Wall clock time and date at job start Wed Apr 1 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52257 * 2 1 4 4 C 1.53191 * 109.49801 * 120.07359 * 2 1 3 5 5 N 1.46928 * 108.77694 * 174.58778 * 4 2 1 6 6 C 1.36933 * 120.63090 * 126.37183 * 5 4 2 7 7 H 1.08001 * 119.99982 * 331.83806 * 6 5 4 8 8 C 1.38814 * 120.00136 * 151.82929 * 6 5 4 9 9 N 1.31621 * 120.00075 * 343.08739 * 8 6 5 10 10 Si 1.86806 * 119.99988 * 163.07756 * 8 6 5 11 11 H 1.48502 * 109.47132 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46835 * 120.00492 * 10 8 6 13 13 H 1.48494 * 109.47237 * 240.00614 * 10 8 6 14 14 C 1.46923 * 118.73872 * 306.39253 * 5 4 2 15 15 C 1.53193 * 108.76352 * 53.61696 * 14 5 4 16 16 C 1.53036 * 109.50145 * 239.91621 * 2 1 3 17 17 H 1.09003 * 109.46110 * 298.69072 * 16 2 1 18 18 N 1.46499 * 109.45872 * 58.66046 * 16 2 1 19 19 C 1.34782 * 119.99980 * 205.02963 * 18 16 2 20 20 O 1.21284 * 119.99826 * 0.02562 * 19 18 16 21 21 C 1.50691 * 119.99877 * 180.02562 * 19 18 16 22 22 C 1.50704 * 109.47259 * 179.97438 * 21 19 18 23 23 C 1.40052 * 126.10189 * 265.02705 * 22 21 19 24 24 N 1.31028 * 108.25414 * 179.97438 * 23 22 21 25 25 N 1.39658 * 108.12852 * 359.97122 * 24 23 22 26 26 C 1.34755 * 126.09614 * 84.97707 * 22 21 19 27 27 C 1.50865 * 127.76645 * 0.13079 * 26 22 21 28 28 C 1.53441 * 108.17813 * 164.19279 * 27 26 22 29 29 C 1.53148 * 109.19114 * 48.55001 * 28 27 26 30 30 C 1.46586 * 127.54895 * 180.09314 * 25 24 23 31 31 H 1.09000 * 109.46732 * 180.08336 * 1 2 3 32 32 H 1.09003 * 109.47323 * 300.08172 * 1 2 3 33 33 H 1.08997 * 109.46923 * 60.08616 * 1 2 3 34 34 H 1.08999 * 109.58962 * 294.37874 * 4 2 1 35 35 H 1.09006 * 109.58541 * 54.66279 * 4 2 1 36 36 H 0.96998 * 119.99778 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58561 * 173.39412 * 14 5 4 38 38 H 1.09002 * 109.58867 * 293.68177 * 14 5 4 39 39 H 1.09001 * 109.48842 * 185.39884 * 15 14 5 40 40 H 1.09005 * 109.51024 * 65.29971 * 15 14 5 41 41 H 0.96996 * 120.00010 * 25.03037 * 18 16 2 42 42 H 1.09001 * 109.47733 * 59.99918 * 21 19 18 43 43 H 1.08995 * 109.47459 * 299.99906 * 21 19 18 44 44 H 1.08002 * 125.87274 * 0.21840 * 23 22 21 45 45 H 1.08992 * 109.72364 * 44.51807 * 27 26 22 46 46 H 1.08999 * 109.71901 * 283.85845 * 27 26 22 47 47 H 1.09008 * 109.51552 * 288.63979 * 28 27 26 48 48 H 1.08992 * 109.52170 * 168.46864 * 28 27 26 49 49 H 1.08997 * 109.45871 * 170.54072 * 29 28 27 50 50 H 1.08996 * 109.45927 * 50.59216 * 29 28 27 51 51 H 1.09000 * 109.58135 * 282.47402 * 30 25 24 52 52 H 1.08999 * 109.58209 * 42.88476 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8290 1.1697 6 6 4.2935 -0.3782 2.1942 7 1 3.9499 0.4272 2.8262 8 6 5.5350 -0.9567 2.4204 9 7 5.8212 -2.1281 1.8928 10 14 6.7995 -0.0726 3.4734 11 1 6.2357 1.2178 3.9452 12 1 7.1470 -0.9179 4.6439 13 1 8.0207 0.1851 2.6688 14 6 4.1053 -1.4266 -0.0305 15 6 3.5709 -0.6947 -1.2657 16 6 2.0409 -0.7231 -1.2482 17 1 1.6970 -1.7574 -1.2351 18 7 1.5266 -0.0531 -2.4452 19 6 1.3980 -0.7386 -3.5985 20 8 1.7077 -1.9103 -3.6452 21 6 0.8695 -0.0492 -4.8299 22 6 0.8252 -1.0290 -5.9742 23 6 1.8159 -1.2057 -6.9481 24 7 1.4192 -2.1446 -7.7715 25 7 0.1667 -2.5937 -7.3473 26 6 -0.1746 -1.8919 -6.2421 27 6 -1.4628 -2.0791 -5.4797 28 6 -2.4350 -2.8663 -6.3683 29 6 -1.7147 -4.0905 -6.9409 30 6 -0.6627 -3.6362 -7.9590 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.7637 -0.1577 2.1389 35 1 1.6033 -1.7206 1.2995 36 1 6.6888 -2.5321 2.0506 37 1 5.1896 -1.3245 0.0140 38 1 3.8396 -2.4824 -0.0851 39 1 3.9337 -1.1893 -2.1667 40 1 3.9157 0.3393 -1.2537 41 1 1.2786 0.8839 -2.4077 42 1 1.5240 0.7828 -5.0897 43 1 -0.1347 0.3262 -4.6334 44 1 2.7485 -0.6642 -7.0078 45 1 -1.8913 -1.1067 -5.2372 46 1 -1.2699 -2.6357 -4.5626 47 1 -2.7782 -2.2307 -7.1847 48 1 -3.2894 -3.1911 -5.7747 49 1 -2.4384 -4.7405 -7.4327 50 1 -1.2274 -4.6360 -6.1329 51 1 -1.1578 -3.2367 -8.8440 52 1 -0.0368 -4.4835 -8.2391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942147960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:04 Heat of formation + Delta-G solvation = 43.883566 kcal Electronic energy + Delta-G solvation = -31180.154970 eV Core-core repulsion = 27180.929786 eV Total energy + Delta-G solvation = -3999.225184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.68339 -39.57557 -37.57630 -36.73168 -34.44502 -33.46045 -32.57663 -31.19336 -30.72006 -30.41812 -29.55151 -26.62667 -25.81995 -24.76032 -24.44067 -22.49303 -22.15549 -21.00009 -20.75437 -20.01555 -19.25791 -18.84780 -16.95805 -16.63644 -16.45741 -15.87976 -15.65126 -15.10030 -14.77913 -14.70055 -14.54903 -14.29033 -14.03610 -13.87978 -13.66216 -13.50587 -13.23334 -13.02127 -12.87415 -12.71364 -12.52407 -12.19412 -12.09804 -11.85079 -11.46282 -11.42353 -11.36909 -11.27468 -11.26050 -11.03577 -10.78180 -10.61882 -10.58365 -10.29394 -10.17851 -9.97266 -9.74500 -9.68647 -9.36673 -9.23536 -8.59833 -8.37836 -8.34228 -6.65516 -5.76287 -3.19551 1.82740 2.38996 2.69769 2.97538 3.38476 3.46261 3.48275 3.65187 4.07906 4.26815 4.35004 4.43564 4.50813 4.75523 4.86248 4.99777 5.00805 5.10796 5.16276 5.20219 5.25506 5.31074 5.34768 5.41727 5.43553 5.48727 5.51595 5.53400 5.58776 5.66769 5.77777 5.84910 5.95459 6.01872 6.10046 6.14406 6.29113 6.31357 6.47024 6.48705 6.61116 6.67780 6.71205 6.83524 6.94680 6.99434 7.03899 7.41664 7.69823 7.71366 7.81957 7.87323 8.47201 8.59886 9.23203 9.86674 10.43490 11.32102 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.002307 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.955260 B =12132.634391 C =12651.525211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 H 0.070 0.930 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.159 3.841 17 H 0.079 0.921 18 N -0.727 5.727 19 C 0.507 3.493 20 O -0.532 6.532 21 C -0.060 4.060 22 C -0.215 4.215 23 C 0.061 3.939 24 N -0.299 5.299 25 N -0.371 5.371 26 C 0.103 3.897 27 C -0.061 4.061 28 C -0.125 4.125 29 C -0.138 4.138 30 C 0.135 3.865 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.393 0.607 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.180 0.820 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 3.162 -18.213 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.097 0.903 18 N -0.377 5.377 19 C 0.293 3.707 20 O -0.408 6.408 21 C -0.101 4.101 22 C -0.227 4.227 23 C -0.125 4.125 24 N -0.119 5.119 25 N -0.155 5.155 26 C -0.024 4.024 27 C -0.100 4.100 28 C -0.162 4.162 29 C -0.176 4.176 30 C 0.014 3.986 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.226 0.774 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.197 0.803 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.030 1.383 -19.350 26.484 hybrid contribution 0.613 1.274 1.205 1.858 sum -17.416 2.657 -18.145 25.291 Atomic orbital electron populations 1.21759 0.95896 1.01449 1.00747 1.21957 0.94423 1.00564 0.96597 0.91134 1.20887 0.86008 0.96559 0.93802 1.44103 0.99275 1.71447 1.16660 1.19204 0.98499 1.11854 1.08711 0.91638 1.25068 0.99991 0.95347 0.99257 1.70049 1.22045 1.14493 1.47909 0.86243 0.81733 0.79171 0.79731 1.20269 1.21752 1.21575 1.20748 0.99365 0.93076 0.82073 1.22556 0.94139 1.01373 1.00617 1.20985 0.94393 0.96734 0.82354 0.90302 1.46315 1.66579 1.14151 1.10691 1.20648 0.78318 0.87448 0.84311 1.90714 1.49163 1.16377 1.84543 1.19896 1.02725 0.97025 0.90443 1.18951 0.96575 1.05573 1.01592 1.23761 0.99358 0.96299 0.93077 1.77249 0.94917 1.15621 1.24088 1.48465 1.14779 1.30291 1.21928 1.20632 0.97567 0.94083 0.90159 1.20464 0.89740 1.01922 0.97837 1.21665 0.98252 0.96548 0.99781 1.21973 0.97673 0.98701 0.99302 1.21738 0.91524 0.89237 0.96096 0.93024 0.92872 0.93420 0.92503 0.96326 0.93651 0.89373 0.96256 0.92870 0.92743 0.77377 0.88427 0.88992 0.80276 0.89247 0.89047 0.91282 0.90223 0.89122 0.90353 0.90167 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.03 37.16 0.34 -1.47 16 2 C -0.11 -1.86 2.46 -90.50 -0.22 -2.08 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.15 3.17 5.80 -3.71 -0.02 3.15 16 5 N -0.59 -14.82 2.99 -172.32 -0.52 -15.34 16 6 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 7 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 8 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 9 N -0.90 -26.54 11.20 55.49 0.62 -25.91 16 10 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.17 4.28 5.30 -3.71 -0.02 4.26 16 15 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 16 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.73 -9.70 4.36 -53.77 -0.23 -9.93 16 19 C 0.51 7.21 7.79 -10.99 -0.09 7.13 16 20 O -0.53 -10.15 15.70 5.55 0.09 -10.07 16 21 C -0.06 -0.61 5.98 -29.04 -0.17 -0.78 16 22 C -0.22 -2.68 4.59 -105.17 -0.48 -3.16 16 23 C 0.06 0.81 11.97 -17.21 -0.21 0.60 16 24 N -0.30 -4.28 12.62 30.70 0.39 -3.89 16 25 N -0.37 -4.54 4.04 -56.93 -0.23 -4.77 16 26 C 0.10 1.21 6.59 -82.22 -0.54 0.67 16 27 C -0.06 -0.52 6.02 -27.57 -0.17 -0.69 16 28 C -0.12 -0.77 5.97 -26.43 -0.16 -0.92 16 29 C -0.14 -0.87 5.93 -26.51 -0.16 -1.03 16 30 C 0.14 1.11 7.28 -3.85 -0.03 1.09 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 34 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.39 4.05 8.31 -40.82 -0.34 3.71 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 44 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.09 0.61 7.94 -51.93 -0.41 0.20 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.39 8.12 -51.92 -0.42 -0.03 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 407.94 15.07 6.15 6.15 Total: -1.00 -35.18 407.94 -10.17 -45.36 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.97 Total: 2.53 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.43 Total: -0.84 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.03 Total: -59.85 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.18 -10.17 -45.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942147960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.241 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds