Wall clock time and date at job start Wed Apr 1 2020 04:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52356 * 2 1 4 4 C 1.53191 * 109.48593 * 120.09304 * 2 1 3 5 5 N 1.46928 * 108.76425 * 174.60391 * 4 2 1 6 6 C 1.36932 * 120.63391 * 126.35544 * 5 4 2 7 7 H 1.08002 * 120.00304 * 332.65111 * 6 5 4 8 8 C 1.38818 * 119.99978 * 152.63935 * 6 5 4 9 9 N 1.31619 * 119.99877 * 159.34675 * 8 6 5 10 10 Si 1.86797 * 119.99766 * 339.34799 * 8 6 5 11 11 H 1.48501 * 109.47112 * 92.96241 * 10 8 6 12 12 H 1.48508 * 109.46967 * 212.95626 * 10 8 6 13 13 H 1.48493 * 109.47555 * 332.95834 * 10 8 6 14 14 C 1.46930 * 118.73578 * 306.37386 * 5 4 2 15 15 C 1.53197 * 108.77155 * 53.61436 * 14 5 4 16 16 C 1.53039 * 109.31232 * 305.36263 * 15 14 5 17 17 H 1.09005 * 109.46122 * 181.38746 * 16 15 14 18 18 N 1.46500 * 109.45996 * 301.36129 * 16 15 14 19 19 C 1.34787 * 120.00046 * 275.02723 * 18 16 15 20 20 O 1.21273 * 119.99555 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99889 * 180.02562 * 19 18 16 22 22 N 1.46507 * 109.46909 * 180.02562 * 21 19 18 23 23 C 1.35304 * 126.49555 * 264.68661 * 22 21 19 24 24 N 1.30757 * 108.76690 * 179.80384 * 23 22 21 25 25 C 1.33583 * 109.14241 * 0.42721 * 24 23 22 26 26 C 1.35024 * 107.98001 * 359.77369 * 25 24 23 27 27 C 1.50645 * 124.45340 * 179.85758 * 26 25 24 28 28 C 1.53399 * 108.38657 * 343.58008 * 27 26 25 29 29 C 1.53127 * 109.44080 * 49.64767 * 28 27 26 30 30 C 1.50869 * 128.03034 * 179.79194 * 25 24 23 31 31 H 1.09002 * 109.47374 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47243 * 300.07749 * 1 2 3 33 33 H 1.09003 * 109.47374 * 60.08335 * 1 2 3 34 34 H 1.08995 * 109.60551 * 54.80604 * 4 2 1 35 35 H 1.09010 * 109.58029 * 294.37466 * 4 2 1 36 36 H 0.96998 * 119.99736 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58720 * 293.82970 * 14 5 4 38 38 H 1.08997 * 109.70174 * 173.46555 * 14 5 4 39 39 H 1.08998 * 109.49914 * 185.41350 * 15 14 5 40 40 H 1.09002 * 109.52717 * 65.32908 * 15 14 5 41 41 H 0.97005 * 120.00346 * 95.03003 * 18 16 15 42 42 H 1.09005 * 109.47222 * 299.99559 * 21 19 18 43 43 H 1.08997 * 109.47469 * 60.00335 * 21 19 18 44 44 H 1.08003 * 125.61901 * 359.95432 * 23 22 21 45 45 H 1.08998 * 109.68712 * 103.30834 * 27 26 25 46 46 H 1.09000 * 109.68193 * 223.86029 * 27 26 25 47 47 H 1.08997 * 109.47805 * 169.63381 * 28 27 26 48 48 H 1.09001 * 109.48047 * 289.65432 * 28 27 26 49 49 H 1.09000 * 109.46327 * 50.00765 * 29 28 27 50 50 H 1.09004 * 109.45676 * 169.96966 * 29 28 27 51 51 H 1.09000 * 109.67650 * 43.58349 * 30 25 24 52 52 H 1.09001 * 109.67074 * 283.04481 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 1.2495 5 7 3.5044 -0.8291 1.1697 6 6 4.2931 -0.3784 2.1942 7 1 3.9438 0.4181 2.8346 8 6 5.5418 -0.9453 2.4100 9 7 6.4549 -0.2863 3.0914 10 14 5.9260 -2.6434 1.7331 11 1 6.5614 -2.5117 0.3974 12 1 6.8541 -3.3456 2.6556 13 1 4.6683 -3.4228 1.6083 14 6 4.1053 -1.4265 -0.0307 15 6 3.5708 -0.6947 -1.2659 16 6 2.0408 -0.7231 -1.2484 17 1 1.6581 -0.2244 -2.1389 18 7 1.5786 -2.1131 -1.2307 19 6 1.4499 -2.7953 -2.3860 20 8 1.7163 -2.2582 -3.4401 21 6 0.9739 -4.2250 -2.3678 22 7 0.9198 -4.7392 -3.7386 23 6 -0.1668 -4.7705 -4.5441 24 7 0.1751 -5.2957 -5.6917 25 6 1.4701 -5.6216 -5.6557 26 6 1.9520 -5.2814 -4.4411 27 6 3.3775 -5.4897 -4.0009 28 6 4.0388 -6.4884 -4.9592 29 6 3.7810 -6.0547 -6.4050 30 6 2.2992 -6.2569 -6.7444 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.6051 -1.7219 1.2979 35 1 1.7633 -0.1583 2.1389 36 1 7.3275 -0.6823 3.2418 37 1 3.8377 -2.4816 -0.0868 38 1 5.1898 -1.3262 0.0126 39 1 3.9335 -1.1892 -2.1670 40 1 3.9156 0.3393 -1.2544 41 1 1.3651 -2.5426 -0.3875 42 1 1.6641 -4.8304 -1.7800 43 1 -0.0199 -4.2715 -1.9225 44 1 -1.1536 -4.4174 -4.2831 45 1 3.9137 -4.5412 -4.0318 46 1 3.3940 -5.8883 -2.9866 47 1 5.1126 -6.5138 -4.7736 48 1 3.6183 -7.4808 -4.7970 49 1 4.0396 -5.0021 -6.5200 50 1 4.3930 -6.6546 -7.0787 51 1 2.0738 -5.7844 -7.7004 52 1 2.0775 -7.3227 -6.7998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942520477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:19 Heat of formation + Delta-G solvation = 38.425949 kcal Electronic energy + Delta-G solvation = -32024.231623 eV Core-core repulsion = 28024.769780 eV Total energy + Delta-G solvation = -3999.461844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.44363 -40.18005 -38.09398 -36.75946 -34.60867 -34.28954 -32.80608 -31.70154 -30.87527 -30.27345 -29.03327 -27.84945 -26.43443 -25.24239 -23.67793 -22.49285 -22.07196 -21.66294 -21.46039 -20.48227 -19.08953 -18.94304 -17.80604 -17.18210 -16.78116 -15.79836 -15.72451 -15.27583 -15.09532 -14.92199 -14.68615 -14.43135 -14.03189 -13.87327 -13.82638 -13.74903 -13.55561 -13.50938 -13.27712 -12.66821 -12.65870 -12.54372 -12.35829 -12.04513 -11.87921 -11.72089 -11.65013 -11.40809 -11.09478 -11.05632 -11.03813 -10.78136 -10.67054 -10.35674 -10.27805 -10.10817 -9.87485 -9.81519 -9.60706 -9.44525 -9.01069 -8.68887 -8.13230 -7.10162 -6.05140 -3.42065 1.86754 2.41810 2.46835 3.06294 3.22596 3.22814 3.35919 3.39878 4.29729 4.35516 4.42136 4.47115 4.55153 4.63386 4.70159 4.73716 4.79192 4.89754 4.98732 5.11657 5.13954 5.20119 5.30908 5.32294 5.40166 5.49572 5.55928 5.56479 5.71017 5.72093 5.74473 5.80270 5.83291 5.88982 5.89453 6.01792 6.03991 6.11463 6.15365 6.22129 6.28246 6.32117 6.45522 6.50681 6.55422 6.59856 6.72030 6.79096 7.06193 7.42353 7.84210 8.03993 8.08099 8.22269 8.82106 9.60856 9.96924 11.10711 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.003368 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.748375 B = 8310.326764 C = 9899.541841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.088 0.912 4 C 0.155 3.845 5 N -0.604 5.604 6 C -0.263 4.263 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.905 5.905 10 Si 0.884 3.116 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.273 1.273 14 C 0.130 3.870 15 C -0.147 4.147 16 C 0.161 3.839 17 H 0.079 0.921 18 N -0.710 5.710 19 C 0.495 3.505 20 O -0.523 6.523 21 C 0.083 3.917 22 N -0.433 5.433 23 C 0.181 3.819 24 N -0.485 5.485 25 C -0.002 4.002 26 C -0.008 4.008 27 C -0.046 4.046 28 C -0.111 4.111 29 C -0.119 4.119 30 C -0.030 4.030 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.202 0.798 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -10.474 -12.330 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.106 0.894 4 C 0.029 3.971 5 N -0.328 5.328 6 C -0.391 4.391 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.548 5.548 10 Si 0.715 3.285 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.198 1.198 14 C 0.004 3.996 15 C -0.187 4.187 16 C 0.058 3.942 17 H 0.097 0.903 18 N -0.363 5.363 19 C 0.278 3.722 20 O -0.399 6.399 21 C -0.044 4.044 22 N -0.115 5.115 23 C -0.100 4.100 24 N -0.202 5.202 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.085 4.085 28 C -0.149 4.149 29 C -0.157 4.157 30 C -0.068 4.068 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.237 0.763 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.219 0.781 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.765 -10.122 -13.514 20.579 hybrid contribution 0.649 -0.822 0.996 1.445 sum -11.116 -10.944 -12.518 20.001 Atomic orbital electron populations 1.21758 0.95340 1.01324 1.01513 1.21957 0.94926 1.01105 0.96054 0.89395 1.20938 0.84508 0.96422 0.95264 1.44355 1.00592 1.71949 1.15880 1.18901 0.97920 1.14167 1.08151 0.89628 1.25275 0.96391 0.98021 0.97717 1.69832 1.04418 1.37011 1.43541 0.86938 0.77529 0.86977 0.77072 1.21719 1.23116 1.19828 1.21263 0.98114 0.94343 0.85839 1.22397 0.94606 1.02492 0.99177 1.20936 0.94529 0.80172 0.98605 0.90258 1.46112 1.67195 1.14598 1.08407 1.20571 0.78914 0.87975 0.84751 1.90775 1.49288 1.69361 1.30460 1.21705 1.05845 0.94190 0.82710 1.44507 1.09761 1.45145 1.12119 1.24878 0.93234 1.05034 0.86817 1.69941 1.13474 1.16498 1.20308 1.20376 0.91254 1.06805 0.94723 1.20841 0.91616 1.05556 0.94248 1.20117 0.88631 1.00525 0.99182 1.21531 1.00386 0.98500 0.94518 1.21610 0.95672 1.02144 0.96297 1.19888 0.92095 0.99516 0.95329 0.93134 0.92388 0.93101 0.96490 0.91383 0.92669 0.96033 0.91003 0.92351 0.90605 0.76255 0.86370 0.85818 0.78128 0.90223 0.91169 0.90956 0.91486 0.91492 0.91152 0.90700 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.05 37.16 0.34 -1.20 16 2 C -0.12 -1.67 2.67 -90.50 -0.24 -1.91 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.16 2.59 5.50 -3.71 -0.02 2.57 16 5 N -0.60 -13.01 2.77 -172.31 -0.48 -13.48 16 6 C -0.26 -6.93 10.04 -15.06 -0.15 -7.08 16 7 H 0.09 2.42 8.06 -52.49 -0.42 1.99 16 8 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 9 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16 10 Si 0.88 21.45 24.35 -169.99 -4.14 17.31 16 11 H -0.29 -6.90 6.62 56.52 0.37 -6.52 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.27 -6.33 6.63 56.52 0.37 -5.95 16 14 C 0.13 2.63 3.94 -3.71 -0.01 2.62 16 15 C -0.15 -2.53 5.77 -26.61 -0.15 -2.69 16 16 C 0.16 2.33 2.21 -67.89 -0.15 2.18 16 17 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 18 N -0.71 -8.74 3.60 -53.76 -0.19 -8.93 16 19 C 0.49 6.29 7.86 -10.98 -0.09 6.21 16 20 O -0.52 -8.91 16.09 5.56 0.09 -8.82 16 21 C 0.08 0.76 6.48 -5.19 -0.03 0.73 16 22 N -0.43 -5.18 2.23 -115.26 -0.26 -5.44 16 23 C 0.18 2.23 12.57 -89.92 -1.13 1.10 16 24 N -0.48 -7.12 11.25 -10.74 -0.12 -7.24 16 25 C 0.00 -0.03 6.98 -82.89 -0.58 -0.61 16 26 C -0.01 -0.10 6.73 -81.86 -0.55 -0.65 16 27 C -0.05 -0.51 6.06 -27.70 -0.17 -0.68 16 28 C -0.11 -1.01 5.91 -26.46 -0.16 -1.17 16 29 C -0.12 -1.10 5.90 -26.48 -0.16 -1.25 16 30 C -0.03 -0.32 6.30 -27.62 -0.17 -0.50 16 31 H 0.05 0.49 7.54 -51.93 -0.39 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.26 6.64 -51.93 -0.34 -0.08 16 35 H 0.07 1.17 7.93 -51.92 -0.41 0.76 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.02 0.43 6.67 -51.93 -0.35 0.08 16 38 H 0.07 1.66 4.50 -51.93 -0.23 1.43 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.40 4.33 6.73 -40.82 -0.27 4.06 16 42 H 0.12 0.92 7.95 -51.93 -0.41 0.51 16 43 H 0.12 0.70 8.13 -51.93 -0.42 0.27 16 44 H 0.20 1.72 8.06 -52.48 -0.42 1.30 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 49 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -34.29 397.55 -10.60 -44.89 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.75 Total: 3.58 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.52 Total: -1.71 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.27 Total: -61.24 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.29 -10.60 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942520477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.318 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds