Wall clock time and date at job start Wed Apr 1 2020 04:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49847 * 2 1 4 4 C 1.53195 * 109.49675 * 120.09785 * 2 1 3 5 5 N 1.46926 * 108.77203 * 174.58432 * 4 2 1 6 6 C 1.36936 * 120.62811 * 126.41695 * 5 4 2 7 7 H 1.08010 * 119.99991 * 211.29165 * 6 5 4 8 8 C 1.38807 * 120.00599 * 31.28795 * 6 5 4 9 9 N 1.31623 * 119.99879 * 10.72278 * 8 6 5 10 10 Si 1.86797 * 120.00401 * 190.72615 * 8 6 5 11 11 H 1.48495 * 109.47493 * 59.99796 * 10 8 6 12 12 H 1.48501 * 109.47327 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46965 * 299.99630 * 10 8 6 14 14 C 1.46928 * 118.74106 * 306.38670 * 5 4 2 15 15 C 1.53167 * 108.76283 * 53.61413 * 14 5 4 16 16 C 1.53034 * 109.32862 * 305.35113 * 15 14 5 17 17 H 1.08994 * 109.46219 * 181.38758 * 16 15 14 18 18 N 1.46504 * 109.46108 * 301.36287 * 16 15 14 19 19 C 1.34770 * 119.99880 * 275.02657 * 18 16 15 20 20 O 1.21631 * 120.00277 * 4.77491 * 19 18 16 21 21 C 1.47172 * 119.99869 * 184.77785 * 19 18 16 22 22 C 1.38396 * 126.88148 * 354.60485 * 21 19 18 23 23 C 1.39681 * 105.35932 * 180.26272 * 22 21 19 24 24 N 1.30863 * 107.85950 * 0.02562 * 23 22 21 25 25 N 1.28450 * 110.92876 * 359.97438 * 24 23 22 26 26 C 1.46494 * 125.19056 * 180.02562 * 25 24 23 27 27 C 1.54260 * 110.03621 * 62.82747 * 26 25 24 28 28 C 1.54964 * 104.16107 * 217.13862 * 27 26 25 29 29 C 1.54892 * 102.77831 * 37.88447 * 28 27 26 30 30 C 1.53873 * 110.03143 * 305.60530 * 26 25 24 31 31 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46912 * 300.06383 * 1 2 3 33 33 H 1.09002 * 109.47009 * 60.06440 * 1 2 3 34 34 H 1.09000 * 109.58572 * 294.36832 * 4 2 1 35 35 H 1.09000 * 109.58902 * 54.65450 * 4 2 1 36 36 H 0.96996 * 120.00497 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.58763 * 173.39589 * 14 5 4 38 38 H 1.08996 * 109.58416 * 293.68171 * 14 5 4 39 39 H 1.09006 * 109.47406 * 185.40495 * 15 14 5 40 40 H 1.09001 * 109.50381 * 65.31787 * 15 14 5 41 41 H 0.97002 * 119.99620 * 95.02598 * 18 16 15 42 42 H 1.07996 * 127.32338 * 0.21978 * 22 21 19 43 43 H 1.07999 * 126.06972 * 179.97438 * 23 22 21 44 44 H 1.09009 * 110.01725 * 184.21791 * 26 25 24 45 45 H 1.09003 * 110.48475 * 335.77981 * 27 26 25 46 46 H 1.08997 * 110.49260 * 98.42692 * 27 26 25 47 47 H 1.09005 * 110.71973 * 279.56811 * 28 27 26 48 48 H 1.09007 * 110.92487 * 156.29700 * 28 27 26 49 49 H 1.09003 * 110.48300 * 203.40895 * 29 28 27 50 50 H 1.08995 * 110.59917 * 80.82277 * 29 28 27 51 51 H 1.09004 * 110.03402 * 238.56939 * 30 26 25 52 52 H 1.08994 * 110.03529 * 0.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8295 1.1693 6 6 4.2935 -0.3800 2.1943 7 1 5.2774 0.0140 1.9858 8 6 3.8290 -0.4306 3.5014 9 7 2.7296 -1.0969 3.7837 10 14 4.7641 0.4469 4.8596 11 1 4.8284 1.8994 4.5578 12 1 4.0666 0.2402 6.1542 13 1 6.1412 -0.1019 4.9469 14 6 4.1052 -1.4268 -0.0312 15 6 3.5708 -0.6947 -1.2659 16 6 2.0408 -0.7228 -1.2486 17 1 1.6583 -0.2238 -2.1389 18 7 1.5783 -2.1128 -1.2314 19 6 1.4496 -2.7945 -2.3868 20 8 1.7993 -2.2862 -3.4351 21 6 0.8859 -4.1540 -2.3803 22 6 0.5410 -4.9048 -1.2700 23 6 0.0614 -6.1151 -1.7763 24 7 0.1286 -6.0587 -3.0820 25 7 0.6042 -4.9299 -3.4687 26 6 0.8126 -4.5349 -4.8639 27 6 -0.5381 -4.4894 -5.6076 28 6 -0.2079 -5.0188 -7.0261 29 6 0.8224 -6.1399 -6.7421 30 6 1.6776 -5.5835 -5.5850 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7638 -0.1585 2.1389 35 1 1.6032 -1.7211 1.2989 36 1 2.4047 -1.1320 4.6970 37 1 5.1895 -1.3247 0.0133 38 1 3.8395 -2.4825 -0.0861 39 1 3.9336 -1.1893 -2.1670 40 1 3.9159 0.3391 -1.2537 41 1 1.3647 -2.5425 -0.3883 42 1 0.6255 -4.6166 -0.2327 43 1 -0.2998 -6.9495 -1.1936 44 1 1.2957 -3.5587 -4.9072 45 1 -1.2650 -5.1377 -5.1184 46 1 -0.9113 -3.4666 -5.6587 47 1 0.2353 -4.2327 -7.6376 48 1 -1.0979 -5.4247 -7.5071 49 1 1.4412 -6.3209 -7.6210 50 1 0.3175 -7.0564 -6.4369 51 1 2.5801 -5.1161 -5.9789 52 1 1.9420 -6.3865 -4.8970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942094719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:09 Heat of formation + Delta-G solvation = 35.879734 kcal Electronic energy + Delta-G solvation = -31951.812993 eV Core-core repulsion = 27952.240737 eV Total energy + Delta-G solvation = -3999.572256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.60468 -41.10247 -39.08533 -38.88966 -35.96953 -34.01668 -33.51506 -33.17388 -32.11285 -30.86094 -29.80993 -28.61375 -27.51001 -27.07890 -24.79446 -23.63180 -23.19709 -22.58202 -21.89592 -21.68238 -20.56077 -20.03584 -19.07800 -18.61613 -17.40557 -17.04949 -16.80098 -16.62329 -16.41143 -16.03294 -15.73235 -15.44193 -15.38276 -15.21090 -14.88875 -14.65476 -14.54680 -14.37401 -14.25164 -14.09585 -13.58165 -13.07873 -12.91104 -12.88228 -12.76941 -12.66673 -12.54932 -12.47921 -12.22523 -12.16289 -12.10361 -12.03220 -11.80839 -11.77688 -11.67808 -11.54689 -11.46974 -11.13450 -10.95180 -10.53025 -10.31798 -10.01438 -9.92927 -8.58534 -7.84349 -5.34189 0.20968 1.34802 1.49454 1.50170 1.56716 1.64512 2.15378 2.20840 2.52416 3.31235 3.34075 3.48900 3.51750 3.69957 3.79769 3.84567 3.92492 4.04615 4.13762 4.19008 4.30542 4.35419 4.38105 4.40094 4.46697 4.59292 4.62143 4.66926 4.68794 4.75631 4.76671 4.84413 4.86437 4.93956 4.97883 5.03186 5.07176 5.10465 5.12651 5.14506 5.18046 5.31260 5.36835 5.37642 5.49639 5.55746 5.59605 5.67474 5.80033 5.81158 6.41649 6.44676 7.01532 7.10964 7.19619 7.87599 8.40151 9.20423 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002648 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.715586 B =10571.189589 C =10845.099316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.607 5.607 6 C -0.265 4.265 7 H 0.060 0.940 8 C -0.042 4.042 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.149 3.851 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.084 0.916 18 N -0.688 5.688 19 C 0.592 3.408 20 O -0.570 6.570 21 C -0.060 4.060 22 C -0.186 4.186 23 C -0.007 4.007 24 N -0.286 5.286 25 N -0.252 5.252 26 C 0.121 3.879 27 C -0.126 4.126 28 C -0.114 4.114 29 C -0.114 4.114 30 C -0.127 4.127 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.007 0.993 36 H 0.251 0.749 37 H 0.046 0.954 38 H 0.012 0.988 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.407 0.593 42 H 0.171 0.829 43 H 0.215 0.785 44 H 0.122 0.878 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -7.394 -17.838 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.093 0.907 4 C 0.063 3.937 5 N -0.330 5.330 6 C -0.395 4.395 7 H 0.077 0.923 8 C -0.238 4.238 9 N -0.574 5.574 10 Si 0.792 3.208 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.023 3.977 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.102 0.898 18 N -0.339 5.339 19 C 0.378 3.622 20 O -0.451 6.451 21 C -0.188 4.188 22 C -0.215 4.215 23 C -0.182 4.182 24 N -0.119 5.119 25 N -0.040 5.040 26 C 0.021 3.979 27 C -0.165 4.165 28 C -0.151 4.151 29 C -0.152 4.152 30 C -0.165 4.165 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.245 0.755 42 H 0.189 0.811 43 H 0.232 0.768 44 H 0.140 0.860 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.155 -7.599 -19.508 22.468 hybrid contribution 0.743 0.626 2.497 2.679 sum -7.412 -6.973 -17.012 19.823 Atomic orbital electron populations 1.21669 0.93633 1.01896 1.01874 1.21960 0.96506 0.99857 0.95299 0.90711 1.20615 0.82356 0.95995 0.94765 1.44224 1.02268 1.69909 1.16609 1.19390 0.99771 1.34089 0.86257 0.92254 1.25786 0.99063 0.99765 0.99164 1.70077 1.24669 1.43820 1.18822 0.85411 0.78131 0.78665 0.78587 1.20519 1.21919 1.20604 1.20890 0.96242 0.94030 0.86497 1.22247 0.95662 1.01485 0.98053 1.20849 0.93670 0.80376 0.98527 0.89846 1.45801 1.65830 1.13926 1.08307 1.17034 0.77596 0.83450 0.84098 1.90666 1.52425 1.70343 1.31710 1.21490 1.12013 0.95918 0.89381 1.22578 1.04749 0.95173 0.99004 1.24094 1.04472 0.99970 0.89691 1.73085 1.17032 1.05153 1.16581 1.46093 1.42242 1.08617 1.07099 1.22980 0.99290 1.01181 0.74456 1.22717 0.94554 1.02197 0.96986 1.22481 0.99880 0.98272 0.94516 1.22315 0.97229 0.98363 0.97289 1.22457 0.98682 0.97241 0.98146 0.92735 0.92554 0.91745 0.92308 0.97464 0.94014 0.93538 0.96977 0.91909 0.91085 0.75506 0.81149 0.76799 0.85989 0.91238 0.90763 0.89981 0.89385 0.89415 0.91351 0.89912 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.05 71.98 0.65 -3.11 16 2 C -0.12 -3.93 2.67 -10.71 -0.03 -3.96 16 3 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.19 8.20 4.24 86.36 0.37 8.56 16 5 N -0.61 -28.88 2.99 -699.13 -2.09 -30.97 16 6 C -0.26 -14.09 9.58 84.03 0.81 -13.29 16 7 H 0.06 3.14 7.85 -2.91 -0.02 3.11 16 8 C -0.04 -2.24 5.05 84.86 0.43 -1.81 16 9 N -0.93 -51.91 11.05 21.65 0.24 -51.68 16 10 Si 0.96 43.68 29.57 68.60 2.03 45.71 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 C 0.15 6.12 6.25 86.35 0.54 6.66 16 15 C -0.13 -4.65 5.77 30.66 0.18 -4.47 16 16 C 0.17 5.46 2.18 45.02 0.10 5.55 16 17 H 0.08 2.60 7.65 -2.39 -0.02 2.58 16 18 N -0.69 -21.17 3.59 -445.92 -1.60 -22.77 16 19 C 0.59 18.64 7.75 86.59 0.67 19.31 16 20 O -0.57 -19.80 14.09 -4.13 -0.06 -19.86 16 21 C -0.06 -1.74 6.96 40.79 0.28 -1.45 16 22 C -0.19 -4.73 10.50 22.66 0.24 -4.49 16 23 C -0.01 -0.17 12.03 85.19 1.02 0.86 16 24 N -0.29 -7.48 11.04 -57.13 -0.63 -8.11 16 25 N -0.25 -6.88 3.06 -310.89 -0.95 -7.83 16 26 C 0.12 2.87 3.60 45.71 0.16 3.03 16 27 C -0.13 -2.44 6.51 31.69 0.21 -2.23 16 28 C -0.11 -1.56 6.91 31.91 0.22 -1.34 16 29 C -0.11 -1.67 6.83 31.67 0.22 -1.46 16 30 C -0.13 -2.53 6.47 31.32 0.20 -2.33 16 31 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 2.98 6.10 -2.39 -0.01 2.96 16 35 H 0.01 0.33 6.65 -2.39 -0.02 0.31 16 36 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 37 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 38 H 0.01 0.51 7.74 -2.39 -0.02 0.50 16 39 H 0.06 2.12 8.12 -2.38 -0.02 2.10 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.41 12.61 5.76 -92.71 -0.53 12.08 16 42 H 0.17 3.88 7.58 -2.91 -0.02 3.86 16 43 H 0.22 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.12 3.33 5.37 -2.38 -0.01 3.32 16 45 H 0.07 1.48 7.78 -2.39 -0.02 1.47 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 52 H 0.06 1.42 7.61 -2.39 -0.02 1.40 16 Total: -1.00 -62.77 400.53 3.58 -59.18 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.38 Total: 32.30 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.27 Total: 4.03 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.03 Total: -121.35 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -62.77 3.58 -59.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.061 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds