Wall clock time and date at job start Wed Apr 1 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.49941 * 2 1 4 4 C 1.53196 * 109.52242 * 120.08018 * 2 1 3 5 5 N 1.46921 * 108.77325 * 174.60173 * 4 2 1 6 6 C 1.36940 * 120.63082 * 126.37153 * 5 4 2 7 7 H 1.08006 * 119.99864 * 332.63110 * 6 5 4 8 8 C 1.38811 * 120.00119 * 152.62964 * 6 5 4 9 9 N 1.31620 * 119.99607 * 159.37387 * 8 6 5 10 10 Si 1.86800 * 120.00242 * 339.36925 * 8 6 5 11 11 H 1.48502 * 109.46752 * 92.92790 * 10 8 6 12 12 H 1.48498 * 109.47374 * 212.93472 * 10 8 6 13 13 H 1.48504 * 109.46830 * 332.93531 * 10 8 6 14 14 C 1.46930 * 118.74256 * 306.39459 * 5 4 2 15 15 C 1.53190 * 108.77510 * 53.60750 * 14 5 4 16 16 C 1.53039 * 109.49782 * 239.93387 * 2 1 3 17 17 H 1.08996 * 109.46313 * 298.65512 * 16 2 1 18 18 N 1.46502 * 109.45803 * 58.63269 * 16 2 1 19 19 C 1.34777 * 119.99872 * 204.72190 * 18 16 2 20 20 O 1.21609 * 119.99931 * 0.27784 * 19 18 16 21 21 C 1.47425 * 120.00040 * 180.27647 * 19 18 16 22 22 C 1.38043 * 126.41733 * 0.02670 * 21 19 18 23 23 N 1.34252 * 107.42024 * 179.97438 * 22 21 19 24 24 C 1.46507 * 125.75504 * 179.97438 * 23 22 21 25 25 N 1.39935 * 108.49350 * 359.97438 * 23 22 21 26 26 C 1.30451 * 108.89323 * 359.73480 * 25 23 22 27 27 C 1.50700 * 125.98429 * 180.26439 * 26 25 23 28 28 C 1.53777 * 113.61850 * 37.67185 * 27 26 25 29 29 C 1.53778 * 87.08326 * 220.01657 * 28 27 26 30 30 C 1.53777 * 113.61774 * 300.16953 * 27 26 25 31 31 H 1.08998 * 109.47349 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47913 * 300.06607 * 1 2 3 33 33 H 1.09002 * 109.47508 * 60.06638 * 1 2 3 34 34 H 1.09003 * 109.58549 * 294.38933 * 4 2 1 35 35 H 1.08994 * 109.58415 * 54.81692 * 4 2 1 36 36 H 0.97003 * 119.99534 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.58772 * 173.40114 * 14 5 4 38 38 H 1.09005 * 109.58199 * 293.81910 * 14 5 4 39 39 H 1.08995 * 109.49505 * 185.41709 * 15 14 5 40 40 H 1.08997 * 109.49465 * 65.31682 * 15 14 5 41 41 H 0.96994 * 120.00111 * 24.99842 * 18 16 2 42 42 H 1.07999 * 126.28673 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.46492 * 89.99743 * 24 23 22 44 44 H 1.09003 * 109.46890 * 209.99555 * 24 23 22 45 45 H 1.08998 * 109.46674 * 330.00114 * 24 23 22 46 46 H 1.09003 * 112.84650 * 168.97752 * 27 26 25 47 47 H 1.08998 * 113.61335 * 334.56740 * 28 27 26 48 48 H 1.09008 * 113.61338 * 105.46562 * 28 27 26 49 49 H 1.09004 * 113.61348 * 270.88574 * 29 28 27 50 50 H 1.08992 * 113.69287 * 139.99063 * 29 28 27 51 51 H 1.08998 * 113.61926 * 254.53443 * 30 27 26 52 52 H 1.09003 * 113.61019 * 25.35297 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5051 -0.8283 1.1690 6 6 4.2942 -0.3775 2.1933 7 1 3.9450 0.4191 2.8337 8 6 5.5430 -0.9442 2.4088 9 7 6.4559 -0.2852 3.0903 10 14 5.9275 -2.6421 1.7315 11 1 6.5620 -2.5099 0.3953 12 1 6.8563 -3.3441 2.6533 13 1 4.6699 -3.4219 1.6072 14 6 4.1059 -1.4255 -0.0316 15 6 3.5708 -0.6939 -1.2666 16 6 2.0407 -0.7228 -1.2485 17 1 1.6974 -1.7571 -1.2353 18 7 1.5258 -0.0527 -2.4453 19 6 1.4031 -0.7365 -3.6002 20 8 1.7149 -1.9109 -3.6476 21 6 0.8907 -0.0606 -4.8061 22 6 0.5002 1.2600 -4.9019 23 7 0.1011 1.4703 -6.1664 24 6 -0.3954 2.7379 -6.7077 25 7 0.2393 0.2746 -6.8801 26 6 0.7140 -0.6414 -6.0819 27 6 1.0168 -2.0699 -6.4543 28 6 1.6038 -2.2272 -7.8669 29 6 0.7243 -3.4808 -8.0076 30 6 -0.2089 -2.8473 -6.9623 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3635 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7643 -0.1580 2.1389 35 1 1.6063 -1.7216 1.2978 36 1 7.3284 -0.6814 3.2412 37 1 5.1901 -1.3230 0.0127 38 1 3.8386 -2.4808 -0.0875 39 1 3.9333 -1.1883 -2.1677 40 1 3.9154 0.3401 -1.2546 41 1 1.2771 0.8840 -2.4075 42 1 0.5135 1.9898 -4.1060 43 1 0.4402 3.3173 -7.1004 44 1 -1.1067 2.5371 -7.5089 45 1 -0.8890 3.3023 -5.9165 46 1 1.5803 -2.5976 -5.6847 47 1 1.3273 -1.4213 -8.5468 48 1 2.6727 -2.4406 -7.8743 49 1 1.2086 -4.3948 -7.6637 50 1 0.2686 -3.5878 -8.9919 51 1 -0.6035 -3.5614 -6.2394 52 1 -0.9816 -2.2108 -7.3935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942194810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:02 Heat of formation + Delta-G solvation = 56.407156 kcal Electronic energy + Delta-G solvation = -31297.106089 eV Core-core repulsion = 27298.423969 eV Total energy + Delta-G solvation = -3998.682120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.51308 -40.78269 -39.40084 -39.08294 -36.22079 -34.26832 -34.16243 -33.34376 -32.28467 -30.88114 -28.74286 -27.79561 -26.97258 -26.51720 -25.86105 -24.06596 -23.10031 -22.99778 -21.75705 -21.35358 -20.65317 -19.78714 -18.90963 -18.52094 -17.48912 -17.13694 -16.66534 -16.57999 -16.34810 -16.08011 -15.93425 -15.74588 -15.20499 -15.11678 -14.85807 -14.73910 -14.31722 -14.09358 -13.96910 -13.82301 -13.59269 -13.54908 -13.36936 -13.31473 -13.27029 -12.88203 -12.80876 -12.65299 -12.19800 -12.09536 -12.06784 -11.90598 -11.71074 -11.63507 -11.46852 -11.40031 -11.33333 -11.24590 -10.79810 -10.61980 -10.29484 -10.02488 -9.56435 -8.95171 -8.17256 -5.47948 0.55247 1.09040 1.29133 1.39654 1.47157 1.48160 2.28527 2.40649 2.49280 3.04315 3.32421 3.35749 3.60117 3.72168 3.81053 3.83053 3.91882 3.95878 4.04569 4.13766 4.23966 4.25988 4.27553 4.43368 4.44158 4.49937 4.59142 4.62688 4.66887 4.72706 4.78113 4.79813 4.83325 4.84401 4.92915 4.95906 4.96790 5.04629 5.05438 5.09950 5.16021 5.21890 5.28664 5.34758 5.41498 5.53173 5.58983 5.64380 5.86922 5.93050 6.13247 6.54724 6.75336 6.90612 7.40228 7.61675 8.03443 9.02379 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002774 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.599429 B =10091.979780 C =11119.028610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.080 0.920 4 C 0.150 3.850 5 N -0.619 5.619 6 C -0.242 4.242 7 H 0.062 0.938 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.936 3.064 11 H -0.281 1.281 12 H -0.309 1.309 13 H -0.266 1.266 14 C 0.126 3.874 15 C -0.130 4.130 16 C 0.171 3.829 17 H 0.065 0.935 18 N -0.705 5.705 19 C 0.592 3.408 20 O -0.584 6.584 21 C -0.318 4.318 22 C 0.122 3.878 23 N -0.358 5.358 24 C 0.087 3.913 25 N -0.319 5.319 26 C 0.129 3.871 27 C -0.054 4.054 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.121 4.121 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.410 0.590 42 H 0.227 0.773 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 6.284 -23.154 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.098 0.902 4 C 0.025 3.975 5 N -0.343 5.343 6 C -0.372 4.372 7 H 0.080 0.920 8 C -0.225 4.225 9 N -0.600 5.600 10 Si 0.766 3.234 11 H -0.209 1.209 12 H -0.238 1.238 13 H -0.190 1.190 14 C 0.000 4.000 15 C -0.171 4.171 16 C 0.066 3.934 17 H 0.084 0.916 18 N -0.355 5.355 19 C 0.381 3.619 20 O -0.465 6.465 21 C -0.333 4.333 22 C -0.032 4.032 23 N -0.135 5.135 24 C -0.052 4.052 25 N -0.141 5.141 26 C -0.037 4.037 27 C -0.074 4.074 28 C -0.164 4.164 29 C -0.167 4.167 30 C -0.159 4.159 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.243 0.757 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.102 0.898 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.348 5.911 -24.374 31.676 hybrid contribution 1.214 -0.621 1.092 1.747 sum -18.134 5.291 -23.282 29.981 Atomic orbital electron populations 1.21705 0.92448 1.02079 1.02899 1.21761 0.97092 1.00006 0.93327 0.90202 1.21161 0.81639 0.97878 0.96813 1.44531 1.02473 1.71867 1.15407 1.18909 0.97788 1.12468 1.08002 0.91983 1.25796 0.96787 1.00844 0.99112 1.69942 1.04988 1.38478 1.46612 0.86082 0.77521 0.83279 0.76555 1.20861 1.23807 1.19026 1.21265 0.96856 0.95040 0.86805 1.22236 0.96758 1.01068 0.97015 1.20637 0.91828 0.96834 0.84132 0.91638 1.45724 1.66117 1.14798 1.08905 1.17547 0.76331 0.85516 0.82474 1.90700 1.52813 1.17816 1.85144 1.20270 1.21637 0.95761 0.95605 1.23632 0.93771 0.96403 0.89355 1.48710 1.47308 1.10154 1.07316 1.22418 1.01421 0.78786 1.02604 1.77046 1.25322 0.91514 1.20200 1.22326 0.94871 0.96124 0.90429 1.21356 0.99862 0.87851 0.98372 1.22906 0.99699 0.98953 0.94796 1.22770 0.97138 0.97126 0.99680 1.22851 0.95755 0.98717 0.98586 0.93285 0.91277 0.90848 0.91372 0.95267 0.93002 0.93262 0.95828 0.92582 0.91617 0.75270 0.75699 0.88984 0.88679 0.85690 0.87642 0.89795 0.91464 0.89504 0.89790 0.91488 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.03 71.98 0.65 -2.07 16 2 C -0.10 -2.82 2.46 -10.72 -0.03 -2.84 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.15 5.52 5.80 86.36 0.50 6.02 16 5 N -0.62 -28.95 2.77 -699.09 -1.94 -30.89 16 6 C -0.24 -13.58 10.03 84.03 0.84 -12.74 16 7 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 8 C -0.03 -1.79 5.23 84.86 0.44 -1.35 16 9 N -0.95 -60.09 13.97 21.65 0.30 -59.78 16 10 Si 0.94 48.16 24.35 68.60 1.67 49.83 16 11 H -0.28 -14.02 6.62 99.48 0.66 -13.36 16 12 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 13 H -0.27 -13.31 6.64 99.48 0.66 -12.65 16 14 C 0.13 5.64 4.20 86.36 0.36 6.00 16 15 C -0.13 -4.77 5.65 30.67 0.17 -4.60 16 16 C 0.17 5.18 1.88 45.02 0.08 5.26 16 17 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 18 N -0.70 -16.63 4.35 -445.67 -1.94 -18.57 16 19 C 0.59 16.74 7.78 86.66 0.67 17.42 16 20 O -0.58 -21.38 14.38 -4.06 -0.06 -21.43 16 21 C -0.32 -7.45 6.13 -20.15 -0.12 -7.57 16 22 C 0.12 1.74 10.99 84.28 0.93 2.66 16 23 N -0.36 -5.31 3.98 -367.77 -1.46 -6.77 16 24 C 0.09 0.39 11.44 127.77 1.46 1.85 16 25 N -0.32 -7.13 12.09 -46.67 -0.56 -7.69 16 26 C 0.13 3.26 6.32 43.51 0.28 3.53 16 27 C -0.05 -1.35 3.95 -11.02 -0.04 -1.39 16 28 C -0.13 -2.59 7.62 31.12 0.24 -2.36 16 29 C -0.13 -2.26 8.08 31.12 0.25 -2.01 16 30 C -0.12 -2.51 7.63 31.12 0.24 -2.27 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.16 7.36 -2.39 -0.02 1.14 16 34 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.05 2.44 4.49 -2.39 -0.01 2.43 16 38 H 0.02 1.08 7.08 -2.38 -0.02 1.06 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 41 H 0.41 6.50 7.23 -92.71 -0.67 5.83 16 42 H 0.23 0.93 7.46 -2.91 -0.02 0.91 16 43 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.11 3.19 6.03 -2.39 -0.01 3.18 16 47 H 0.08 1.74 7.77 -2.39 -0.02 1.72 16 48 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 Total: -1.00 -79.32 403.70 3.09 -76.23 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.15 Total: 15.54 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.93 Total: 3.54 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -5.60 Total: -123.71 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.67 Total: 49.83 kcal Total: -79.32 3.09 -76.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.639 kcal (2) G-P(sol) polarization free energy of solvation -79.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds