Wall clock time and date at job start Wed Apr 1 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.49490 * 2 1 4 4 C 1.53188 * 109.49679 * 239.93594 * 2 1 3 5 5 N 1.46927 * 108.77733 * 185.41187 * 4 2 1 6 6 C 1.36935 * 120.63084 * 233.58807 * 5 4 2 7 7 H 1.08000 * 120.00283 * 147.73120 * 6 5 4 8 8 C 1.38812 * 120.00028 * 327.72948 * 6 5 4 9 9 N 1.31619 * 120.00092 * 167.75069 * 8 6 5 10 10 Si 1.86795 * 120.00045 * 347.75159 * 8 6 5 11 11 H 1.48497 * 109.47360 * 85.97554 * 10 8 6 12 12 H 1.48505 * 109.47617 * 205.97561 * 10 8 6 13 13 H 1.48497 * 109.47393 * 325.97567 * 10 8 6 14 14 C 1.46920 * 118.73581 * 53.60866 * 5 4 2 15 15 C 1.53191 * 108.77731 * 306.38894 * 14 5 4 16 16 C 1.53036 * 109.50067 * 120.06564 * 2 1 3 17 17 H 1.08998 * 109.46356 * 61.29506 * 16 2 1 18 18 N 1.46509 * 109.45880 * 301.33676 * 16 2 1 19 19 C 1.34774 * 120.00022 * 154.99930 * 18 16 2 20 20 O 1.21635 * 119.99714 * 5.24142 * 19 18 16 21 21 C 1.47158 * 119.99998 * 185.24238 * 19 18 16 22 22 C 1.38401 * 126.88608 * 5.18364 * 21 19 18 23 23 C 1.39671 * 105.35837 * 180.02562 * 22 21 19 24 24 N 1.30859 * 107.86762 * 359.97438 * 23 22 21 25 25 N 1.28450 * 110.92300 * 359.72026 * 24 23 22 26 26 C 1.46502 * 125.18870 * 180.28339 * 25 24 23 27 27 C 1.54266 * 110.03568 * 52.31154 * 26 25 24 28 28 C 1.54964 * 104.16146 * 217.13537 * 27 26 25 29 29 C 1.54891 * 102.77408 * 37.88980 * 28 27 26 30 30 C 1.53868 * 110.03072 * 295.09143 * 26 25 24 31 31 H 1.09001 * 109.46678 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47200 * 60.00114 * 1 2 3 33 33 H 1.08999 * 109.47142 * 299.99695 * 1 2 3 34 34 H 1.08998 * 109.59035 * 305.20201 * 4 2 1 35 35 H 1.09007 * 109.58664 * 65.47883 * 4 2 1 36 36 H 0.97003 * 120.00287 * 179.97438 * 9 8 6 37 37 H 1.08991 * 109.59142 * 66.18397 * 14 5 4 38 38 H 1.09004 * 109.58324 * 186.60687 * 14 5 4 39 39 H 1.08998 * 109.49950 * 174.58599 * 15 14 5 40 40 H 1.09002 * 109.50341 * 294.65508 * 15 14 5 41 41 H 0.96997 * 119.99942 * 335.00171 * 18 16 2 42 42 H 1.08003 * 127.31915 * 359.97097 * 22 21 19 43 43 H 1.08005 * 126.06460 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.01453 * 173.70590 * 26 25 24 45 45 H 1.09001 * 110.48689 * 335.78756 * 27 26 25 46 46 H 1.09001 * 110.48096 * 98.42607 * 27 26 25 47 47 H 1.08999 * 110.72066 * 279.57584 * 28 27 26 48 48 H 1.08997 * 110.92259 * 156.29618 * 28 27 26 49 49 H 1.08999 * 110.48148 * 203.40598 * 29 28 27 50 50 H 1.08997 * 110.60501 * 80.81709 * 29 28 27 51 51 H 1.08998 * 110.03489 * 238.57169 * 30 26 25 52 52 H 1.09001 * 110.03537 * 359.95780 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8288 -1.1699 6 6 4.2935 -0.3786 -2.1946 7 1 5.2710 0.0298 -1.9844 8 6 3.8369 -0.4473 -3.5037 9 7 4.4761 0.1953 -4.4582 10 14 2.3154 -1.4515 -3.9108 11 1 1.1030 -0.6193 -3.7038 12 1 2.3773 -1.8920 -5.3276 13 1 2.2560 -2.6415 -3.0246 14 6 4.1053 -1.4267 0.0302 15 6 3.5709 -0.6953 1.2657 16 6 2.0409 -0.7227 1.2485 17 1 1.6968 -1.7569 1.2358 18 7 1.5266 -0.0522 2.4453 19 6 1.3986 -0.7372 3.5990 20 8 1.7982 -1.8836 3.6731 21 6 0.7754 -0.0980 4.7689 22 6 0.1854 1.1530 4.8160 23 6 -0.2540 1.3054 6.1330 24 7 0.0622 0.2187 6.7900 25 7 0.6579 -0.6232 6.0244 26 6 1.1417 -1.9433 6.4362 27 6 0.0075 -2.7310 7.1238 28 6 0.7202 -3.5088 8.2589 29 6 1.7762 -2.4925 8.7598 30 6 2.2661 -1.7920 7.4756 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.6053 -1.7212 -1.2986 35 1 1.7615 -0.1586 -2.1391 36 1 4.1573 0.1470 -5.3730 37 1 3.8376 -2.4817 0.0860 38 1 5.1896 -1.3245 -0.0143 39 1 3.9335 -1.1903 2.1666 40 1 3.9164 0.3384 1.2544 41 1 1.2782 0.8846 2.4074 42 1 0.0866 1.8613 4.0067 43 1 -0.7643 2.1671 6.5374 44 1 1.5064 -2.4941 5.5692 45 1 -0.7350 -2.0483 7.5371 46 1 -0.4578 -3.4219 6.4206 47 1 1.2016 -4.4055 7.8687 48 1 0.0207 -3.7632 9.0552 49 1 2.6007 -3.0098 9.2504 50 1 1.3221 -1.7706 9.4386 51 1 3.1762 -2.2701 7.1135 52 1 2.4524 -0.7363 7.6732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942094721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:19 Heat of formation + Delta-G solvation = 35.620539 kcal Electronic energy + Delta-G solvation = -31523.038563 eV Core-core repulsion = 27523.455067 eV Total energy + Delta-G solvation = -3999.583495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.59855 -41.04347 -39.30674 -38.92948 -36.31228 -34.29829 -33.62703 -33.21048 -32.47694 -31.15813 -29.82923 -28.62752 -27.68464 -27.00146 -24.89348 -23.66369 -23.19706 -22.44741 -21.82885 -21.54076 -21.39043 -20.38280 -19.15701 -18.59842 -17.66622 -17.27773 -16.99991 -16.64835 -16.55376 -16.05293 -15.81654 -15.61957 -15.33912 -15.19266 -14.94514 -14.80392 -14.62757 -14.40482 -14.35554 -14.16231 -14.04574 -13.44637 -13.25542 -12.96938 -12.86994 -12.71695 -12.58384 -12.37142 -12.19630 -12.13106 -12.06582 -12.04406 -11.93675 -11.77868 -11.69204 -11.55756 -11.53698 -11.32033 -11.01924 -10.67859 -10.34356 -10.03491 -9.94766 -8.89595 -8.15901 -5.56877 0.21736 1.28208 1.33065 1.41678 1.50049 1.67197 2.11905 2.14966 2.40351 3.10087 3.26722 3.33464 3.46941 3.50519 3.66062 3.79923 3.91956 3.92788 4.03524 4.14047 4.25617 4.29174 4.35975 4.38742 4.43748 4.46560 4.52373 4.56537 4.63866 4.66927 4.69822 4.74320 4.76908 4.86118 4.87911 4.91533 4.95908 4.99997 5.06304 5.08200 5.11404 5.14671 5.20428 5.29552 5.35605 5.37896 5.46478 5.60328 5.79647 5.89809 6.13825 6.40316 6.90817 7.03070 7.12754 7.59144 8.01311 9.03909 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002520 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.658845 B =11107.040867 C =11587.772269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.081 0.919 4 C 0.123 3.877 5 N -0.620 5.620 6 C -0.249 4.249 7 H 0.051 0.949 8 C -0.033 4.033 9 N -0.961 5.961 10 Si 0.952 3.048 11 H -0.262 1.262 12 H -0.314 1.314 13 H -0.265 1.265 14 C 0.148 3.852 15 C -0.130 4.130 16 C 0.171 3.829 17 H 0.073 0.927 18 N -0.690 5.690 19 C 0.591 3.409 20 O -0.572 6.572 21 C -0.063 4.063 22 C -0.176 4.176 23 C -0.009 4.009 24 N -0.291 5.291 25 N -0.256 5.256 26 C 0.122 3.878 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.115 4.115 30 C -0.127 4.127 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.189 0.811 43 H 0.216 0.784 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 -0.699 26.647 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.099 0.901 4 C -0.002 4.002 5 N -0.345 5.345 6 C -0.378 4.378 7 H 0.068 0.932 8 C -0.228 4.228 9 N -0.607 5.607 10 Si 0.782 3.218 11 H -0.188 1.188 12 H -0.243 1.243 13 H -0.190 1.190 14 C 0.022 3.978 15 C -0.170 4.170 16 C 0.067 3.933 17 H 0.091 0.909 18 N -0.340 5.340 19 C 0.377 3.623 20 O -0.452 6.452 21 C -0.191 4.191 22 C -0.205 4.205 23 C -0.184 4.184 24 N -0.124 5.124 25 N -0.044 5.044 26 C 0.022 3.978 27 C -0.164 4.164 28 C -0.153 4.153 29 C -0.153 4.153 30 C -0.166 4.166 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.253 0.747 42 H 0.206 0.794 43 H 0.233 0.767 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.692 -2.127 27.616 30.467 hybrid contribution -0.138 0.507 -1.816 1.891 sum -12.830 -1.620 25.800 28.859 Atomic orbital electron populations 1.21791 0.92902 1.02283 1.02970 1.21784 0.96943 1.00268 0.93425 0.90100 1.21545 0.83647 0.97670 0.97349 1.44470 1.01420 1.70571 1.18011 1.18829 1.00200 1.33164 0.85645 0.93172 1.26045 1.01557 0.99817 0.95392 1.69900 1.43752 1.45747 1.01308 0.85903 0.80403 0.80269 0.75275 1.18804 1.24293 1.19029 1.21003 0.97083 0.94584 0.85084 1.22228 0.95416 1.01341 0.98028 1.20747 0.93113 0.96600 0.82847 0.90931 1.45641 1.64819 1.14998 1.08566 1.17125 0.77824 0.85005 0.82301 1.90718 1.51483 1.19171 1.83862 1.21498 1.11233 0.97738 0.88633 1.22676 1.02552 0.95303 1.00006 1.24172 1.04334 0.97803 0.92116 1.73105 1.13400 1.01899 1.23975 1.46073 1.39312 1.14128 1.04895 1.22913 0.96155 0.77931 1.00830 1.22695 0.96661 0.98662 0.98379 1.22480 0.97865 0.97813 0.97165 1.22316 0.99200 0.97972 0.95767 1.22468 0.97089 1.01566 0.95446 0.92908 0.92081 0.90159 0.95170 0.92121 0.92886 0.95245 0.92370 0.91477 0.91803 0.74695 0.79367 0.76707 0.86240 0.90642 0.90886 0.90268 0.89369 0.89650 0.91214 0.90208 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.03 71.98 0.65 -2.66 16 2 C -0.10 -3.09 2.46 -10.72 -0.03 -3.11 16 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.12 4.94 3.43 86.36 0.30 5.23 16 5 N -0.62 -28.59 2.74 -699.12 -1.92 -30.51 16 6 C -0.25 -13.96 10.06 84.03 0.85 -13.11 16 7 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 8 C -0.03 -1.93 5.35 84.86 0.45 -1.48 16 9 N -0.96 -59.99 13.97 21.65 0.30 -59.69 16 10 Si 0.95 46.02 24.24 68.60 1.66 47.68 16 11 H -0.26 -11.53 6.42 99.48 0.64 -10.90 16 12 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 13 H -0.27 -12.46 6.57 99.48 0.65 -11.80 16 14 C 0.15 5.80 6.52 86.36 0.56 6.36 16 15 C -0.13 -4.17 5.65 30.67 0.17 -4.00 16 16 C 0.17 4.92 1.84 45.01 0.08 5.00 16 17 H 0.07 2.33 7.66 -2.39 -0.02 2.31 16 18 N -0.69 -15.63 4.35 -445.92 -1.94 -17.57 16 19 C 0.59 15.32 7.75 86.59 0.67 15.99 16 20 O -0.57 -18.32 14.05 -4.14 -0.06 -18.38 16 21 C -0.06 -1.43 6.96 40.78 0.28 -1.15 16 22 C -0.18 -2.91 10.50 22.66 0.24 -2.68 16 23 C -0.01 -0.15 12.03 85.18 1.02 0.87 16 24 N -0.29 -6.27 11.07 -57.14 -0.63 -6.90 16 25 N -0.26 -5.88 3.03 -310.89 -0.94 -6.82 16 26 C 0.12 2.60 3.59 45.71 0.16 2.77 16 27 C -0.13 -2.19 6.50 31.69 0.21 -1.99 16 28 C -0.12 -1.46 6.91 31.91 0.22 -1.24 16 29 C -0.11 -1.54 6.83 31.67 0.22 -1.32 16 30 C -0.13 -2.32 6.54 31.32 0.20 -2.11 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.42 7.36 -2.39 -0.02 1.41 16 34 H 0.03 1.21 6.91 -2.39 -0.02 1.19 16 35 H 0.06 2.66 4.41 -2.38 -0.01 2.65 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 2.34 7.93 -2.38 -0.02 2.32 16 39 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.42 6.99 7.38 -92.71 -0.68 6.31 16 42 H 0.19 1.81 7.62 -2.91 -0.02 1.79 16 43 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.12 3.04 5.39 -2.39 -0.01 3.03 16 45 H 0.07 1.43 7.47 -2.39 -0.02 1.41 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 Total: -1.00 -71.32 397.55 2.86 -68.46 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.11 Total: 22.36 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.27 Total: 1.37 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.13 Total: -121.49 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.06 Total: -18.38 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.66 Total: 47.68 kcal Total: -71.32 2.86 -68.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.080 kcal (2) G-P(sol) polarization free energy of solvation -71.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds