Wall clock time and date at job start Wed Apr 1 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.49941 * 2 1 4 4 C 1.53196 * 109.52242 * 120.08018 * 2 1 3 5 5 N 1.46921 * 108.77325 * 174.60173 * 4 2 1 6 6 C 1.36940 * 120.63082 * 126.37153 * 5 4 2 7 7 H 1.08006 * 119.99864 * 332.63110 * 6 5 4 8 8 C 1.38811 * 120.00119 * 152.62964 * 6 5 4 9 9 N 1.31620 * 119.99607 * 159.37387 * 8 6 5 10 10 Si 1.86800 * 120.00242 * 339.36925 * 8 6 5 11 11 H 1.48502 * 109.46752 * 92.92790 * 10 8 6 12 12 H 1.48498 * 109.47374 * 212.93472 * 10 8 6 13 13 H 1.48504 * 109.46830 * 332.93531 * 10 8 6 14 14 C 1.46930 * 118.74256 * 306.39459 * 5 4 2 15 15 C 1.53190 * 108.77510 * 53.60750 * 14 5 4 16 16 C 1.53039 * 109.49782 * 239.93387 * 2 1 3 17 17 H 1.08996 * 109.46313 * 298.65512 * 16 2 1 18 18 N 1.46502 * 109.45803 * 58.63269 * 16 2 1 19 19 C 1.34777 * 119.99872 * 204.72190 * 18 16 2 20 20 O 1.21609 * 119.99931 * 0.27784 * 19 18 16 21 21 C 1.47425 * 120.00040 * 180.27647 * 19 18 16 22 22 C 1.38043 * 126.41733 * 0.02670 * 21 19 18 23 23 N 1.34252 * 107.42024 * 179.97438 * 22 21 19 24 24 C 1.46507 * 125.75504 * 179.97438 * 23 22 21 25 25 N 1.39935 * 108.49350 * 359.97438 * 23 22 21 26 26 C 1.30451 * 108.89323 * 359.73480 * 25 23 22 27 27 C 1.50700 * 125.98429 * 180.26439 * 26 25 23 28 28 C 1.53777 * 113.61850 * 37.67185 * 27 26 25 29 29 C 1.53778 * 87.08326 * 220.01657 * 28 27 26 30 30 C 1.53777 * 113.61774 * 300.16953 * 27 26 25 31 31 H 1.08998 * 109.47349 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47913 * 300.06607 * 1 2 3 33 33 H 1.09002 * 109.47508 * 60.06638 * 1 2 3 34 34 H 1.09003 * 109.58549 * 294.38933 * 4 2 1 35 35 H 1.08994 * 109.58415 * 54.81692 * 4 2 1 36 36 H 0.97003 * 119.99534 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.58772 * 173.40114 * 14 5 4 38 38 H 1.09005 * 109.58199 * 293.81910 * 14 5 4 39 39 H 1.08995 * 109.49505 * 185.41709 * 15 14 5 40 40 H 1.08997 * 109.49465 * 65.31682 * 15 14 5 41 41 H 0.96994 * 120.00111 * 24.99842 * 18 16 2 42 42 H 1.07999 * 126.28673 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.46492 * 89.99743 * 24 23 22 44 44 H 1.09003 * 109.46890 * 209.99555 * 24 23 22 45 45 H 1.08998 * 109.46674 * 330.00114 * 24 23 22 46 46 H 1.09003 * 112.84650 * 168.97752 * 27 26 25 47 47 H 1.08998 * 113.61335 * 334.56740 * 28 27 26 48 48 H 1.09008 * 113.61338 * 105.46562 * 28 27 26 49 49 H 1.09004 * 113.61348 * 270.88574 * 29 28 27 50 50 H 1.08992 * 113.69287 * 139.99063 * 29 28 27 51 51 H 1.08998 * 113.61926 * 254.53443 * 30 27 26 52 52 H 1.09003 * 113.61019 * 25.35297 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5051 -0.8283 1.1690 6 6 4.2942 -0.3775 2.1933 7 1 3.9450 0.4191 2.8337 8 6 5.5430 -0.9442 2.4088 9 7 6.4559 -0.2852 3.0903 10 14 5.9275 -2.6421 1.7315 11 1 6.5620 -2.5099 0.3953 12 1 6.8563 -3.3441 2.6533 13 1 4.6699 -3.4219 1.6072 14 6 4.1059 -1.4255 -0.0316 15 6 3.5708 -0.6939 -1.2666 16 6 2.0407 -0.7228 -1.2485 17 1 1.6974 -1.7571 -1.2353 18 7 1.5258 -0.0527 -2.4453 19 6 1.4031 -0.7365 -3.6002 20 8 1.7149 -1.9109 -3.6476 21 6 0.8907 -0.0606 -4.8061 22 6 0.5002 1.2600 -4.9019 23 7 0.1011 1.4703 -6.1664 24 6 -0.3954 2.7379 -6.7077 25 7 0.2393 0.2746 -6.8801 26 6 0.7140 -0.6414 -6.0819 27 6 1.0168 -2.0699 -6.4543 28 6 1.6038 -2.2272 -7.8669 29 6 0.7243 -3.4808 -8.0076 30 6 -0.2089 -2.8473 -6.9623 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3635 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7643 -0.1580 2.1389 35 1 1.6063 -1.7216 1.2978 36 1 7.3284 -0.6814 3.2412 37 1 5.1901 -1.3230 0.0127 38 1 3.8386 -2.4808 -0.0875 39 1 3.9333 -1.1883 -2.1677 40 1 3.9154 0.3401 -1.2546 41 1 1.2771 0.8840 -2.4075 42 1 0.5135 1.9898 -4.1060 43 1 0.4402 3.3173 -7.1004 44 1 -1.1067 2.5371 -7.5089 45 1 -0.8890 3.3023 -5.9165 46 1 1.5803 -2.5976 -5.6847 47 1 1.3273 -1.4213 -8.5468 48 1 2.6727 -2.4406 -7.8743 49 1 1.2086 -4.3948 -7.6637 50 1 0.2686 -3.5878 -8.9919 51 1 -0.6035 -3.5614 -6.2394 52 1 -0.9816 -2.2108 -7.3935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942194810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:04 Heat of formation + Delta-G solvation = 79.299569 kcal Electronic energy + Delta-G solvation = -31296.113400 eV Core-core repulsion = 27298.423969 eV Total energy + Delta-G solvation = -3997.689431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.70860 -39.53520 -38.58631 -37.66658 -34.65026 -33.54099 -32.73121 -31.60607 -30.93519 -29.66735 -28.10822 -26.38757 -25.69337 -25.64882 -24.68580 -22.79572 -21.91898 -21.42905 -20.84914 -20.13163 -19.48614 -18.94089 -17.78023 -16.71863 -16.24699 -15.98264 -15.89989 -15.56342 -15.20983 -14.88909 -14.58812 -14.38990 -14.06035 -13.64847 -13.48986 -13.42262 -13.22146 -13.10472 -12.99051 -12.73322 -12.56508 -12.54189 -12.20424 -12.07569 -11.92060 -11.63056 -11.53740 -11.25750 -10.96798 -10.83035 -10.60411 -10.58101 -10.52819 -10.43201 -10.12308 -9.96170 -9.87590 -9.53512 -9.49959 -9.46505 -8.92021 -8.67481 -8.53519 -6.96737 -5.93413 -3.29266 1.30483 2.01305 2.06391 3.37497 3.39619 3.52440 3.53454 3.56989 4.04774 4.29109 4.52363 4.55199 4.56298 4.61493 4.69137 4.86351 4.88921 4.93411 4.96280 5.00389 5.15637 5.29637 5.30372 5.34030 5.37220 5.47026 5.58238 5.65998 5.76406 5.77243 5.79750 5.87571 5.88038 5.92340 6.05604 6.09591 6.12083 6.17720 6.25555 6.30942 6.39275 6.44381 6.48623 6.54277 6.61774 6.68669 6.73297 6.84531 6.96797 7.37965 7.74532 7.97526 8.33869 8.46398 8.95326 9.73930 10.11511 11.22437 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002774 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.599429 B =10091.979780 C =11119.028610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.085 0.915 8 C 0.024 3.976 9 N -0.909 5.909 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.129 3.871 15 C -0.141 4.141 16 C 0.159 3.841 17 H 0.084 0.916 18 N -0.721 5.721 19 C 0.592 3.408 20 O -0.541 6.541 21 C -0.281 4.281 22 C 0.095 3.905 23 N -0.364 5.364 24 C 0.098 3.902 25 N -0.299 5.299 26 C 0.146 3.854 27 C -0.043 4.043 28 C -0.130 4.130 29 C -0.140 4.140 30 C -0.125 4.125 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.391 0.609 42 H 0.182 0.818 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.132 0.868 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.672 4.618 -21.260 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.330 5.330 6 C -0.388 4.388 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.552 5.552 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.002 3.998 15 C -0.182 4.182 16 C 0.056 3.944 17 H 0.102 0.898 18 N -0.370 5.370 19 C 0.379 3.621 20 O -0.420 6.420 21 C -0.296 4.296 22 C -0.056 4.056 23 N -0.142 5.142 24 C -0.043 4.043 25 N -0.120 5.120 26 C -0.022 4.022 27 C -0.063 4.063 28 C -0.168 4.168 29 C -0.178 4.178 30 C -0.163 4.163 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.225 0.775 42 H 0.199 0.801 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.150 0.850 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.740 4.211 -22.423 28.298 hybrid contribution 0.514 -0.235 0.539 0.781 sum -16.226 3.976 -21.884 27.532 Atomic orbital electron populations 1.21758 0.95500 1.01709 1.00952 1.21959 0.94776 1.00831 0.96102 0.90692 1.20916 0.84399 0.97035 0.94531 1.44402 1.00738 1.71865 1.15989 1.18905 0.97813 1.13955 1.08160 0.89692 1.25266 0.96416 0.98068 0.97762 1.69839 1.04435 1.37060 1.43864 0.86973 0.77818 0.86953 0.77066 1.21555 1.23184 1.19427 1.21320 0.98128 0.94762 0.85545 1.22399 0.94619 1.01843 0.99291 1.20979 0.93828 0.97151 0.82467 0.89795 1.46058 1.66622 1.14060 1.10275 1.17222 0.77124 0.85965 0.81779 1.90715 1.50934 1.15821 1.84481 1.20375 1.18641 0.93983 0.96566 1.23070 0.96736 0.97197 0.88591 1.48282 1.48741 1.09792 1.07347 1.21972 1.00624 0.80560 1.01155 1.77104 1.24788 0.90506 1.19577 1.22227 0.94322 0.95783 0.89826 1.21418 0.99046 0.87477 0.98340 1.22950 0.99640 0.98322 0.95876 1.22795 0.98017 0.97658 0.99285 1.22894 0.96126 0.98967 0.98360 0.92824 0.92600 0.93383 0.91481 0.95688 0.92789 0.90790 0.95453 0.92213 0.91743 0.77518 0.80148 0.90273 0.88966 0.89094 0.85009 0.89702 0.91278 0.89896 0.91418 0.91089 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.03 37.15 0.34 -1.36 16 2 C -0.12 -1.75 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.00 5.80 -3.71 -0.02 2.98 16 5 N -0.61 -14.27 2.77 -172.32 -0.48 -14.74 16 6 C -0.26 -7.20 10.03 -15.06 -0.15 -7.36 16 7 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 8 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 9 N -0.91 -27.90 13.97 55.49 0.78 -27.12 16 10 Si 0.88 22.78 24.35 -169.99 -4.14 18.64 16 11 H -0.29 -7.25 6.62 56.52 0.37 -6.87 16 12 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 13 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 14 C 0.13 2.88 4.20 -3.71 -0.02 2.86 16 15 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 16 C 0.16 2.55 1.88 -67.89 -0.13 2.42 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.72 -9.40 4.35 -54.84 -0.24 -9.63 16 19 C 0.59 8.70 7.78 -12.52 -0.10 8.60 16 20 O -0.54 -9.77 14.38 5.27 0.08 -9.70 16 21 C -0.28 -3.53 6.13 -105.07 -0.64 -4.17 16 22 C 0.10 0.86 10.99 -16.56 -0.18 0.68 16 23 N -0.36 -3.31 3.98 -67.59 -0.27 -3.58 16 24 C 0.10 0.42 11.44 59.85 0.68 1.11 16 25 N -0.30 -3.58 12.09 33.90 0.41 -3.17 16 26 C 0.15 1.89 6.32 -82.02 -0.52 1.37 16 27 C -0.04 -0.52 3.95 -90.96 -0.36 -0.88 16 28 C -0.13 -1.35 7.62 -25.92 -0.20 -1.55 16 29 C -0.14 -1.27 8.08 -25.92 -0.21 -1.48 16 30 C -0.13 -1.31 7.63 -25.92 -0.20 -1.51 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 34 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.07 1.82 4.49 -51.93 -0.23 1.59 16 38 H 0.03 0.62 7.08 -51.93 -0.37 0.26 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 3.91 7.23 -40.82 -0.30 3.62 16 42 H 0.18 0.92 7.46 -52.49 -0.39 0.53 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.13 1.88 6.03 -51.93 -0.31 1.57 16 47 H 0.08 0.90 7.77 -51.93 -0.40 0.49 16 48 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -34.80 403.70 -8.66 -43.46 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.72 Total: 2.21 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.17 Total: -2.45 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.20 Total: -58.25 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.80 -8.66 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.760 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds