Wall clock time and date at job start Wed Apr 1 2020 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49271 * 2 1 4 4 C 1.53192 * 109.52714 * 120.07414 * 2 1 3 5 5 N 1.46918 * 108.77794 * 174.60457 * 4 2 1 6 6 C 1.36935 * 120.63320 * 126.37121 * 5 4 2 7 7 H 1.07997 * 120.00589 * 207.70139 * 6 5 4 8 8 C 1.38811 * 119.99982 * 27.69830 * 6 5 4 9 9 N 1.31628 * 120.00128 * 17.35388 * 8 6 5 10 10 Si 1.86800 * 120.00378 * 197.35272 * 8 6 5 11 11 H 1.48500 * 109.47088 * 59.99836 * 10 8 6 12 12 H 1.48499 * 109.47288 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47093 * 299.99945 * 10 8 6 14 14 C 1.46934 * 118.73973 * 306.39664 * 5 4 2 15 15 C 1.53186 * 108.77423 * 53.60272 * 14 5 4 16 16 C 1.53034 * 109.31870 * 305.36752 * 15 14 5 17 17 H 1.08996 * 109.45839 * 301.34962 * 16 15 14 18 18 N 1.46495 * 109.46369 * 181.38458 * 16 15 14 19 19 C 1.34777 * 120.00014 * 84.99850 * 18 16 15 20 20 O 1.21575 * 119.99988 * 0.02562 * 19 18 16 21 21 C 1.47710 * 120.00201 * 180.02562 * 19 18 16 22 22 C 1.41502 * 126.51611 * 179.71474 * 21 19 18 23 23 C 1.35368 * 105.49859 * 179.90026 * 22 21 19 24 24 N 1.35030 * 107.23101 * 0.35491 * 23 22 21 25 25 C 1.46499 * 124.88400 * 179.76058 * 24 23 22 26 26 C 1.54262 * 110.03475 * 32.19811 * 25 24 23 27 27 C 1.54893 * 104.19678 * 217.10543 * 26 25 24 28 28 C 1.54893 * 102.74780 * 37.93562 * 27 26 25 29 29 C 1.53878 * 110.03512 * 275.02486 * 25 24 23 30 30 N 1.28466 * 110.23183 * 359.76414 * 24 23 22 31 31 H 1.08998 * 109.46526 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46810 * 300.06623 * 1 2 3 33 33 H 1.09001 * 109.47192 * 60.07120 * 1 2 3 34 34 H 1.09005 * 109.58745 * 294.39677 * 4 2 1 35 35 H 1.09003 * 109.58177 * 54.67472 * 4 2 1 36 36 H 0.96995 * 120.00288 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58025 * 293.82140 * 14 5 4 38 38 H 1.08996 * 109.58385 * 173.39814 * 14 5 4 39 39 H 1.09005 * 109.49687 * 65.32290 * 15 14 5 40 40 H 1.09004 * 109.49442 * 185.37738 * 15 14 5 41 41 H 0.96996 * 120.00106 * 265.00357 * 18 16 15 42 42 H 1.07997 * 127.25121 * 0.02562 * 22 21 19 43 43 H 1.08003 * 126.38207 * 180.15957 * 23 22 21 44 44 H 1.09004 * 110.01337 * 153.63737 * 25 24 23 45 45 H 1.09003 * 110.48329 * 335.77545 * 26 25 24 46 46 H 1.08992 * 110.49047 * 98.42654 * 26 25 24 47 47 H 1.08999 * 110.75351 * 279.62608 * 27 26 25 48 48 H 1.09000 * 110.91785 * 156.32579 * 27 26 25 49 49 H 1.08997 * 110.48891 * 203.37895 * 28 27 26 50 50 H 1.09001 * 110.59307 * 80.79764 * 28 27 26 51 51 H 1.08999 * 110.03315 * 238.57360 * 29 25 24 52 52 H 1.08997 * 110.02785 * 359.95650 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0421 -0.7235 1.2494 5 7 3.5053 -0.8281 1.1691 6 6 4.2944 -0.3771 2.1933 7 1 5.2993 -0.0369 1.9914 8 6 3.8026 -0.3571 3.4912 9 7 2.7397 -1.0680 3.8033 10 14 4.6493 0.6785 4.7951 11 1 4.6316 2.1050 4.3828 12 1 3.9349 0.5275 6.0882 13 1 6.0550 0.2257 4.9510 14 6 4.1060 -1.4253 -0.0315 15 6 3.5708 -0.6939 -1.2665 16 6 2.0409 -0.7228 -1.2485 17 1 1.6973 -1.7571 -1.2353 18 7 1.5259 -0.0529 -2.4452 19 6 1.3966 -0.7385 -3.5984 20 8 1.7069 -1.9130 -3.6452 21 6 0.8779 -0.0629 -4.8052 22 6 0.6922 -0.6447 -6.0816 23 6 0.1994 0.3454 -6.8622 24 7 0.1068 1.4519 -6.0938 25 6 -0.3785 2.7546 -6.5560 26 6 -1.4539 2.5620 -7.6451 27 6 -1.1931 3.7161 -8.6447 28 6 0.3531 3.8039 -8.6696 29 6 0.7704 3.5443 -7.2074 30 7 0.5054 1.1979 -4.8993 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5127 -0.8906 34 1 1.7644 -0.1578 2.1389 35 1 1.6045 -1.7206 1.2993 36 1 2.3962 -1.0543 4.7104 37 1 3.8387 -2.4806 -0.0874 38 1 5.1902 -1.3227 0.0128 39 1 3.9154 0.3402 -1.2547 40 1 3.9340 -1.1880 -2.1677 41 1 1.2781 0.8842 -2.4078 42 1 0.8980 -1.6645 -6.3714 43 1 -0.0667 0.2660 -7.9059 44 1 -0.7907 3.3177 -5.7186 45 1 -1.3307 1.5968 -8.1363 46 1 -2.4518 2.6478 -7.2153 47 1 -1.6271 4.6475 -8.2811 48 1 -1.5820 3.4703 -9.6329 49 1 0.6739 4.7959 -8.9875 50 1 0.7700 3.0405 -9.3266 51 1 0.9151 4.4909 -6.6867 52 1 1.6892 2.9585 -7.1789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942086882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:03 Heat of formation + Delta-G solvation = 32.711539 kcal Electronic energy + Delta-G solvation = -30742.170626 eV Core-core repulsion = 26742.460986 eV Total energy + Delta-G solvation = -3999.709639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.72644 -40.96287 -39.23434 -38.79758 -36.16101 -34.09033 -33.53776 -33.29254 -31.85205 -31.10631 -29.74326 -28.85515 -27.57312 -26.92781 -24.89093 -23.50227 -23.11951 -22.51546 -21.54730 -21.33191 -20.77109 -20.53095 -19.05070 -18.61246 -17.83577 -17.30228 -17.01592 -16.68457 -16.37594 -15.72733 -15.66124 -15.56115 -15.46300 -15.13973 -14.70696 -14.58333 -14.55905 -14.30072 -14.22373 -13.81541 -13.56050 -13.19890 -13.09636 -12.92579 -12.88708 -12.65751 -12.55702 -12.45545 -12.12621 -12.06834 -12.03599 -11.98088 -11.85298 -11.77293 -11.76049 -11.60695 -11.48529 -11.33641 -11.08659 -10.55170 -10.28541 -10.10640 -9.90123 -8.71563 -7.87406 -5.32894 0.53404 1.18877 1.46691 1.48264 1.50307 1.57518 2.17897 2.38551 2.51901 3.21055 3.27384 3.50210 3.57168 3.65123 3.75457 3.82637 3.89605 4.00694 4.13077 4.18362 4.31924 4.32721 4.38989 4.43538 4.49574 4.55508 4.63512 4.66910 4.71279 4.75168 4.77852 4.83343 4.85688 4.91873 4.98104 5.01222 5.06254 5.07107 5.12435 5.20822 5.23925 5.27687 5.30798 5.36079 5.42009 5.49064 5.51956 5.65078 5.72200 5.90652 6.38508 6.48325 6.92991 7.13972 7.19315 7.83306 8.36933 9.19535 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002127 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.656172 B =13162.647676 C =13650.347336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 H 0.071 0.929 4 C 0.189 3.811 5 N -0.610 5.610 6 C -0.265 4.265 7 H 0.067 0.933 8 C -0.050 4.050 9 N -0.934 5.934 10 Si 0.970 3.030 11 H -0.277 1.277 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.146 3.854 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.061 0.939 18 N -0.697 5.697 19 C 0.599 3.401 20 O -0.574 6.574 21 C -0.043 4.043 22 C -0.200 4.200 23 C 0.000 4.000 24 N -0.267 5.267 25 C 0.133 3.867 26 C -0.132 4.132 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.134 4.134 30 N -0.274 5.274 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.064 0.936 35 H -0.005 1.005 36 H 0.251 0.749 37 H 0.010 0.990 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.411 0.589 42 H 0.163 0.837 43 H 0.220 0.780 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 12.583 -29.521 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 H 0.089 0.911 4 C 0.063 3.937 5 N -0.333 5.333 6 C -0.395 4.395 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.797 3.203 11 H -0.203 1.203 12 H -0.220 1.220 13 H -0.202 1.202 14 C 0.019 3.981 15 C -0.166 4.166 16 C 0.064 3.936 17 H 0.079 0.921 18 N -0.347 5.347 19 C 0.385 3.615 20 O -0.452 6.452 21 C -0.202 4.202 22 C -0.229 4.229 23 C -0.142 4.142 24 N -0.055 5.055 25 C 0.033 3.967 26 C -0.170 4.170 27 C -0.153 4.153 28 C -0.159 4.159 29 C -0.173 4.173 30 N -0.111 5.111 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.013 0.987 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.247 0.753 42 H 0.180 0.820 43 H 0.237 0.763 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.105 0.895 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.026 12.823 -28.772 33.374 hybrid contribution 0.589 -0.402 0.918 1.162 sum -10.437 12.421 -27.854 32.234 Atomic orbital electron populations 1.21660 0.93728 1.01549 1.01989 1.21898 0.96438 0.99824 0.94599 0.91105 1.20596 0.82530 0.95737 0.94838 1.44355 1.02264 1.69847 1.16798 1.19475 0.98185 1.35155 0.86669 0.91511 1.25821 0.99507 1.00254 0.98942 1.70185 1.27207 1.41582 1.19004 0.85313 0.77929 0.79055 0.77964 1.20251 1.21954 1.20238 1.20960 0.96905 0.93951 0.86238 1.22205 0.95239 1.01124 0.98037 1.20738 0.93323 0.96198 0.83315 0.92081 1.45916 1.64722 1.14885 1.09180 1.17274 0.76856 0.85261 0.82109 1.90758 1.52448 1.16998 1.84979 1.21804 1.10282 0.91885 0.96183 1.21976 1.07272 1.01977 0.91628 1.23200 1.04887 0.85452 1.00699 1.46106 1.43143 1.11135 1.05149 1.22735 0.96075 0.78551 0.99311 1.22869 0.97438 1.01664 0.95019 1.22474 0.95307 0.97921 0.99589 1.22382 0.96307 1.02970 0.94241 1.22579 0.96540 1.00363 0.97781 1.73448 1.15987 1.16829 1.04832 0.93599 0.92197 0.91426 0.91731 0.98732 0.93982 0.97208 0.92180 0.91784 0.92078 0.75284 0.81981 0.76317 0.87084 0.89106 0.89396 0.90162 0.89179 0.90098 0.90870 0.89534 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.03 71.98 0.65 -3.68 16 2 C -0.11 -4.14 2.46 -10.72 -0.03 -4.17 16 3 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.19 9.41 4.60 86.36 0.40 9.81 16 5 N -0.61 -31.97 2.99 -699.10 -2.09 -34.07 16 6 C -0.26 -14.92 9.58 84.03 0.81 -14.12 16 7 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 8 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 9 N -0.93 -56.00 11.19 21.65 0.24 -55.76 16 10 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.15 6.64 6.52 86.36 0.56 7.20 16 15 C -0.13 -4.92 5.65 30.67 0.17 -4.75 16 16 C 0.17 6.38 1.88 45.02 0.08 6.46 16 17 H 0.06 2.62 7.57 -2.39 -0.02 2.60 16 18 N -0.70 -22.66 4.36 -445.42 -1.94 -24.61 16 19 C 0.60 20.71 7.79 86.75 0.68 21.39 16 20 O -0.57 -23.70 16.59 -3.95 -0.07 -23.77 16 21 C -0.04 -1.24 7.13 42.46 0.30 -0.93 16 22 C -0.20 -4.64 10.81 22.41 0.24 -4.39 16 23 C 0.00 0.01 10.39 83.54 0.87 0.87 16 24 N -0.27 -4.64 3.14 -323.94 -1.02 -5.66 16 25 C 0.13 1.37 3.88 45.72 0.18 1.55 16 26 C -0.13 -0.64 6.35 31.67 0.20 -0.43 16 27 C -0.12 -0.27 6.91 31.89 0.22 -0.05 16 28 C -0.12 -0.53 6.83 31.67 0.22 -0.32 16 29 C -0.13 -1.20 6.60 31.32 0.21 -0.99 16 30 N -0.27 -6.77 11.67 -48.17 -0.56 -7.34 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.91 7.36 -2.39 -0.02 1.89 16 34 H 0.06 3.56 6.04 -2.38 -0.01 3.55 16 35 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 39 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.41 11.82 8.03 -92.71 -0.74 11.07 16 42 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.22 1.37 6.80 -2.91 -0.02 1.35 16 44 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 0.33 5.83 -2.39 -0.01 0.31 16 46 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.06 0.76 7.92 -2.39 -0.02 0.74 16 Total: -1.00 -73.38 407.87 2.93 -70.45 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.17 Total: 22.31 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.17 Total: 11.04 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.37 Total: -127.43 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.07 Total: -23.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.38 2.93 -70.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942086882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.160 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds