Wall clock time and date at job start Wed Apr 1 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52257 * 2 1 4 4 C 1.53191 * 109.49801 * 120.07359 * 2 1 3 5 5 N 1.46928 * 108.77694 * 174.58778 * 4 2 1 6 6 C 1.36933 * 120.63090 * 126.37183 * 5 4 2 7 7 H 1.08001 * 119.99982 * 331.83806 * 6 5 4 8 8 C 1.38814 * 120.00136 * 151.82929 * 6 5 4 9 9 N 1.31621 * 120.00075 * 343.08739 * 8 6 5 10 10 Si 1.86806 * 119.99988 * 163.07756 * 8 6 5 11 11 H 1.48502 * 109.47132 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46835 * 120.00492 * 10 8 6 13 13 H 1.48494 * 109.47237 * 240.00614 * 10 8 6 14 14 C 1.46923 * 118.73872 * 306.39253 * 5 4 2 15 15 C 1.53193 * 108.76352 * 53.61696 * 14 5 4 16 16 C 1.53036 * 109.50145 * 239.91621 * 2 1 3 17 17 H 1.09003 * 109.46110 * 298.69072 * 16 2 1 18 18 N 1.46499 * 109.45872 * 58.66046 * 16 2 1 19 19 C 1.34782 * 119.99980 * 205.02963 * 18 16 2 20 20 O 1.21284 * 119.99826 * 0.02562 * 19 18 16 21 21 C 1.50691 * 119.99877 * 180.02562 * 19 18 16 22 22 C 1.50704 * 109.47259 * 179.97438 * 21 19 18 23 23 C 1.40052 * 126.10189 * 265.02705 * 22 21 19 24 24 N 1.31028 * 108.25414 * 179.97438 * 23 22 21 25 25 N 1.39658 * 108.12852 * 359.97122 * 24 23 22 26 26 C 1.34755 * 126.09614 * 84.97707 * 22 21 19 27 27 C 1.50865 * 127.76645 * 0.13079 * 26 22 21 28 28 C 1.53441 * 108.17813 * 164.19279 * 27 26 22 29 29 C 1.53148 * 109.19114 * 48.55001 * 28 27 26 30 30 C 1.46586 * 127.54895 * 180.09314 * 25 24 23 31 31 H 1.09000 * 109.46732 * 180.08336 * 1 2 3 32 32 H 1.09003 * 109.47323 * 300.08172 * 1 2 3 33 33 H 1.08997 * 109.46923 * 60.08616 * 1 2 3 34 34 H 1.08999 * 109.58962 * 294.37874 * 4 2 1 35 35 H 1.09006 * 109.58541 * 54.66279 * 4 2 1 36 36 H 0.96998 * 119.99778 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58561 * 173.39412 * 14 5 4 38 38 H 1.09002 * 109.58867 * 293.68177 * 14 5 4 39 39 H 1.09001 * 109.48842 * 185.39884 * 15 14 5 40 40 H 1.09005 * 109.51024 * 65.29971 * 15 14 5 41 41 H 0.96996 * 120.00010 * 25.03037 * 18 16 2 42 42 H 1.09001 * 109.47733 * 59.99918 * 21 19 18 43 43 H 1.08995 * 109.47459 * 299.99906 * 21 19 18 44 44 H 1.08002 * 125.87274 * 0.21840 * 23 22 21 45 45 H 1.08992 * 109.72364 * 44.51807 * 27 26 22 46 46 H 1.08999 * 109.71901 * 283.85845 * 27 26 22 47 47 H 1.09008 * 109.51552 * 288.63979 * 28 27 26 48 48 H 1.08992 * 109.52170 * 168.46864 * 28 27 26 49 49 H 1.08997 * 109.45871 * 170.54072 * 29 28 27 50 50 H 1.08996 * 109.45927 * 50.59216 * 29 28 27 51 51 H 1.09000 * 109.58135 * 282.47402 * 30 25 24 52 52 H 1.08999 * 109.58209 * 42.88476 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8290 1.1697 6 6 4.2935 -0.3782 2.1942 7 1 3.9499 0.4272 2.8262 8 6 5.5350 -0.9567 2.4204 9 7 5.8212 -2.1281 1.8928 10 14 6.7995 -0.0726 3.4734 11 1 6.2357 1.2178 3.9452 12 1 7.1470 -0.9179 4.6439 13 1 8.0207 0.1851 2.6688 14 6 4.1053 -1.4266 -0.0305 15 6 3.5709 -0.6947 -1.2657 16 6 2.0409 -0.7231 -1.2482 17 1 1.6970 -1.7574 -1.2351 18 7 1.5266 -0.0531 -2.4452 19 6 1.3980 -0.7386 -3.5985 20 8 1.7077 -1.9103 -3.6452 21 6 0.8695 -0.0492 -4.8299 22 6 0.8252 -1.0290 -5.9742 23 6 1.8159 -1.2057 -6.9481 24 7 1.4192 -2.1446 -7.7715 25 7 0.1667 -2.5937 -7.3473 26 6 -0.1746 -1.8919 -6.2421 27 6 -1.4628 -2.0791 -5.4797 28 6 -2.4350 -2.8663 -6.3683 29 6 -1.7147 -4.0905 -6.9409 30 6 -0.6627 -3.6362 -7.9590 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.7637 -0.1577 2.1389 35 1 1.6033 -1.7206 1.2995 36 1 6.6888 -2.5321 2.0506 37 1 5.1896 -1.3245 0.0140 38 1 3.8396 -2.4824 -0.0851 39 1 3.9337 -1.1893 -2.1667 40 1 3.9157 0.3393 -1.2537 41 1 1.2786 0.8839 -2.4077 42 1 1.5240 0.7828 -5.0897 43 1 -0.1347 0.3262 -4.6334 44 1 2.7485 -0.6642 -7.0078 45 1 -1.8913 -1.1067 -5.2372 46 1 -1.2699 -2.6357 -4.5626 47 1 -2.7782 -2.2307 -7.1847 48 1 -3.2894 -3.1911 -5.7747 49 1 -2.4384 -4.7405 -7.4327 50 1 -1.2274 -4.6360 -6.1329 51 1 -1.1578 -3.2367 -8.8440 52 1 -0.0368 -4.4835 -8.2391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942147960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:02 Heat of formation + Delta-G solvation = 21.218035 kcal Electronic energy + Delta-G solvation = -31181.137821 eV Core-core repulsion = 27180.929786 eV Total energy + Delta-G solvation = -4000.208035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.53050 -40.86530 -39.08666 -37.38916 -36.11942 -34.34536 -34.04800 -32.90745 -31.92990 -31.24286 -30.85472 -27.67213 -27.39045 -26.35103 -25.12149 -23.87832 -23.12415 -22.62361 -21.81930 -21.22562 -20.60348 -19.65995 -18.74080 -17.83353 -17.50689 -17.01303 -16.70327 -16.51879 -16.10709 -15.60017 -15.48414 -15.43320 -15.25661 -15.01204 -14.91815 -14.65368 -14.53177 -14.46867 -14.20239 -13.81642 -13.61108 -13.47666 -13.02608 -13.00124 -12.88236 -12.71083 -12.67519 -12.59266 -12.25028 -12.05289 -12.00642 -11.96725 -11.91524 -11.84737 -11.62774 -11.52734 -11.44006 -11.22300 -10.72813 -10.57717 -10.11884 -9.85956 -9.23976 -8.70980 -7.87642 -5.34544 0.95314 1.46449 1.48033 1.59009 1.63335 1.74862 1.86732 2.51049 2.52286 3.28227 3.45469 3.64548 3.67525 3.79745 3.80605 3.82784 3.99681 4.07929 4.15946 4.22105 4.31252 4.32066 4.41654 4.42270 4.50329 4.58924 4.63272 4.72415 4.75706 4.80904 4.82161 4.87535 4.89898 4.94123 4.96430 5.03771 5.06465 5.09219 5.14670 5.21952 5.26699 5.29151 5.34548 5.41651 5.54688 5.63630 5.68433 5.71528 5.74130 6.17516 6.37855 6.78988 6.80881 7.12607 7.51768 7.83830 8.36957 9.19339 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.002307 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.955260 B =12132.634391 C =12651.525211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.148 3.852 5 N -0.609 5.609 6 C -0.259 4.259 7 H 0.075 0.925 8 C -0.056 4.056 9 N -0.940 5.940 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.184 3.816 15 C -0.131 4.131 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.710 5.710 19 C 0.508 3.492 20 O -0.586 6.586 21 C -0.047 4.047 22 C -0.237 4.237 23 C 0.044 3.956 24 N -0.339 5.339 25 N -0.378 5.378 26 C 0.097 3.903 27 C -0.062 4.062 28 C -0.120 4.120 29 C -0.133 4.133 30 C 0.123 3.877 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.006 0.994 36 H 0.248 0.752 37 H 0.053 0.947 38 H -0.017 1.017 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.193 0.807 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.121 0.879 50 H 0.058 0.942 51 H 0.099 0.901 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.669 5.952 -18.687 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 H 0.099 0.901 4 C 0.022 3.978 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.092 0.908 8 C -0.251 4.251 9 N -0.586 5.586 10 Si 0.797 3.203 11 H -0.184 1.184 12 H -0.221 1.221 13 H -0.220 1.220 14 C 0.057 3.943 15 C -0.171 4.171 16 C 0.067 3.933 17 H 0.067 0.933 18 N -0.362 5.362 19 C 0.296 3.704 20 O -0.466 6.466 21 C -0.088 4.088 22 C -0.249 4.249 23 C -0.141 4.141 24 N -0.160 5.160 25 N -0.162 5.162 26 C -0.031 4.031 27 C -0.101 4.101 28 C -0.158 4.158 29 C -0.171 4.171 30 C 0.003 3.997 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.002 0.998 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.209 0.791 45 H 0.131 0.869 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.118 0.882 49 H 0.139 0.861 50 H 0.077 0.923 51 H 0.117 0.883 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.112 4.232 -19.837 29.277 hybrid contribution 1.527 0.313 1.334 2.051 sum -19.585 4.544 -18.503 27.324 Atomic orbital electron populations 1.21704 0.92494 1.01736 1.03061 1.21746 0.97036 0.99805 0.93374 0.90097 1.21107 0.83380 0.96670 0.96636 1.44351 1.01215 1.71355 1.16295 1.19606 0.98911 1.11619 1.08739 0.90774 1.25900 1.02083 0.96018 1.01116 1.70226 1.22165 1.16259 1.49974 0.85177 0.78894 0.78500 0.77702 1.18426 1.22112 1.21953 1.20439 0.97526 0.91884 0.84452 1.22306 0.96664 1.00643 0.97508 1.20531 0.92015 0.96017 0.84721 0.93259 1.46006 1.65893 1.15029 1.09249 1.21422 0.77003 0.86797 0.85193 1.90709 1.51455 1.19067 1.85342 1.19933 1.05078 0.96558 0.87187 1.19309 0.96594 1.06749 1.02204 1.24148 1.00197 0.96303 0.93438 1.77155 0.96533 1.16731 1.25553 1.48834 1.14387 1.30699 1.22250 1.21249 0.98647 0.93347 0.89903 1.20606 0.88911 1.03398 0.97138 1.21684 0.98056 0.96100 0.99925 1.21996 0.97524 0.99229 0.98399 1.22092 0.91679 0.88524 0.97370 0.93794 0.91334 0.90352 0.91688 0.97594 0.94253 0.92885 0.99843 0.94030 0.91904 0.74811 0.85800 0.85317 0.79050 0.86924 0.90621 0.90217 0.88206 0.86105 0.92343 0.88338 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.03 71.98 0.65 -2.25 16 2 C -0.10 -3.01 2.46 -10.72 -0.03 -3.03 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.15 6.01 5.80 86.36 0.50 6.51 16 5 N -0.61 -31.08 2.99 -699.09 -2.09 -33.18 16 6 C -0.26 -14.26 9.58 84.03 0.81 -13.46 16 7 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 8 C -0.06 -3.20 4.92 84.86 0.42 -2.79 16 9 N -0.94 -57.79 11.20 21.65 0.24 -57.55 16 10 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 14 C 0.18 9.52 5.30 86.36 0.46 9.98 16 15 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 16 C 0.17 5.79 1.88 45.02 0.08 5.88 16 17 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 18 N -0.71 -17.12 4.36 -442.41 -1.93 -19.05 16 19 C 0.51 13.57 7.79 87.65 0.68 14.25 16 20 O -0.59 -22.62 15.70 -3.04 -0.05 -22.66 16 21 C -0.05 -0.82 5.98 29.10 0.17 -0.64 16 22 C -0.24 -5.60 4.59 -20.22 -0.09 -5.70 16 23 C 0.04 1.17 11.97 85.25 1.02 2.19 16 24 N -0.34 -9.88 12.62 -56.80 -0.72 -10.60 16 25 N -0.38 -9.15 4.04 -334.04 -1.35 -10.49 16 26 C 0.10 2.17 6.59 41.28 0.27 2.44 16 27 C -0.06 -0.92 6.02 30.05 0.18 -0.74 16 28 C -0.12 -1.14 5.97 30.79 0.18 -0.95 16 29 C -0.13 -1.46 5.93 30.74 0.18 -1.28 16 30 C 0.12 1.94 7.28 86.46 0.63 2.57 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.28 7.36 -2.39 -0.02 1.26 16 34 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 35 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.05 3.10 6.06 -2.39 -0.01 3.08 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.41 6.67 8.31 -92.71 -0.77 5.90 16 42 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.13 1.32 7.89 -2.39 -0.02 1.30 16 44 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 45 H 0.11 1.12 7.94 -2.39 -0.02 1.10 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 0.63 8.12 -2.38 -0.02 0.61 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 51 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -82.43 407.94 2.57 -79.86 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.14 Total: 18.48 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.30 Total: 7.78 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.85 Total: -130.87 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -82.43 2.57 -79.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942147960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.078 kcal (2) G-P(sol) polarization free energy of solvation -82.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds