Wall clock time and date at job start Wed Apr 1 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49847 * 2 1 4 4 C 1.53195 * 109.49675 * 120.09785 * 2 1 3 5 5 N 1.46926 * 108.77203 * 174.58432 * 4 2 1 6 6 C 1.36936 * 120.62811 * 126.41695 * 5 4 2 7 7 H 1.08010 * 119.99991 * 211.29165 * 6 5 4 8 8 C 1.38807 * 120.00599 * 31.28795 * 6 5 4 9 9 N 1.31623 * 119.99879 * 10.72278 * 8 6 5 10 10 Si 1.86797 * 120.00401 * 190.72615 * 8 6 5 11 11 H 1.48495 * 109.47493 * 59.99796 * 10 8 6 12 12 H 1.48501 * 109.47327 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46965 * 299.99630 * 10 8 6 14 14 C 1.46928 * 118.74106 * 306.38670 * 5 4 2 15 15 C 1.53167 * 108.76283 * 53.61413 * 14 5 4 16 16 C 1.53034 * 109.32862 * 305.35113 * 15 14 5 17 17 H 1.08994 * 109.46219 * 181.38758 * 16 15 14 18 18 N 1.46504 * 109.46108 * 301.36287 * 16 15 14 19 19 C 1.34770 * 119.99880 * 275.02657 * 18 16 15 20 20 O 1.21631 * 120.00277 * 4.77491 * 19 18 16 21 21 C 1.47172 * 119.99869 * 184.77785 * 19 18 16 22 22 C 1.38396 * 126.88148 * 354.60485 * 21 19 18 23 23 C 1.39681 * 105.35932 * 180.26272 * 22 21 19 24 24 N 1.30863 * 107.85950 * 0.02562 * 23 22 21 25 25 N 1.28450 * 110.92876 * 359.97438 * 24 23 22 26 26 C 1.46494 * 125.19056 * 180.02562 * 25 24 23 27 27 C 1.54260 * 110.03621 * 62.82747 * 26 25 24 28 28 C 1.54964 * 104.16107 * 217.13862 * 27 26 25 29 29 C 1.54892 * 102.77831 * 37.88447 * 28 27 26 30 30 C 1.53873 * 110.03143 * 305.60530 * 26 25 24 31 31 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46912 * 300.06383 * 1 2 3 33 33 H 1.09002 * 109.47009 * 60.06440 * 1 2 3 34 34 H 1.09000 * 109.58572 * 294.36832 * 4 2 1 35 35 H 1.09000 * 109.58902 * 54.65450 * 4 2 1 36 36 H 0.96996 * 120.00497 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.58763 * 173.39589 * 14 5 4 38 38 H 1.08996 * 109.58416 * 293.68171 * 14 5 4 39 39 H 1.09006 * 109.47406 * 185.40495 * 15 14 5 40 40 H 1.09001 * 109.50381 * 65.31787 * 15 14 5 41 41 H 0.97002 * 119.99620 * 95.02598 * 18 16 15 42 42 H 1.07996 * 127.32338 * 0.21978 * 22 21 19 43 43 H 1.07999 * 126.06972 * 179.97438 * 23 22 21 44 44 H 1.09009 * 110.01725 * 184.21791 * 26 25 24 45 45 H 1.09003 * 110.48475 * 335.77981 * 27 26 25 46 46 H 1.08997 * 110.49260 * 98.42692 * 27 26 25 47 47 H 1.09005 * 110.71973 * 279.56811 * 28 27 26 48 48 H 1.09007 * 110.92487 * 156.29700 * 28 27 26 49 49 H 1.09003 * 110.48300 * 203.40895 * 29 28 27 50 50 H 1.08995 * 110.59917 * 80.82277 * 29 28 27 51 51 H 1.09004 * 110.03402 * 238.56939 * 30 26 25 52 52 H 1.08994 * 110.03529 * 0.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8295 1.1693 6 6 4.2935 -0.3800 2.1943 7 1 5.2774 0.0140 1.9858 8 6 3.8290 -0.4306 3.5014 9 7 2.7296 -1.0969 3.7837 10 14 4.7641 0.4469 4.8596 11 1 4.8284 1.8994 4.5578 12 1 4.0666 0.2402 6.1542 13 1 6.1412 -0.1019 4.9469 14 6 4.1052 -1.4268 -0.0312 15 6 3.5708 -0.6947 -1.2659 16 6 2.0408 -0.7228 -1.2486 17 1 1.6583 -0.2238 -2.1389 18 7 1.5783 -2.1128 -1.2314 19 6 1.4496 -2.7945 -2.3868 20 8 1.7993 -2.2862 -3.4351 21 6 0.8859 -4.1540 -2.3803 22 6 0.5410 -4.9048 -1.2700 23 6 0.0614 -6.1151 -1.7763 24 7 0.1286 -6.0587 -3.0820 25 7 0.6042 -4.9299 -3.4687 26 6 0.8126 -4.5349 -4.8639 27 6 -0.5381 -4.4894 -5.6076 28 6 -0.2079 -5.0188 -7.0261 29 6 0.8224 -6.1399 -6.7421 30 6 1.6776 -5.5835 -5.5850 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7638 -0.1585 2.1389 35 1 1.6032 -1.7211 1.2989 36 1 2.4047 -1.1320 4.6970 37 1 5.1895 -1.3247 0.0133 38 1 3.8395 -2.4825 -0.0861 39 1 3.9336 -1.1893 -2.1670 40 1 3.9159 0.3391 -1.2537 41 1 1.3647 -2.5425 -0.3883 42 1 0.6255 -4.6166 -0.2327 43 1 -0.2998 -6.9495 -1.1936 44 1 1.2957 -3.5587 -4.9072 45 1 -1.2650 -5.1377 -5.1184 46 1 -0.9113 -3.4666 -5.6587 47 1 0.2353 -4.2327 -7.6376 48 1 -1.0979 -5.4247 -7.5071 49 1 1.4412 -6.3209 -7.6210 50 1 0.3175 -7.0564 -6.4369 51 1 2.5801 -5.1161 -5.9789 52 1 1.9420 -6.3865 -4.8970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942094719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:10 Heat of formation + Delta-G solvation = 50.508418 kcal Electronic energy + Delta-G solvation = -31951.178646 eV Core-core repulsion = 27952.240737 eV Total energy + Delta-G solvation = -3998.937909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.57307 -39.73899 -38.13246 -37.56941 -34.31499 -32.65895 -32.14485 -31.87365 -30.75601 -29.34102 -29.04512 -27.76432 -25.97153 -25.34500 -23.49131 -22.28829 -22.01211 -21.06692 -20.99795 -20.71905 -19.45485 -18.55085 -17.96893 -16.77750 -16.30534 -16.00872 -15.73253 -15.25590 -14.88247 -14.81395 -14.41480 -14.21602 -13.97553 -13.81118 -13.67573 -13.56697 -13.29250 -13.05354 -13.03436 -12.65660 -12.08553 -12.02769 -11.82435 -11.49775 -11.44853 -11.41325 -11.28151 -11.19251 -11.02699 -10.92796 -10.87279 -10.75425 -10.72139 -10.43332 -10.17158 -9.98877 -9.86798 -9.71014 -9.47249 -9.18072 -8.99002 -8.67855 -8.51345 -6.66396 -5.83460 -3.30962 1.33646 2.36988 2.65048 3.35336 3.35431 3.40873 3.41354 3.42201 4.17270 4.26917 4.44979 4.62601 4.69722 4.74990 5.07778 5.12767 5.17463 5.20152 5.26106 5.30114 5.30565 5.35327 5.40303 5.52548 5.54938 5.59352 5.62045 5.64025 5.74990 5.79901 5.81017 5.86974 5.98726 6.03549 6.05057 6.11798 6.17242 6.30324 6.43710 6.50430 6.51066 6.54633 6.62139 6.76030 6.79640 6.88848 6.96118 7.25883 7.58631 7.69387 7.75365 8.10638 8.32168 8.42953 9.17518 9.78537 10.36435 11.24557 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002648 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.715586 B =10571.189589 C =10845.099316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 H 0.080 0.920 4 C 0.179 3.821 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.063 0.937 8 C 0.005 3.995 9 N -0.905 5.905 10 Si 0.905 3.095 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.163 3.837 17 H 0.074 0.926 18 N -0.691 5.691 19 C 0.589 3.411 20 O -0.553 6.553 21 C -0.035 4.035 22 C -0.187 4.187 23 C -0.007 4.007 24 N -0.278 5.278 25 N -0.250 5.250 26 C 0.130 3.870 27 C -0.130 4.130 28 C -0.121 4.121 29 C -0.120 4.120 30 C -0.129 4.129 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.015 0.985 36 H 0.255 0.745 37 H 0.052 0.948 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -7.061 -16.503 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.053 3.947 5 N -0.314 5.314 6 C -0.382 4.382 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.550 5.550 10 Si 0.735 3.265 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.059 3.941 17 H 0.092 0.908 18 N -0.342 5.342 19 C 0.374 3.626 20 O -0.432 6.432 21 C -0.164 4.164 22 C -0.216 4.216 23 C -0.183 4.183 24 N -0.111 5.111 25 N -0.038 5.038 26 C 0.029 3.971 27 C -0.168 4.168 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.168 4.168 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.245 0.755 42 H 0.179 0.821 43 H 0.201 0.799 44 H 0.157 0.843 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.096 0.904 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.529 -7.264 -18.147 20.947 hybrid contribution 0.519 0.571 2.090 2.228 sum -7.010 -6.693 -16.057 18.755 Atomic orbital electron populations 1.21731 0.95824 1.01287 1.00920 1.22169 0.94779 1.00814 0.97174 0.90211 1.20803 0.83235 0.96532 0.94162 1.44007 1.01566 1.69486 1.16328 1.19130 0.99519 1.34334 0.85250 0.91888 1.25139 0.98097 0.98779 0.97323 1.69935 1.23535 1.42630 1.18875 0.86341 0.79339 0.79591 0.81275 1.20998 1.21610 1.20898 1.20867 0.96576 0.94091 0.86396 1.22386 0.94853 1.01808 0.99547 1.20972 0.94541 0.79838 0.98769 0.90809 1.45892 1.65799 1.14268 1.08245 1.16908 0.78066 0.83057 0.84533 1.90674 1.51623 1.69763 1.31188 1.21513 1.10512 0.96035 0.88311 1.22348 1.05437 0.95033 0.98819 1.23539 1.05319 0.99457 0.89973 1.73081 1.16907 1.05240 1.15840 1.45902 1.42433 1.08726 1.06726 1.22842 0.97983 1.01521 0.74730 1.22741 0.95926 1.02317 0.95848 1.22473 0.99298 0.98222 0.95889 1.22328 0.97309 0.98552 0.97593 1.22460 0.98289 0.98166 0.97835 0.93149 0.92483 0.93746 0.88921 0.96679 0.93522 0.92914 0.96521 0.92438 0.91322 0.75544 0.82143 0.79877 0.84257 0.90225 0.90677 0.90981 0.90948 0.91259 0.91093 0.90395 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 37.16 0.34 -1.74 16 2 C -0.13 -2.23 2.67 -90.50 -0.24 -2.47 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.18 3.85 4.24 -3.71 -0.02 3.84 16 5 N -0.59 -13.93 2.99 -172.33 -0.51 -14.45 16 6 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 7 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 8 C 0.01 0.14 5.05 -17.43 -0.09 0.05 16 9 N -0.91 -24.92 11.05 55.49 0.61 -24.30 16 10 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.15 3.01 6.25 -3.72 -0.02 2.99 16 15 C -0.15 -2.58 5.77 -26.63 -0.15 -2.73 16 16 C 0.16 2.70 2.18 -67.89 -0.15 2.55 16 17 H 0.07 1.22 7.65 -51.93 -0.40 0.82 16 18 N -0.69 -10.86 3.59 -54.92 -0.20 -11.06 16 19 C 0.59 9.43 7.75 -12.64 -0.10 9.33 16 20 O -0.55 -9.72 14.09 5.25 0.07 -9.65 16 21 C -0.04 -0.52 6.96 -82.06 -0.57 -1.09 16 22 C -0.19 -2.47 10.50 -38.98 -0.41 -2.88 16 23 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 24 N -0.28 -3.78 11.04 30.59 0.34 -3.44 16 25 N -0.25 -3.47 3.06 -49.62 -0.15 -3.62 16 26 C 0.13 1.57 3.60 -66.82 -0.24 1.32 16 27 C -0.13 -1.32 6.51 -25.03 -0.16 -1.48 16 28 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 29 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 30 C -0.13 -1.34 6.47 -25.61 -0.17 -1.51 16 31 H 0.05 0.73 7.53 -51.93 -0.39 0.34 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 2.30 6.10 -51.93 -0.32 1.98 16 35 H 0.02 0.34 6.65 -51.93 -0.35 -0.01 16 36 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 39 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.41 6.39 5.76 -40.82 -0.24 6.15 16 42 H 0.16 1.90 7.58 -52.49 -0.40 1.50 16 43 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.14 1.90 5.37 -51.92 -0.28 1.62 16 45 H 0.08 0.88 7.78 -51.93 -0.40 0.48 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 0.91 7.61 -51.93 -0.40 0.51 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -29.26 400.53 -10.10 -39.36 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.59 Total: 8.27 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.68 Total: -3.22 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.09 Total: -56.87 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.26 -10.10 -39.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.866 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds