Wall clock time and date at job start Wed Apr 1 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.49841 * 2 1 4 4 C 1.53195 * 109.52372 * 120.08150 * 2 1 3 5 5 N 1.46929 * 108.77512 * 174.60108 * 4 2 1 6 6 C 1.36942 * 120.62883 * 126.37145 * 5 4 2 7 7 H 1.07996 * 119.99798 * 211.59126 * 6 5 4 8 8 C 1.38813 * 119.99873 * 31.58992 * 6 5 4 9 9 N 1.31618 * 120.00258 * 10.29922 * 8 6 5 10 10 Si 1.86799 * 119.99705 * 190.30111 * 8 6 5 11 11 H 1.48499 * 109.47380 * 59.99827 * 10 8 6 12 12 H 1.48494 * 109.47352 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47078 * 299.99746 * 10 8 6 14 14 C 1.46924 * 118.73990 * 306.38987 * 5 4 2 15 15 C 1.53195 * 108.77600 * 53.60774 * 14 5 4 16 16 C 1.53037 * 109.49672 * 239.93407 * 2 1 3 17 17 H 1.09003 * 109.46462 * 298.66917 * 16 2 1 18 18 N 1.46504 * 109.46260 * 58.63231 * 16 2 1 19 19 C 1.34768 * 120.00270 * 205.00014 * 18 16 2 20 20 O 1.21625 * 120.00039 * 4.89277 * 19 18 16 21 21 C 1.47160 * 120.00149 * 184.89506 * 19 18 16 22 22 C 1.38403 * 126.88372 * 354.67560 * 21 19 18 23 23 C 1.39676 * 105.36280 * 179.91388 * 22 21 19 24 24 N 1.30861 * 107.85626 * 0.35496 * 23 22 21 25 25 N 1.28442 * 110.93236 * 359.77244 * 24 23 22 26 26 C 1.46498 * 125.19350 * 180.02562 * 25 24 23 27 27 C 1.54271 * 110.02970 * 62.25367 * 26 25 24 28 28 C 1.54890 * 104.19223 * 217.10512 * 27 26 25 29 29 C 1.54895 * 102.75077 * 37.94578 * 28 27 26 30 30 C 1.53871 * 110.03390 * 305.08754 * 26 25 24 31 31 H 1.09001 * 109.47741 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47263 * 300.06662 * 1 2 3 33 33 H 1.09002 * 109.47472 * 60.06303 * 1 2 3 34 34 H 1.09000 * 109.58721 * 294.38960 * 4 2 1 35 35 H 1.09001 * 109.58865 * 54.81557 * 4 2 1 36 36 H 0.96992 * 119.99629 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.58457 * 173.39334 * 14 5 4 38 38 H 1.09002 * 109.59004 * 293.82406 * 14 5 4 39 39 H 1.08996 * 109.49992 * 185.40818 * 15 14 5 40 40 H 1.09007 * 109.49392 * 65.31264 * 15 14 5 41 41 H 0.97007 * 119.99153 * 24.99878 * 18 16 2 42 42 H 1.08007 * 127.31897 * 0.03008 * 22 21 19 43 43 H 1.07996 * 126.06699 * 180.08973 * 23 22 21 44 44 H 1.09000 * 110.01624 * 183.69313 * 26 25 24 45 45 H 1.09004 * 110.48668 * 335.78146 * 27 26 25 46 46 H 1.08990 * 110.48695 * 98.42783 * 27 26 25 47 47 H 1.09002 * 110.75757 * 279.62507 * 28 27 26 48 48 H 1.09004 * 110.75782 * 156.25745 * 28 27 26 49 49 H 1.08999 * 110.48423 * 203.38007 * 29 28 27 50 50 H 1.08994 * 110.48736 * 80.73006 * 29 28 27 51 51 H 1.09000 * 110.03410 * 238.56855 * 30 26 25 52 52 H 1.09009 * 110.03166 * 0.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5053 -0.8284 1.1690 6 6 4.2943 -0.3775 2.1934 7 1 5.2758 0.0212 1.9836 8 6 3.8325 -0.4329 3.5012 9 7 2.7321 -1.0977 3.7831 10 14 4.7730 0.4361 4.8613 11 1 4.8402 1.8898 4.5659 12 1 4.0779 0.2254 6.1565 13 1 6.1490 -0.1167 4.9429 14 6 4.1059 -1.4256 -0.0316 15 6 3.5708 -0.6941 -1.2666 16 6 2.0407 -0.7227 -1.2485 17 1 1.6971 -1.7571 -1.2355 18 7 1.5258 -0.0528 -2.4453 19 6 1.3978 -0.7380 -3.5987 20 8 1.6246 -1.9326 -3.6248 21 6 0.9835 -0.0407 -4.8267 22 6 0.5931 1.2823 -4.9393 23 6 0.3017 1.4682 -6.2926 24 7 0.5037 0.3304 -6.9066 25 7 0.9017 -0.5712 -6.0829 26 6 1.2198 -1.9568 -6.4366 27 6 2.4001 -1.9911 -7.4293 28 6 2.0517 -3.1520 -8.3936 29 6 0.5179 -3.0117 -8.5575 30 6 0.0231 -2.6057 -7.1539 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.7644 -0.1581 2.1388 35 1 1.6063 -1.7217 1.2979 36 1 2.4093 -1.1360 4.6969 37 1 5.1901 -1.3230 0.0127 38 1 3.8386 -2.4808 -0.0876 39 1 3.9334 -1.1884 -2.1678 40 1 3.9154 0.3400 -1.2546 41 1 1.2771 0.8841 -2.4074 42 1 0.5292 2.0157 -4.1490 43 1 -0.0350 2.3867 -6.7501 44 1 1.4691 -2.5231 -5.5392 45 1 2.4676 -1.0495 -7.9744 46 1 3.3333 -2.1973 -6.9053 47 1 2.3063 -4.1138 -7.9482 48 1 2.5559 -3.0232 -9.3514 49 1 0.0777 -3.9628 -8.8569 50 1 0.2815 -2.2350 -9.2848 51 1 -0.3078 -3.4874 -6.6052 52 1 -0.7942 -1.8895 -7.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942094722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:23 Heat of formation + Delta-G solvation = 31.515502 kcal Electronic energy + Delta-G solvation = -31404.555774 eV Core-core repulsion = 27404.794271 eV Total energy + Delta-G solvation = -3999.761503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.59565 -40.96650 -39.12851 -38.92149 -36.21844 -34.18879 -33.52168 -33.18803 -32.13745 -30.80394 -29.82797 -28.62303 -27.54686 -26.99973 -24.83566 -23.38435 -23.15035 -22.52635 -21.74105 -21.58044 -21.25341 -20.24125 -19.06647 -18.51955 -17.46391 -17.08915 -16.90021 -16.70384 -16.59702 -15.80930 -15.75721 -15.53125 -15.37812 -15.16494 -14.78525 -14.67813 -14.58401 -14.40107 -14.20680 -14.09022 -13.53185 -13.19558 -12.90923 -12.88975 -12.85543 -12.67708 -12.56217 -12.47254 -12.18434 -12.13189 -12.07244 -12.04922 -11.85379 -11.77884 -11.71922 -11.57327 -11.55063 -11.25756 -10.95363 -10.55884 -10.32967 -10.01567 -9.93001 -8.64429 -7.86473 -5.38133 0.22252 1.33674 1.49314 1.50430 1.57481 1.67763 2.12159 2.18170 2.51503 3.29794 3.33646 3.47315 3.50324 3.66351 3.77810 3.80617 3.92282 4.01518 4.14556 4.20724 4.29703 4.34119 4.36712 4.38601 4.46976 4.57389 4.60903 4.65442 4.70662 4.73683 4.74751 4.84329 4.87771 4.91891 4.94913 4.97194 5.05305 5.08651 5.11344 5.13212 5.16969 5.30652 5.34949 5.36013 5.46797 5.52841 5.60575 5.65966 5.76529 5.80065 6.40966 6.43646 7.04952 7.13394 7.16351 7.83871 8.37905 9.19603 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002359 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.705445 B =11864.652538 C =12352.948553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.076 0.924 4 C 0.189 3.811 5 N -0.610 5.610 6 C -0.265 4.265 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.145 3.855 15 C -0.126 4.126 16 C 0.171 3.829 17 H 0.062 0.938 18 N -0.689 5.689 19 C 0.589 3.411 20 O -0.576 6.576 21 C -0.063 4.063 22 C -0.177 4.177 23 C -0.008 4.008 24 N -0.290 5.290 25 N -0.256 5.256 26 C 0.121 3.879 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.114 4.114 30 C -0.126 4.126 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.064 0.936 35 H -0.008 1.008 36 H 0.251 0.749 37 H 0.058 0.942 38 H 0.007 0.993 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.189 0.811 43 H 0.218 0.782 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 3.873 -24.005 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.095 0.905 4 C 0.063 3.937 5 N -0.333 5.333 6 C -0.395 4.395 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.581 5.581 10 Si 0.797 3.203 11 H -0.200 1.200 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.019 3.981 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.080 0.920 18 N -0.339 5.339 19 C 0.376 3.624 20 O -0.457 6.457 21 C -0.191 4.191 22 C -0.206 4.206 23 C -0.183 4.183 24 N -0.123 5.123 25 N -0.044 5.044 26 C 0.021 3.979 27 C -0.165 4.165 28 C -0.153 4.153 29 C -0.152 4.152 30 C -0.164 4.164 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.253 0.747 42 H 0.206 0.794 43 H 0.234 0.766 44 H 0.136 0.864 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.442 2.344 -24.920 25.846 hybrid contribution 0.392 0.835 2.100 2.294 sum -6.050 3.179 -22.820 23.821 Atomic orbital electron populations 1.21687 0.93647 1.01477 1.02308 1.21911 0.96455 1.00052 0.94344 0.90541 1.20617 0.82510 0.95633 0.94961 1.44308 1.02250 1.69791 1.16942 1.19459 1.00085 1.33863 0.86111 0.91624 1.25922 0.99056 0.99718 0.99519 1.70122 1.24959 1.44137 1.18864 0.85318 0.78036 0.78726 0.78175 1.20010 1.22062 1.20385 1.20960 0.96869 0.93874 0.86393 1.22217 0.95161 1.01375 0.97855 1.20742 0.93188 0.96346 0.83024 0.92020 1.45678 1.64603 1.15081 1.08549 1.17172 0.76682 0.85749 0.82808 1.90710 1.53293 1.15867 1.85786 1.21495 1.13769 0.95915 0.87924 1.22678 1.04718 0.93819 0.99350 1.24179 1.04752 0.97165 0.92237 1.73100 1.17014 0.99330 1.22858 1.46062 1.44747 1.10340 1.03238 1.22919 0.97498 0.75863 1.01647 1.22702 0.96224 1.00922 0.96670 1.22481 0.95995 0.97470 0.99400 1.22317 0.95528 1.02302 0.95010 1.22446 0.96016 1.00483 0.97450 0.93936 0.92342 0.90699 0.91734 0.99008 0.93997 0.92356 0.97455 0.92150 0.91336 0.74747 0.79386 0.76566 0.86419 0.90991 0.91176 0.90280 0.89376 0.89497 0.91107 0.90151 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.03 71.98 0.65 -3.19 16 2 C -0.11 -3.69 2.46 -10.72 -0.03 -3.71 16 3 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.19 8.86 4.54 86.36 0.39 9.25 16 5 N -0.61 -30.35 2.99 -699.08 -2.09 -32.44 16 6 C -0.27 -14.36 9.58 84.03 0.81 -13.56 16 7 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16 8 C -0.05 -2.56 5.06 84.86 0.43 -2.13 16 9 N -0.94 -54.47 11.05 21.65 0.24 -54.23 16 10 Si 0.97 44.06 29.57 68.60 2.03 46.09 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 14 C 0.15 6.20 6.52 86.36 0.56 6.76 16 15 C -0.13 -4.39 5.65 30.67 0.17 -4.21 16 16 C 0.17 5.64 1.92 45.02 0.09 5.73 16 17 H 0.06 2.38 7.51 -2.39 -0.02 2.36 16 18 N -0.69 -17.78 4.35 -445.93 -1.94 -19.72 16 19 C 0.59 16.96 7.76 86.59 0.67 17.63 16 20 O -0.58 -20.36 14.03 -4.11 -0.06 -20.42 16 21 C -0.06 -1.56 6.96 40.78 0.28 -1.27 16 22 C -0.18 -3.20 10.50 22.66 0.24 -2.96 16 23 C -0.01 -0.15 12.03 85.18 1.02 0.88 16 24 N -0.29 -6.60 11.04 -57.14 -0.63 -7.23 16 25 N -0.26 -6.29 3.06 -310.88 -0.95 -7.24 16 26 C 0.12 2.78 3.60 45.72 0.16 2.95 16 27 C -0.13 -2.45 6.51 31.67 0.21 -2.24 16 28 C -0.12 -1.61 6.91 31.89 0.22 -1.39 16 29 C -0.11 -1.60 6.83 31.67 0.22 -1.39 16 30 C -0.13 -2.38 6.47 31.32 0.20 -2.18 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.68 7.36 -2.39 -0.02 1.67 16 34 H 0.06 3.41 6.11 -2.39 -0.01 3.39 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.41 8.10 7.34 -92.70 -0.68 7.42 16 42 H 0.19 2.11 7.59 -2.91 -0.02 2.09 16 43 H 0.22 2.13 8.06 -2.91 -0.02 2.10 16 44 H 0.12 3.25 5.36 -2.39 -0.01 3.24 16 45 H 0.07 1.49 7.76 -2.38 -0.02 1.47 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.06 1.37 7.63 -2.38 -0.02 1.36 16 Total: -1.00 -68.35 404.35 3.13 -65.22 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.23 Total: 25.03 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.30 Total: 4.95 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -5.37 Total: -120.87 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.35 3.13 -65.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942094722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.736 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds