Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49271 * 2 1 4 4 C 1.53192 * 109.52714 * 120.07414 * 2 1 3 5 5 N 1.46918 * 108.77794 * 174.60457 * 4 2 1 6 6 C 1.36935 * 120.63320 * 126.37121 * 5 4 2 7 7 H 1.07997 * 120.00589 * 207.70139 * 6 5 4 8 8 C 1.38811 * 119.99982 * 27.69830 * 6 5 4 9 9 N 1.31628 * 120.00128 * 17.35388 * 8 6 5 10 10 Si 1.86800 * 120.00378 * 197.35272 * 8 6 5 11 11 H 1.48500 * 109.47088 * 59.99836 * 10 8 6 12 12 H 1.48499 * 109.47288 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47093 * 299.99945 * 10 8 6 14 14 C 1.46934 * 118.73973 * 306.39664 * 5 4 2 15 15 C 1.53186 * 108.77423 * 53.60272 * 14 5 4 16 16 C 1.53034 * 109.31870 * 305.36752 * 15 14 5 17 17 H 1.08996 * 109.45839 * 301.34962 * 16 15 14 18 18 N 1.46495 * 109.46369 * 181.38458 * 16 15 14 19 19 C 1.34777 * 120.00014 * 84.99850 * 18 16 15 20 20 O 1.21575 * 119.99988 * 0.02562 * 19 18 16 21 21 C 1.47710 * 120.00201 * 180.02562 * 19 18 16 22 22 C 1.41502 * 126.51611 * 179.71474 * 21 19 18 23 23 C 1.35368 * 105.49859 * 179.90026 * 22 21 19 24 24 N 1.35030 * 107.23101 * 0.35491 * 23 22 21 25 25 C 1.46499 * 124.88400 * 179.76058 * 24 23 22 26 26 C 1.54262 * 110.03475 * 32.19811 * 25 24 23 27 27 C 1.54893 * 104.19678 * 217.10543 * 26 25 24 28 28 C 1.54893 * 102.74780 * 37.93562 * 27 26 25 29 29 C 1.53878 * 110.03512 * 275.02486 * 25 24 23 30 30 N 1.28466 * 110.23183 * 359.76414 * 24 23 22 31 31 H 1.08998 * 109.46526 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46810 * 300.06623 * 1 2 3 33 33 H 1.09001 * 109.47192 * 60.07120 * 1 2 3 34 34 H 1.09005 * 109.58745 * 294.39677 * 4 2 1 35 35 H 1.09003 * 109.58177 * 54.67472 * 4 2 1 36 36 H 0.96995 * 120.00288 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58025 * 293.82140 * 14 5 4 38 38 H 1.08996 * 109.58385 * 173.39814 * 14 5 4 39 39 H 1.09005 * 109.49687 * 65.32290 * 15 14 5 40 40 H 1.09004 * 109.49442 * 185.37738 * 15 14 5 41 41 H 0.96996 * 120.00106 * 265.00357 * 18 16 15 42 42 H 1.07997 * 127.25121 * 0.02562 * 22 21 19 43 43 H 1.08003 * 126.38207 * 180.15957 * 23 22 21 44 44 H 1.09004 * 110.01337 * 153.63737 * 25 24 23 45 45 H 1.09003 * 110.48329 * 335.77545 * 26 25 24 46 46 H 1.08992 * 110.49047 * 98.42654 * 26 25 24 47 47 H 1.08999 * 110.75351 * 279.62608 * 27 26 25 48 48 H 1.09000 * 110.91785 * 156.32579 * 27 26 25 49 49 H 1.08997 * 110.48891 * 203.37895 * 28 27 26 50 50 H 1.09001 * 110.59307 * 80.79764 * 28 27 26 51 51 H 1.08999 * 110.03315 * 238.57360 * 29 25 24 52 52 H 1.08997 * 110.02785 * 359.95650 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0421 -0.7235 1.2494 5 7 3.5053 -0.8281 1.1691 6 6 4.2944 -0.3771 2.1933 7 1 5.2993 -0.0369 1.9914 8 6 3.8026 -0.3571 3.4912 9 7 2.7397 -1.0680 3.8033 10 14 4.6493 0.6785 4.7951 11 1 4.6316 2.1050 4.3828 12 1 3.9349 0.5275 6.0882 13 1 6.0550 0.2257 4.9510 14 6 4.1060 -1.4253 -0.0315 15 6 3.5708 -0.6939 -1.2665 16 6 2.0409 -0.7228 -1.2485 17 1 1.6973 -1.7571 -1.2353 18 7 1.5259 -0.0529 -2.4452 19 6 1.3966 -0.7385 -3.5984 20 8 1.7069 -1.9130 -3.6452 21 6 0.8779 -0.0629 -4.8052 22 6 0.6922 -0.6447 -6.0816 23 6 0.1994 0.3454 -6.8622 24 7 0.1068 1.4519 -6.0938 25 6 -0.3785 2.7546 -6.5560 26 6 -1.4539 2.5620 -7.6451 27 6 -1.1931 3.7161 -8.6447 28 6 0.3531 3.8039 -8.6696 29 6 0.7704 3.5443 -7.2074 30 7 0.5054 1.1979 -4.8993 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5127 -0.8906 34 1 1.7644 -0.1578 2.1389 35 1 1.6045 -1.7206 1.2993 36 1 2.3962 -1.0543 4.7104 37 1 3.8387 -2.4806 -0.0874 38 1 5.1902 -1.3227 0.0128 39 1 3.9154 0.3402 -1.2547 40 1 3.9340 -1.1880 -2.1677 41 1 1.2781 0.8842 -2.4078 42 1 0.8980 -1.6645 -6.3714 43 1 -0.0667 0.2660 -7.9059 44 1 -0.7907 3.3177 -5.7186 45 1 -1.3307 1.5968 -8.1363 46 1 -2.4518 2.6478 -7.2153 47 1 -1.6271 4.6475 -8.2811 48 1 -1.5820 3.4703 -9.6329 49 1 0.6739 4.7959 -8.9875 50 1 0.7700 3.0405 -9.3266 51 1 0.9151 4.4909 -6.6867 52 1 1.6892 2.9585 -7.1789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942086882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = 52.038560 kcal Electronic energy + Delta-G solvation = -30741.332543 eV Core-core repulsion = 26742.460986 eV Total energy + Delta-G solvation = -3998.871557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.87353 -39.53276 -38.51156 -37.39836 -34.41428 -32.78629 -32.13958 -31.76582 -30.90481 -29.46211 -29.33752 -28.12271 -25.86923 -25.19963 -23.52579 -22.61312 -21.78933 -21.13410 -20.77715 -20.21760 -19.76847 -19.14027 -18.05300 -17.10812 -16.61017 -16.29167 -15.70974 -15.61697 -15.13147 -14.75156 -14.39424 -14.20825 -13.98044 -13.72725 -13.62193 -13.50020 -13.13247 -13.01338 -12.80172 -12.67082 -12.43372 -12.16187 -11.96080 -11.81487 -11.78082 -11.43675 -11.39912 -11.23057 -11.21962 -11.03024 -10.99068 -10.69977 -10.58737 -10.29317 -10.11765 -9.94593 -9.91415 -9.63490 -9.40573 -9.36849 -9.16433 -8.57136 -8.38632 -6.63390 -5.74734 -3.16224 1.57584 2.05635 2.18765 3.41092 3.46947 3.48067 3.48998 3.61147 3.71124 3.87376 4.20817 4.44107 4.51452 4.53449 4.64672 4.73451 4.76545 4.84379 4.94567 5.12483 5.23791 5.27084 5.33505 5.38852 5.42083 5.43493 5.53055 5.56006 5.58091 5.64923 5.66013 5.69558 5.78355 5.97167 6.18402 6.21382 6.30040 6.34399 6.45010 6.56387 6.60014 6.62041 6.68718 6.77437 6.86623 7.05006 7.06869 7.40112 7.65333 7.72176 7.83675 7.97556 8.49146 8.51235 9.25555 9.89039 10.46274 11.34021 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002127 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.656172 B =13162.647676 C =13650.347336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.599 3.401 20 O -0.537 6.537 21 C -0.012 4.012 22 C -0.179 4.179 23 C -0.023 4.023 24 N -0.277 5.277 25 C 0.143 3.857 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.136 4.136 30 N -0.262 5.262 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.401 0.599 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 10.274 -26.851 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.380 4.380 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.101 0.899 18 N -0.357 5.357 19 C 0.383 3.617 20 O -0.412 6.412 21 C -0.172 4.172 22 C -0.207 4.207 23 C -0.165 4.165 24 N -0.065 5.065 25 C 0.042 3.958 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.163 4.163 29 C -0.175 4.175 30 N -0.097 5.097 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.235 0.765 42 H 0.179 0.821 43 H 0.195 0.805 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.145 10.480 -26.074 29.876 hybrid contribution 0.324 0.296 0.184 0.476 sum -9.820 10.777 -25.890 29.713 Atomic orbital electron populations 1.21726 0.95920 1.01453 1.00606 1.22159 0.94711 1.00628 0.96742 0.91454 1.20801 0.83020 0.97106 0.93615 1.44093 1.01742 1.69390 1.16306 1.19146 0.97760 1.35308 0.85836 0.91709 1.25037 0.98602 0.99125 0.96954 1.70023 1.25694 1.40182 1.18831 0.86373 0.78933 0.80551 0.80936 1.21099 1.21678 1.20913 1.20882 0.96628 0.94324 0.86090 1.22397 0.94803 1.01355 0.99501 1.21094 0.93836 0.97210 0.82492 0.89895 1.46161 1.64880 1.14608 1.10004 1.16919 0.77702 0.85658 0.81462 1.90787 1.50764 1.15344 1.84280 1.22132 1.07860 0.90807 0.96442 1.21780 1.06011 1.00944 0.91991 1.22668 1.07445 0.86912 0.99471 1.45691 1.44928 1.09875 1.06000 1.22328 0.95015 0.79947 0.98481 1.22836 0.98190 1.00766 0.95653 1.22482 0.96050 0.98172 0.99277 1.22385 0.95655 1.02443 0.95780 1.22598 0.97793 1.00789 0.96312 1.73518 1.15530 1.17604 1.03055 0.93014 0.92660 0.93808 0.89010 0.96095 0.93592 0.96106 0.92569 0.92329 0.92599 0.76459 0.82144 0.80498 0.87031 0.89814 0.89930 0.90695 0.90515 0.90798 0.91142 0.89850 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.03 37.16 0.34 -1.98 16 2 C -0.12 -2.34 2.46 -90.50 -0.22 -2.56 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.18 4.35 4.60 -3.72 -0.02 4.33 16 5 N -0.59 -15.16 2.99 -172.32 -0.52 -15.67 16 6 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 7 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 9 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 10 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.15 3.29 6.52 -3.71 -0.02 3.26 16 15 C -0.14 -2.72 5.65 -26.62 -0.15 -2.87 16 16 C 0.16 2.93 1.88 -67.89 -0.13 2.80 16 17 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 18 N -0.71 -11.57 4.36 -54.76 -0.24 -11.81 16 19 C 0.60 10.28 7.79 -12.39 -0.10 10.19 16 20 O -0.54 -10.82 16.59 5.30 0.09 -10.73 16 21 C -0.01 -0.17 7.13 -82.76 -0.59 -0.77 16 22 C -0.18 -2.17 10.81 -39.36 -0.43 -2.60 16 23 C -0.02 -0.21 10.39 -17.17 -0.18 -0.38 16 24 N -0.28 -2.71 3.14 -53.74 -0.17 -2.88 16 25 C 0.14 0.92 3.88 -66.81 -0.26 0.66 16 26 C -0.14 -0.57 6.35 -25.07 -0.16 -0.73 16 27 C -0.12 -0.36 6.91 -24.73 -0.17 -0.53 16 28 C -0.12 -0.47 6.83 -25.07 -0.17 -0.64 16 29 C -0.14 -0.76 6.60 -25.61 -0.17 -0.93 16 30 N -0.26 -3.40 11.67 33.42 0.39 -3.01 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.65 7.36 -51.93 -0.38 0.27 16 34 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.40 5.96 8.03 -40.82 -0.33 5.63 16 42 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.18 0.95 6.80 -52.48 -0.36 0.59 16 44 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.33 5.83 -51.93 -0.30 0.03 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -32.89 407.87 -10.15 -43.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.79 Total: 3.71 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.66 Total: 0.09 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.09 Total: -59.10 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.89 -10.15 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942086882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.086 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds