Wall clock time and date at job start Wed Apr 1 2020 04:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.49490 * 2 1 4 4 C 1.53188 * 109.49679 * 239.93594 * 2 1 3 5 5 N 1.46927 * 108.77733 * 185.41187 * 4 2 1 6 6 C 1.36935 * 120.63084 * 233.58807 * 5 4 2 7 7 H 1.08000 * 120.00283 * 147.73120 * 6 5 4 8 8 C 1.38812 * 120.00028 * 327.72948 * 6 5 4 9 9 N 1.31619 * 120.00092 * 167.75069 * 8 6 5 10 10 Si 1.86795 * 120.00045 * 347.75159 * 8 6 5 11 11 H 1.48497 * 109.47360 * 85.97554 * 10 8 6 12 12 H 1.48505 * 109.47617 * 205.97561 * 10 8 6 13 13 H 1.48497 * 109.47393 * 325.97567 * 10 8 6 14 14 C 1.46920 * 118.73581 * 53.60866 * 5 4 2 15 15 C 1.53191 * 108.77731 * 306.38894 * 14 5 4 16 16 C 1.53036 * 109.50067 * 120.06564 * 2 1 3 17 17 H 1.08998 * 109.46356 * 61.29506 * 16 2 1 18 18 N 1.46509 * 109.45880 * 301.33676 * 16 2 1 19 19 C 1.34774 * 120.00022 * 154.99930 * 18 16 2 20 20 O 1.21635 * 119.99714 * 5.24142 * 19 18 16 21 21 C 1.47158 * 119.99998 * 185.24238 * 19 18 16 22 22 C 1.38401 * 126.88608 * 5.18364 * 21 19 18 23 23 C 1.39671 * 105.35837 * 180.02562 * 22 21 19 24 24 N 1.30859 * 107.86762 * 359.97438 * 23 22 21 25 25 N 1.28450 * 110.92300 * 359.72026 * 24 23 22 26 26 C 1.46502 * 125.18870 * 180.28339 * 25 24 23 27 27 C 1.54266 * 110.03568 * 52.31154 * 26 25 24 28 28 C 1.54964 * 104.16146 * 217.13537 * 27 26 25 29 29 C 1.54891 * 102.77408 * 37.88980 * 28 27 26 30 30 C 1.53868 * 110.03072 * 295.09143 * 26 25 24 31 31 H 1.09001 * 109.46678 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47200 * 60.00114 * 1 2 3 33 33 H 1.08999 * 109.47142 * 299.99695 * 1 2 3 34 34 H 1.08998 * 109.59035 * 305.20201 * 4 2 1 35 35 H 1.09007 * 109.58664 * 65.47883 * 4 2 1 36 36 H 0.97003 * 120.00287 * 179.97438 * 9 8 6 37 37 H 1.08991 * 109.59142 * 66.18397 * 14 5 4 38 38 H 1.09004 * 109.58324 * 186.60687 * 14 5 4 39 39 H 1.08998 * 109.49950 * 174.58599 * 15 14 5 40 40 H 1.09002 * 109.50341 * 294.65508 * 15 14 5 41 41 H 0.96997 * 119.99942 * 335.00171 * 18 16 2 42 42 H 1.08003 * 127.31915 * 359.97097 * 22 21 19 43 43 H 1.08005 * 126.06460 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.01453 * 173.70590 * 26 25 24 45 45 H 1.09001 * 110.48689 * 335.78756 * 27 26 25 46 46 H 1.09001 * 110.48096 * 98.42607 * 27 26 25 47 47 H 1.08999 * 110.72066 * 279.57584 * 28 27 26 48 48 H 1.08997 * 110.92259 * 156.29618 * 28 27 26 49 49 H 1.08999 * 110.48148 * 203.40598 * 29 28 27 50 50 H 1.08997 * 110.60501 * 80.81709 * 29 28 27 51 51 H 1.08998 * 110.03489 * 238.57169 * 30 26 25 52 52 H 1.09001 * 110.03537 * 359.95780 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8288 -1.1699 6 6 4.2935 -0.3786 -2.1946 7 1 5.2710 0.0298 -1.9844 8 6 3.8369 -0.4473 -3.5037 9 7 4.4761 0.1953 -4.4582 10 14 2.3154 -1.4515 -3.9108 11 1 1.1030 -0.6193 -3.7038 12 1 2.3773 -1.8920 -5.3276 13 1 2.2560 -2.6415 -3.0246 14 6 4.1053 -1.4267 0.0302 15 6 3.5709 -0.6953 1.2657 16 6 2.0409 -0.7227 1.2485 17 1 1.6968 -1.7569 1.2358 18 7 1.5266 -0.0522 2.4453 19 6 1.3986 -0.7372 3.5990 20 8 1.7982 -1.8836 3.6731 21 6 0.7754 -0.0980 4.7689 22 6 0.1854 1.1530 4.8160 23 6 -0.2540 1.3054 6.1330 24 7 0.0622 0.2187 6.7900 25 7 0.6579 -0.6232 6.0244 26 6 1.1417 -1.9433 6.4362 27 6 0.0075 -2.7310 7.1238 28 6 0.7202 -3.5088 8.2589 29 6 1.7762 -2.4925 8.7598 30 6 2.2661 -1.7920 7.4756 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.6053 -1.7212 -1.2986 35 1 1.7615 -0.1586 -2.1391 36 1 4.1573 0.1470 -5.3730 37 1 3.8376 -2.4817 0.0860 38 1 5.1896 -1.3245 -0.0143 39 1 3.9335 -1.1903 2.1666 40 1 3.9164 0.3384 1.2544 41 1 1.2782 0.8846 2.4074 42 1 0.0866 1.8613 4.0067 43 1 -0.7643 2.1671 6.5374 44 1 1.5064 -2.4941 5.5692 45 1 -0.7350 -2.0483 7.5371 46 1 -0.4578 -3.4219 6.4206 47 1 1.2016 -4.4055 7.8687 48 1 0.0207 -3.7632 9.0552 49 1 2.6007 -3.0098 9.2504 50 1 1.3221 -1.7706 9.4386 51 1 3.1762 -2.2701 7.1135 52 1 2.4524 -0.7363 7.6732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942094721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:20 Heat of formation + Delta-G solvation = 55.086187 kcal Electronic energy + Delta-G solvation = -31522.194469 eV Core-core repulsion = 27523.455067 eV Total energy + Delta-G solvation = -3998.739402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.78032 -39.84578 -38.25146 -37.88833 -34.83198 -32.84204 -32.36924 -32.02093 -31.17837 -29.81799 -29.14740 -27.91272 -26.31544 -25.33897 -23.49153 -22.50221 -22.33780 -21.13317 -20.98185 -20.65128 -20.04347 -19.32528 -18.04864 -16.83882 -16.51131 -16.27074 -15.96646 -15.76573 -15.14492 -14.80812 -14.55309 -14.41026 -14.34427 -14.08338 -13.77680 -13.69601 -13.38445 -13.26402 -13.22706 -12.66290 -12.41596 -12.15992 -11.99522 -11.95953 -11.71219 -11.54831 -11.51305 -11.49072 -11.31743 -10.99942 -10.94154 -10.89691 -10.74221 -10.54795 -10.34241 -10.10330 -9.96088 -9.69186 -9.52632 -9.38595 -9.20718 -8.89278 -8.66310 -6.95505 -5.96592 -3.40958 1.11750 2.17326 2.44003 3.12611 3.14209 3.26284 3.44810 3.47073 4.05012 4.15815 4.44573 4.48363 4.49662 4.59189 4.89308 4.90928 4.95841 5.00823 5.04395 5.10987 5.15285 5.22463 5.25696 5.30175 5.39015 5.42466 5.45085 5.51375 5.53617 5.63340 5.66732 5.77093 5.81677 5.82982 5.87316 5.95192 5.98412 6.05992 6.07739 6.23031 6.30485 6.33245 6.34876 6.55096 6.59727 6.60309 6.65046 6.66892 6.87808 7.41565 7.90246 7.97814 8.07971 8.32073 8.90623 9.67810 10.06630 11.19464 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002520 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.658845 B =11107.040867 C =11587.772269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.130 3.870 5 N -0.608 5.608 6 C -0.261 4.261 7 H 0.085 0.915 8 C 0.024 3.976 9 N -0.913 5.913 10 Si 0.892 3.108 11 H -0.286 1.286 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.159 3.841 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.589 3.411 20 O -0.542 6.542 21 C -0.036 4.036 22 C -0.192 4.192 23 C -0.008 4.008 24 N -0.276 5.276 25 N -0.247 5.247 26 C 0.128 3.872 27 C -0.130 4.130 28 C -0.121 4.121 29 C -0.120 4.120 30 C -0.130 4.130 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.401 0.599 42 H 0.159 0.841 43 H 0.184 0.816 44 H 0.140 0.860 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 -1.106 24.340 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 H 0.098 0.902 4 C 0.003 3.997 5 N -0.331 5.331 6 C -0.389 4.389 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.723 3.277 11 H -0.214 1.214 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.025 3.975 15 C -0.183 4.183 16 C 0.056 3.944 17 H 0.103 0.897 18 N -0.352 5.352 19 C 0.374 3.626 20 O -0.420 6.420 21 C -0.164 4.164 22 C -0.221 4.221 23 C -0.183 4.183 24 N -0.108 5.108 25 N -0.035 5.035 26 C 0.028 3.972 27 C -0.168 4.168 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.168 4.168 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.235 0.765 42 H 0.177 0.823 43 H 0.201 0.799 44 H 0.158 0.842 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.119 -2.553 25.255 27.327 hybrid contribution -1.002 0.590 -1.186 1.661 sum -11.122 -1.963 24.069 26.587 Atomic orbital electron populations 1.21810 0.95516 1.01733 1.01348 1.21991 0.94901 1.01092 0.95604 0.90240 1.21499 0.85228 0.97293 0.95639 1.44372 1.00467 1.70074 1.18171 1.18921 1.00961 1.34691 0.84335 0.89713 1.25407 0.98093 0.98504 0.95514 1.69758 1.41345 1.43583 1.00955 0.86892 0.82885 0.81568 0.76330 1.21363 1.23260 1.19542 1.20906 0.97428 0.94125 0.85039 1.22411 0.94267 1.01946 0.99679 1.21096 0.94274 0.97004 0.82008 0.89728 1.45956 1.65144 1.14452 1.09691 1.16932 0.78371 0.85418 0.81863 1.90723 1.50207 1.17756 1.83337 1.21530 1.09507 0.96520 0.88868 1.22257 1.04553 0.96141 0.99135 1.23543 1.05006 0.97584 0.92180 1.73105 1.13092 1.01210 1.23427 1.45969 1.38911 1.13783 1.04845 1.22890 0.95126 0.77935 1.01238 1.22727 0.97237 0.98906 0.97924 1.22473 0.97875 0.98022 0.97537 1.22330 0.98668 0.98017 0.96787 1.22490 0.97394 1.02206 0.94757 0.92894 0.92359 0.93063 0.95372 0.90287 0.92687 0.95650 0.91472 0.92029 0.91741 0.76453 0.82342 0.79867 0.84236 0.89840 0.90655 0.90901 0.90843 0.91140 0.91122 0.90185 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.03 37.16 0.34 -1.63 16 2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.07 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.13 2.69 3.43 -3.71 -0.01 2.68 16 5 N -0.61 -14.01 2.74 -172.33 -0.47 -14.48 16 6 C -0.26 -7.14 10.06 -15.06 -0.15 -7.29 16 7 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.02 0.68 5.35 -17.43 -0.09 0.58 16 9 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 10 Si 0.89 22.14 24.24 -169.99 -4.12 18.02 16 11 H -0.29 -6.71 6.42 56.52 0.36 -6.34 16 12 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.27 -6.62 6.57 56.52 0.37 -6.25 16 14 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 15 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 16 C 0.16 2.44 1.84 -67.89 -0.12 2.32 16 17 H 0.08 1.43 7.66 -51.93 -0.40 1.03 16 18 N -0.70 -8.86 4.35 -54.92 -0.24 -9.10 16 19 C 0.59 8.11 7.75 -12.64 -0.10 8.01 16 20 O -0.54 -8.83 14.05 5.25 0.07 -8.75 16 21 C -0.04 -0.44 6.96 -82.06 -0.57 -1.01 16 22 C -0.19 -1.91 10.50 -38.99 -0.41 -2.32 16 23 C -0.01 -0.08 12.03 -17.43 -0.21 -0.28 16 24 N -0.28 -3.22 11.07 30.59 0.34 -2.88 16 25 N -0.25 -2.98 3.03 -49.62 -0.15 -3.13 16 26 C 0.13 1.39 3.59 -66.82 -0.24 1.15 16 27 C -0.13 -1.18 6.50 -25.03 -0.16 -1.34 16 28 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 29 C -0.12 -0.89 6.83 -25.07 -0.17 -1.07 16 30 C -0.13 -1.22 6.54 -25.61 -0.17 -1.39 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 34 H 0.03 0.59 6.91 -51.93 -0.36 0.23 16 35 H 0.08 1.79 4.41 -51.92 -0.23 1.56 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 39 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 4.10 7.38 -40.82 -0.30 3.80 16 42 H 0.16 1.14 7.62 -52.48 -0.40 0.74 16 43 H 0.18 1.20 8.06 -52.48 -0.42 0.77 16 44 H 0.14 1.75 5.39 -51.93 -0.28 1.47 16 45 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -31.89 397.55 -9.12 -41.01 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.68 Total: 4.48 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.64 Total: -4.26 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.25 Total: -56.49 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.12 Total: 18.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.89 -9.12 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.099 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds