.0843 1.6510 25 6 -0.1309 -7.1359 0.7251 26 6 -1.2014 -8.0242 1.3920 27 6 -0.8823 -9.4515 0.8798 28 6 0.6663 -9.4704 0.8607 29 6 1.0560 -8.0549 0.3870 30 7 0.6590 -4.9018 1.3034 31 1 -0.3634 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3633 0.5126 -0.8906 34 1 1.7637 -0.1580 -2.1389 35 1 1.6053 -1.7216 -1.3005 36 1 4.0004 0.4730 -5.2904 37 1 3.8339 -2.4862 0.0819 38 1 5.1896 -1.3332 -0.0176 39 1 3.9160 0.3388 1.2539 40 1 3.9335 -1.1891 2.1673 41 1 1.3644 -2.5424 0.3878 42 1 0.9809 -4.7921 4.5281 43 1 0.1220 -7.1032 3.5620 44 1 -0.5300 -6.6909 -0.1864 45 1 -1.1119 -7.9796 2.4774 46 1 -2.1997 -7.7196 1.0777 47 1 -1.2829 -9.6000 -0.1229 48 1 -1.2694 -10.2063 1.5644 49 1 1.0300 -10.2211 0.1591 50 1 1.0600 -9.6603 1.8592 51 1 1.2325 -8.0566 -0.6887 52 1 1.9503 -7.7180 0.9112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942086880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:53 Heat of formation + Delta-G solvation = 39.592107 kcal Electronic energy + Delta-G solvation = -31710.198286 eV Core-core repulsion = 27710.787011 eV Total energy + Delta-G solvation = -3999.411275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.73472 -41.20522 -39.34250 -38.82876 -36.04478 -34.03778 -33.66508 -33.34406 -32.09497 -31.50922 -29.77385 -28.87588 -27.66215 -27.10851 -24.97750 -23.95498 -23.25894 -22.54946 -21.66249 -21.28603 -20.75564 -20.26316 -19.09115 -18.74265 -18.01855 -17.36269 -17.03579 -16.63850 -16.45952 -16.05354 -15.79755 -15.58746 -15.51313 -15.05869 -15.02887 -14.69841 -14.62982 -14.39859 -14.30412 -13.99920 -13.76792 -13.56434 -13.12875 -13.12067 -13.03271 -12.69004 -12.64561 -12.36231 -12.15552 -12.12938 -12.06231 -11.98524 -11.97195 -11.78545 -11.65796 -11.55462 -11.51344 -11.33858 -11.17496 -10.67434 -10.30454 -10.12070 -9.92650 -8.95595 -8.17716 -5.49043 0.53742 1.19283 1.27330 1.38981 1.46349 1.47881 2.20034 2.39549 2.39756 3.02416 3.20360 3.29914 3.47178 3.57049 3.68328 3.79183 3.88721 3.92915 4.00084 4.09703 4.23875 4.29153 4.35187 4.37621 4.40829 4.47518 4.50679 4.57600 4.62740 4.62762 4.73583 4.76457 4.81180 4.82917 4.86448 4.97808 4.98444 5.00445 5.03640 5.07649 5.17625 5.18167 5.20961 5.26131 5.32390 5.38086 5.39455 5.55171 5.84881 5.90226 6.11305 6.44476 6.88586 6.91227 7.17469 7.59658 8.00536 9.02152 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.003361 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.330563 B = 8327.765219 C = 9815.880906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 H 0.085 0.915 4 C 0.131 3.869 5 N -0.616 5.616 6 C -0.248 4.248 7 H 0.053 0.947 8 C -0.033 4.033 9 N -0.955 5.955 10 Si 0.942 3.058 11 H -0.273 1.273 12 H -0.311 1.311 13 H -0.262 1.262 14 C 0.152 3.848 15 C -0.136 4.136 16 C 0.165 3.835 17 H 0.090 0.910 18 N -0.699 5.699 19 C 0.603 3.397 20 O -0.567 6.567 21 C -0.045 4.045 22 C -0.197 4.197 23 C 0.000 4.000 24 N -0.269 5.269 25 C 0.132 3.868 26 C -0.128 4.128 27 C -0.115 4.115 28 C -0.120 4.120 29 C -0.137 4.137 30 N -0.284 5.284 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.405 0.595 42 H 0.168 0.832 43 H 0.221 0.779 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.480 -21.894 15.203 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.103 0.897 4 C 0.006 3.994 5 N -0.340 5.340 6 C -0.377 4.377 7 H 0.070 0.930 8 C -0.227 4.227 9 N -0.601 5.601 10 Si 0.771 3.229 11 H -0.199 1.199 12 H -0.240 1.240 13 H -0.186 1.186 14 C 0.027 3.973 15 C -0.176 4.176 16 C 0.061 3.939 17 H 0.108 0.892 18 N -0.350 5.350 19 C 0.389 3.611 20 O -0.445 6.445 21 C -0.204 4.204 22 C -0.225 4.225 23 C -0.142 4.142 24 N -0.057 5.057 25 C 0.032 3.968 26 C -0.167 4.167 27 C -0.152 4.152 28 C -0.157 4.157 29 C -0.175 4.175 30 N -0.121 5.121 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.241 0.759 42 H 0.185 0.815 43 H 0.238 0.762 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.098 0.902 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.371 -21.451 14.542 30.131 hybrid contribution 0.062 -0.105 -0.522 0.536 sum -15.309 -21.557 14.020 29.927 Atomic orbital electron populations 1.21744 0.93186 1.02110 1.02626 1.21821 0.96825 1.00195 0.94126 0.89710 1.21371 0.83605 0.97200 0.97178 1.44454 1.01395 1.70378 1.17731 1.18866 0.97514 1.34788 0.86546 0.92952 1.25860 1.01282 0.99913 0.95676 1.69972 1.45853 1.39401 1.04894 0.85973 0.80212 0.80850 0.75900 1.19914 1.23989 1.18649 1.21025 0.96674 0.94226 0.85415 1.22328 0.95584 1.01688 0.97984 1.20853 0.93694 0.80971 0.98407 0.89222 1.45992 1.66281 1.13853 1.08872 1.17147 0.76523 0.83815 0.83603 1.90728 1.52730 1.69609 1.31466 1.21929 1.10665 0.95746 0.92014 1.21974 1.07516 0.92895 1.00077 1.23246 1.05193 1.01577 0.84229 1.46080 1.44402 1.08324 1.06909 1.22709 0.96757 0.85136 0.92218 1.22871 0.97243 0.94654 1.01899 1.22486 0.94982 0.95139 1.02637 1.22373 0.96521 0.94495 1.02328 1.22589 0.96331 0.95983 1.02610 1.73508 1.16886 0.94382 1.27328 0.92719 0.90908 0.92168 0.92831 0.95397 0.92934 0.95793 0.92792 0.90827 0.91390 0.75917 0.81487 0.76208 0.87707 0.88779 0.89368 0.90379 0.88818 0.90216 0.90530 0.90164 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.06 71.98 0.65 -3.27 16 2 C -0.11 -3.74 2.67 -10.72 -0.03 -3.77 16 3 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 4 C 0.13 5.57 3.18 86.36 0.27 5.84 16 5 N -0.62 -29.48 2.77 -698.26 -1.94 -31.42 16 6 C -0.25 -14.26 10.04 84.03 0.84 -13.42 16 7 H 0.05 3.30 8.05 -2.91 -0.02 3.28 16 8 C -0.03 -1.92 5.23 84.86 0.44 -1.48 16 9 N -0.96 -60.50 13.97 21.65 0.30 -60.20 16 10 Si 0.94 46.78 24.35 68.60 1.67 48.45 16 11 H -0.27 -12.71 6.70 99.48 0.67 -12.04 16 12 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 13 H -0.26 -12.52 6.49 99.48 0.65 -11.87 16 14 C 0.15 6.28 6.28 86.51 0.54 6.83 16 15 C -0.14 -4.83 5.79 30.82 0.18 -4.65 16 16 C 0.16 5.48 2.21 45.02 0.10 5.58 16 17 H 0.09 2.90 7.58 -2.39 -0.02 2.88 16 18 N -0.70 -22.98 3.59 -445.40 -1.60 -24.58 16 19 C 0.60 20.31 7.79 86.75 0.68 20.99 16 20 O -0.57 -21.44 16.59 -3.94 -0.07 -21.51 16 21 C -0.05 -1.34 7.13 42.46 0.30 -1.03 16 22 C -0.20 -4.58 10.81 22.41 0.24 -4.34 16 23 C 0.00 0.00 10.38 83.53 0.87 0.87 16 24 N -0.27 -5.39 3.13 -323.95 -1.02 -6.40 16 25 C 0.13 1.81 3.87 45.72 0.18 1.98 16 26 C -0.13 -0.88 6.37 31.70 0.20 -0.68 16 27 C -0.11 -0.51 6.91 31.91 0.22 -0.29 16 28 C -0.12 -0.84 6.83 31.67 0.22 -0.62 16 29 C -0.14 -1.76 6.59 31.32 0.21 -1.55 16 30 N -0.28 -7.93 11.67 -48.18 -0.56 -8.50 16 31 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 32 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 2.50 4.49 -2.39 -0.01 2.49 16 35 H 0.03 1.16 5.51 -2.39 -0.01 1.15 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.02 0.99 7.74 -2.39 -0.02 0.97 16 38 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.40 13.64 6.46 -92.71 -0.60 13.04 16 42 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.22 1.55 6.84 -2.91 -0.02 1.53 16 44 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.09 0.46 5.86 -2.39 -0.01 0.44 16 46 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.06 0.97 7.92 -2.39 -0.02 0.96 16 Total: -1.00 -74.40 397.48 3.13 -71.27 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.22 Total: 25.89 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.12 Total: 7.00 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -4.81 Total: -131.10 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.07 Total: -21.51 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -74.40 3.13 -71.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942086880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.859 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds