Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.49841 * 2 1 4 4 C 1.53195 * 109.52372 * 120.08150 * 2 1 3 5 5 N 1.46929 * 108.77512 * 174.60108 * 4 2 1 6 6 C 1.36942 * 120.62883 * 126.37145 * 5 4 2 7 7 H 1.07996 * 119.99798 * 211.59126 * 6 5 4 8 8 C 1.38813 * 119.99873 * 31.58992 * 6 5 4 9 9 N 1.31618 * 120.00258 * 10.29922 * 8 6 5 10 10 Si 1.86799 * 119.99705 * 190.30111 * 8 6 5 11 11 H 1.48499 * 109.47380 * 59.99827 * 10 8 6 12 12 H 1.48494 * 109.47352 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47078 * 299.99746 * 10 8 6 14 14 C 1.46924 * 118.73990 * 306.38987 * 5 4 2 15 15 C 1.53195 * 108.77600 * 53.60774 * 14 5 4 16 16 C 1.53037 * 109.49672 * 239.93407 * 2 1 3 17 17 H 1.09003 * 109.46462 * 298.66917 * 16 2 1 18 18 N 1.46504 * 109.46260 * 58.63231 * 16 2 1 19 19 C 1.34768 * 120.00270 * 205.00014 * 18 16 2 20 20 O 1.21625 * 120.00039 * 4.89277 * 19 18 16 21 21 C 1.47160 * 120.00149 * 184.89506 * 19 18 16 22 22 C 1.38403 * 126.88372 * 354.67560 * 21 19 18 23 23 C 1.39676 * 105.36280 * 179.91388 * 22 21 19 24 24 N 1.30861 * 107.85626 * 0.35496 * 23 22 21 25 25 N 1.28442 * 110.93236 * 359.77244 * 24 23 22 26 26 C 1.46498 * 125.19350 * 180.02562 * 25 24 23 27 27 C 1.54271 * 110.02970 * 62.25367 * 26 25 24 28 28 C 1.54890 * 104.19223 * 217.10512 * 27 26 25 29 29 C 1.54895 * 102.75077 * 37.94578 * 28 27 26 30 30 C 1.53871 * 110.03390 * 305.08754 * 26 25 24 31 31 H 1.09001 * 109.47741 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47263 * 300.06662 * 1 2 3 33 33 H 1.09002 * 109.47472 * 60.06303 * 1 2 3 34 34 H 1.09000 * 109.58721 * 294.38960 * 4 2 1 35 35 H 1.09001 * 109.58865 * 54.81557 * 4 2 1 36 36 H 0.96992 * 119.99629 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.58457 * 173.39334 * 14 5 4 38 38 H 1.09002 * 109.59004 * 293.82406 * 14 5 4 39 39 H 1.08996 * 109.49992 * 185.40818 * 15 14 5 40 40 H 1.09007 * 109.49392 * 65.31264 * 15 14 5 41 41 H 0.97007 * 119.99153 * 24.99878 * 18 16 2 42 42 H 1.08007 * 127.31897 * 0.03008 * 22 21 19 43 43 H 1.07996 * 126.06699 * 180.08973 * 23 22 21 44 44 H 1.09000 * 110.01624 * 183.69313 * 26 25 24 45 45 H 1.09004 * 110.48668 * 335.78146 * 27 26 25 46 46 H 1.08990 * 110.48695 * 98.42783 * 27 26 25 47 47 H 1.09002 * 110.75757 * 279.62507 * 28 27 26 48 48 H 1.09004 * 110.75782 * 156.25745 * 28 27 26 49 49 H 1.08999 * 110.48423 * 203.38007 * 29 28 27 50 50 H 1.08994 * 110.48736 * 80.73006 * 29 28 27 51 51 H 1.09000 * 110.03410 * 238.56855 * 30 26 25 52 52 H 1.09009 * 110.03166 * 0.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5053 -0.8284 1.1690 6 6 4.2943 -0.3775 2.1934 7 1 5.2758 0.0212 1.9836 8 6 3.8325 -0.4329 3.5012 9 7 2.7321 -1.0977 3.7831 10 14 4.7730 0.4361 4.8613 11 1 4.8402 1.8898 4.5659 12 1 4.0779 0.2254 6.1565 13 1 6.1490 -0.1167 4.9429 14 6 4.1059 -1.4256 -0.0316 15 6 3.5708 -0.6941 -1.2666 16 6 2.0407 -0.7227 -1.2485 17 1 1.6971 -1.7571 -1.2355 18 7 1.5258 -0.0528 -2.4453 19 6 1.3978 -0.7380 -3.5987 20 8 1.6246 -1.9326 -3.6248 21 6 0.9835 -0.0407 -4.8267 22 6 0.5931 1.2823 -4.9393 23 6 0.3017 1.4682 -6.2926 24 7 0.5037 0.3304 -6.9066 25 7 0.9017 -0.5712 -6.0829 26 6 1.2198 -1.9568 -6.4366 27 6 2.4001 -1.9911 -7.4293 28 6 2.0517 -3.1520 -8.3936 29 6 0.5179 -3.0117 -8.5575 30 6 0.0231 -2.6057 -7.1539 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.7644 -0.1581 2.1388 35 1 1.6063 -1.7217 1.2979 36 1 2.4093 -1.1360 4.6969 37 1 5.1901 -1.3230 0.0127 38 1 3.8386 -2.4808 -0.0876 39 1 3.9334 -1.1884 -2.1678 40 1 3.9154 0.3400 -1.2546 41 1 1.2771 0.8841 -2.4074 42 1 0.5292 2.0157 -4.1490 43 1 -0.0350 2.3867 -6.7501 44 1 1.4691 -2.5231 -5.5392 45 1 2.4676 -1.0495 -7.9744 46 1 3.3333 -2.1973 -6.9053 47 1 2.3063 -4.1138 -7.9482 48 1 2.5559 -3.0232 -9.3514 49 1 0.0777 -3.9628 -8.8569 50 1 0.2815 -2.2350 -9.2848 51 1 -0.3078 -3.4874 -6.6052 52 1 -0.7942 -1.8895 -7.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942094722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = 48.283486 kcal Electronic energy + Delta-G solvation = -31403.828660 eV Core-core repulsion = 27404.794271 eV Total energy + Delta-G solvation = -3999.034389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.71378 -39.67493 -38.20119 -37.59103 -34.63964 -32.74047 -32.27515 -31.87063 -30.93053 -29.24206 -29.09656 -27.85504 -25.97187 -25.30079 -23.46041 -22.40441 -21.94031 -21.05837 -20.94755 -20.51422 -19.91734 -19.04837 -17.88481 -16.75260 -16.35022 -16.08459 -15.79365 -15.77387 -14.91386 -14.68527 -14.65426 -14.27659 -13.97862 -13.84287 -13.69333 -13.61177 -13.30284 -13.08621 -12.90767 -12.58094 -12.13867 -12.09346 -11.90063 -11.51847 -11.49943 -11.45084 -11.37709 -11.23174 -11.02280 -10.92832 -10.86789 -10.78046 -10.69052 -10.40810 -10.19817 -10.03515 -9.97363 -9.73883 -9.52568 -9.31590 -9.14120 -8.75783 -8.49519 -6.65454 -5.81452 -3.29584 1.19834 2.24550 2.50181 3.20789 3.28407 3.36624 3.41908 3.42614 4.10625 4.21178 4.46179 4.53712 4.56205 4.64356 4.98246 5.05387 5.09629 5.14720 5.19596 5.21118 5.30685 5.31621 5.42759 5.45257 5.50851 5.52820 5.55717 5.59961 5.66668 5.70916 5.81547 5.83802 5.90940 5.99498 6.05801 6.10959 6.19513 6.30834 6.37575 6.43241 6.45754 6.55304 6.66416 6.66627 6.75903 6.87950 6.95977 7.32349 7.51701 7.66326 7.76648 7.97178 8.19714 8.45120 9.19477 9.80353 10.38790 11.26918 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002359 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.705445 B =11864.652538 C =12352.948553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.182 3.818 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.064 0.936 8 C 0.005 3.995 9 N -0.905 5.905 10 Si 0.905 3.095 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.086 0.914 18 N -0.702 5.702 19 C 0.588 3.412 20 O -0.544 6.544 21 C -0.034 4.034 22 C -0.193 4.193 23 C -0.008 4.008 24 N -0.277 5.277 25 N -0.248 5.248 26 C 0.128 3.872 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.120 4.120 30 C -0.129 4.129 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.159 0.841 43 H 0.184 0.816 44 H 0.141 0.859 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.078 0.922 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 1.863 -22.049 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 H 0.087 0.913 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.549 5.549 10 Si 0.735 3.265 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.104 0.896 18 N -0.351 5.351 19 C 0.373 3.627 20 O -0.422 6.422 21 C -0.163 4.163 22 C -0.222 4.222 23 C -0.184 4.184 24 N -0.110 5.110 25 N -0.035 5.035 26 C 0.028 3.972 27 C -0.169 4.169 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.167 4.167 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.176 0.824 43 H 0.201 0.799 44 H 0.158 0.842 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.097 0.903 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.150 0.306 -22.930 23.743 hybrid contribution 0.298 1.482 1.533 2.153 sum -5.852 1.787 -21.397 22.255 Atomic orbital electron populations 1.21735 0.95830 1.01531 1.00669 1.22196 0.94760 1.00687 0.96696 0.91345 1.20831 0.83079 0.97088 0.93470 1.44048 1.01701 1.69315 1.16434 1.19129 0.99738 1.34270 0.85240 0.91839 1.25176 0.98067 0.98727 0.97395 1.69946 1.23471 1.42620 1.18860 0.86337 0.79378 0.79508 0.81290 1.20978 1.21596 1.20850 1.20882 0.96707 0.94260 0.86069 1.22419 0.94571 1.01512 0.99575 1.21172 0.93870 0.97393 0.82121 0.89639 1.46032 1.64800 1.14530 1.09758 1.16941 0.77431 0.86135 0.82225 1.90713 1.51952 1.14303 1.85267 1.21581 1.11493 0.94794 0.88396 1.22252 1.06964 0.94628 0.98374 1.23532 1.05864 0.96702 0.92263 1.73097 1.16753 0.98661 1.22444 1.45957 1.44329 1.09984 1.03260 1.22898 0.96155 0.76011 1.02153 1.22737 0.97052 1.00370 0.96714 1.22471 0.95974 0.98194 0.99281 1.22333 0.95539 1.01515 0.96408 1.22463 0.97024 1.00923 0.96314 0.92983 0.92488 0.93891 0.88795 0.96077 0.93477 0.92499 0.96147 0.92807 0.92169 0.76628 0.82376 0.79913 0.84159 0.90229 0.90544 0.90845 0.90881 0.91175 0.91108 0.90308 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 37.15 0.34 -1.76 16 2 C -0.12 -2.14 2.46 -90.50 -0.22 -2.37 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.18 4.13 4.54 -3.71 -0.02 4.12 16 5 N -0.59 -14.45 2.99 -172.31 -0.51 -14.96 16 6 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 7 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 8 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 9 N -0.90 -25.61 11.05 55.49 0.61 -24.99 16 10 Si 0.91 21.27 29.57 -169.99 -5.03 16.24 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.16 2.63 1.92 -67.89 -0.13 2.50 16 17 H 0.09 1.62 7.51 -51.93 -0.39 1.23 16 18 N -0.70 -9.67 4.35 -54.92 -0.24 -9.91 16 19 C 0.59 8.70 7.76 -12.64 -0.10 8.61 16 20 O -0.54 -9.47 14.03 5.26 0.07 -9.40 16 21 C -0.03 -0.44 6.96 -82.06 -0.57 -1.02 16 22 C -0.19 -2.06 10.50 -38.98 -0.41 -2.47 16 23 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 24 N -0.28 -3.39 11.04 30.59 0.34 -3.05 16 25 N -0.25 -3.15 3.06 -49.61 -0.15 -3.30 16 26 C 0.13 1.47 3.60 -66.81 -0.24 1.23 16 27 C -0.13 -1.28 6.51 -25.07 -0.16 -1.45 16 28 C -0.12 -0.93 6.91 -24.73 -0.17 -1.10 16 29 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 30 C -0.13 -1.25 6.47 -25.61 -0.17 -1.42 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 34 H 0.09 2.40 6.11 -51.93 -0.32 2.08 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.40 4.54 7.34 -40.82 -0.30 4.24 16 42 H 0.16 1.26 7.59 -52.48 -0.40 0.86 16 43 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.14 1.86 5.36 -51.93 -0.28 1.58 16 45 H 0.08 0.85 7.76 -51.93 -0.40 0.44 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.08 0.82 7.63 -51.92 -0.40 0.43 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -30.54 404.35 -10.20 -40.73 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.74 Total: 5.54 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.64 Total: -2.98 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.05 Total: -56.22 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.54 -10.20 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.016 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds