Wall clock time and date at job start Wed Apr 1 2020 04:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52356 * 2 1 4 4 C 1.53191 * 109.48593 * 120.09304 * 2 1 3 5 5 N 1.46928 * 108.76425 * 174.60391 * 4 2 1 6 6 C 1.36932 * 120.63391 * 126.35544 * 5 4 2 7 7 H 1.08002 * 120.00304 * 332.65111 * 6 5 4 8 8 C 1.38818 * 119.99978 * 152.63935 * 6 5 4 9 9 N 1.31619 * 119.99877 * 159.34675 * 8 6 5 10 10 Si 1.86797 * 119.99766 * 339.34799 * 8 6 5 11 11 H 1.48501 * 109.47112 * 92.96241 * 10 8 6 12 12 H 1.48508 * 109.46967 * 212.95626 * 10 8 6 13 13 H 1.48493 * 109.47555 * 332.95834 * 10 8 6 14 14 C 1.46930 * 118.73578 * 306.37386 * 5 4 2 15 15 C 1.53197 * 108.77155 * 53.61436 * 14 5 4 16 16 C 1.53039 * 109.31232 * 305.36263 * 15 14 5 17 17 H 1.09005 * 109.46122 * 181.38746 * 16 15 14 18 18 N 1.46500 * 109.45996 * 301.36129 * 16 15 14 19 19 C 1.34787 * 120.00046 * 275.02723 * 18 16 15 20 20 O 1.21273 * 119.99555 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99889 * 180.02562 * 19 18 16 22 22 N 1.46507 * 109.46909 * 180.02562 * 21 19 18 23 23 C 1.35304 * 126.49555 * 264.68661 * 22 21 19 24 24 N 1.30757 * 108.76690 * 179.80384 * 23 22 21 25 25 C 1.33583 * 109.14241 * 0.42721 * 24 23 22 26 26 C 1.35024 * 107.98001 * 359.77369 * 25 24 23 27 27 C 1.50645 * 124.45340 * 179.85758 * 26 25 24 28 28 C 1.53399 * 108.38657 * 343.58008 * 27 26 25 29 29 C 1.53127 * 109.44080 * 49.64767 * 28 27 26 30 30 C 1.50869 * 128.03034 * 179.79194 * 25 24 23 31 31 H 1.09002 * 109.47374 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47243 * 300.07749 * 1 2 3 33 33 H 1.09003 * 109.47374 * 60.08335 * 1 2 3 34 34 H 1.08995 * 109.60551 * 54.80604 * 4 2 1 35 35 H 1.09010 * 109.58029 * 294.37466 * 4 2 1 36 36 H 0.96998 * 119.99736 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58720 * 293.82970 * 14 5 4 38 38 H 1.08997 * 109.70174 * 173.46555 * 14 5 4 39 39 H 1.08998 * 109.49914 * 185.41350 * 15 14 5 40 40 H 1.09002 * 109.52717 * 65.32908 * 15 14 5 41 41 H 0.97005 * 120.00346 * 95.03003 * 18 16 15 42 42 H 1.09005 * 109.47222 * 299.99559 * 21 19 18 43 43 H 1.08997 * 109.47469 * 60.00335 * 21 19 18 44 44 H 1.08003 * 125.61901 * 359.95432 * 23 22 21 45 45 H 1.08998 * 109.68712 * 103.30834 * 27 26 25 46 46 H 1.09000 * 109.68193 * 223.86029 * 27 26 25 47 47 H 1.08997 * 109.47805 * 169.63381 * 28 27 26 48 48 H 1.09001 * 109.48047 * 289.65432 * 28 27 26 49 49 H 1.09000 * 109.46327 * 50.00765 * 29 28 27 50 50 H 1.09004 * 109.45676 * 169.96966 * 29 28 27 51 51 H 1.09000 * 109.67650 * 43.58349 * 30 25 24 52 52 H 1.09001 * 109.67074 * 283.04481 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 1.2495 5 7 3.5044 -0.8291 1.1697 6 6 4.2931 -0.3784 2.1942 7 1 3.9438 0.4181 2.8346 8 6 5.5418 -0.9453 2.4100 9 7 6.4549 -0.2863 3.0914 10 14 5.9260 -2.6434 1.7331 11 1 6.5614 -2.5117 0.3974 12 1 6.8541 -3.3456 2.6556 13 1 4.6683 -3.4228 1.6083 14 6 4.1053 -1.4265 -0.0307 15 6 3.5708 -0.6947 -1.2659 16 6 2.0408 -0.7231 -1.2484 17 1 1.6581 -0.2244 -2.1389 18 7 1.5786 -2.1131 -1.2307 19 6 1.4499 -2.7953 -2.3860 20 8 1.7163 -2.2582 -3.4401 21 6 0.9739 -4.2250 -2.3678 22 7 0.9198 -4.7392 -3.7386 23 6 -0.1668 -4.7705 -4.5441 24 7 0.1751 -5.2957 -5.6917 25 6 1.4701 -5.6216 -5.6557 26 6 1.9520 -5.2814 -4.4411 27 6 3.3775 -5.4897 -4.0009 28 6 4.0388 -6.4884 -4.9592 29 6 3.7810 -6.0547 -6.4050 30 6 2.2992 -6.2569 -6.7444 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.6051 -1.7219 1.2979 35 1 1.7633 -0.1583 2.1389 36 1 7.3275 -0.6823 3.2418 37 1 3.8377 -2.4816 -0.0868 38 1 5.1898 -1.3262 0.0126 39 1 3.9335 -1.1892 -2.1670 40 1 3.9156 0.3393 -1.2544 41 1 1.3651 -2.5426 -0.3875 42 1 1.6641 -4.8304 -1.7800 43 1 -0.0199 -4.2715 -1.9225 44 1 -1.1536 -4.4174 -4.2831 45 1 3.9137 -4.5412 -4.0318 46 1 3.3940 -5.8883 -2.9866 47 1 5.1126 -6.5138 -4.7736 48 1 3.6183 -7.4808 -4.7970 49 1 4.0396 -5.0021 -6.5200 50 1 4.3930 -6.6546 -7.0787 51 1 2.0738 -5.7844 -7.7004 52 1 2.0775 -7.3227 -6.7998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942520477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:17 Heat of formation + Delta-G solvation = 17.998894 kcal Electronic energy + Delta-G solvation = -32025.117407 eV Core-core repulsion = 28024.769780 eV Total energy + Delta-G solvation = -4000.347627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.31732 -41.32214 -39.37186 -37.54283 -36.13932 -35.19069 -34.08741 -33.40277 -32.21296 -31.25897 -29.86523 -28.76825 -27.76617 -26.80690 -24.49993 -23.83265 -23.23961 -22.93586 -22.48579 -21.39184 -20.34250 -19.81283 -18.92050 -18.61056 -17.95641 -17.29017 -16.67470 -16.59480 -16.24872 -16.00463 -15.70482 -15.53178 -15.32113 -15.15740 -14.93992 -14.83269 -14.67051 -14.40403 -14.22214 -14.18024 -13.88826 -13.47927 -13.46235 -13.35707 -13.09772 -12.92119 -12.85327 -12.81747 -12.27760 -12.11423 -11.93373 -11.85760 -11.80674 -11.77418 -11.68469 -11.44602 -11.35802 -11.26773 -10.78493 -10.72993 -10.39359 -10.11058 -9.03778 -8.93096 -8.17086 -5.48911 0.96221 1.29713 1.37969 1.46571 1.48116 1.66150 2.13156 2.28440 2.41030 3.02590 3.33140 3.48648 3.58616 3.70026 3.73488 3.79333 3.91586 3.95168 3.96743 4.05330 4.09693 4.19488 4.21137 4.35632 4.38078 4.53077 4.54378 4.57050 4.60347 4.68262 4.72021 4.79043 4.83654 4.90242 4.93227 4.98896 5.01092 5.07931 5.13950 5.14695 5.20104 5.24126 5.30748 5.41087 5.42275 5.46710 5.54270 5.84300 5.86070 6.12845 6.21696 6.47985 6.90642 7.11972 7.14330 7.61727 8.01081 9.02723 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.003368 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.748375 B = 8310.326764 C = 9899.541841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 H 0.070 0.930 4 C 0.150 3.850 5 N -0.616 5.616 6 C -0.245 4.245 7 H 0.054 0.946 8 C -0.037 4.037 9 N -0.959 5.959 10 Si 0.946 3.054 11 H -0.287 1.287 12 H -0.314 1.314 13 H -0.247 1.247 14 C 0.132 3.868 15 C -0.139 4.139 16 C 0.172 3.828 17 H 0.077 0.923 18 N -0.701 5.701 19 C 0.498 3.502 20 O -0.570 6.570 21 C 0.084 3.916 22 N -0.436 5.436 23 C 0.180 3.820 24 N -0.524 5.524 25 C -0.028 4.028 26 C -0.022 4.022 27 C -0.046 4.046 28 C -0.108 4.108 29 C -0.115 4.115 30 C -0.031 4.031 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.140 0.860 43 H 0.170 0.830 44 H 0.234 0.766 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 -12.804 -12.772 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.129 4.129 3 H 0.088 0.912 4 C 0.026 3.974 5 N -0.341 5.341 6 C -0.375 4.375 7 H 0.071 0.929 8 C -0.232 4.232 9 N -0.605 5.605 10 Si 0.775 3.225 11 H -0.215 1.215 12 H -0.244 1.244 13 H -0.171 1.171 14 C 0.007 3.993 15 C -0.180 4.180 16 C 0.067 3.933 17 H 0.095 0.905 18 N -0.355 5.355 19 C 0.283 3.717 20 O -0.448 6.448 21 C -0.041 4.041 22 N -0.118 5.118 23 C -0.101 4.101 24 N -0.243 5.243 25 C -0.157 4.157 26 C -0.137 4.137 27 C -0.084 4.084 28 C -0.146 4.146 29 C -0.153 4.153 30 C -0.069 4.069 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.157 0.843 43 H 0.187 0.813 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.111 0.889 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.145 -12.477 -13.959 23.465 hybrid contribution 1.290 0.035 1.110 1.703 sum -12.855 -12.442 -12.849 22.026 Atomic orbital electron populations 1.21693 0.92231 1.02902 1.02263 1.21798 0.97312 0.99585 0.94189 0.91171 1.21178 0.81550 0.98314 0.96376 1.44444 1.02422 1.72053 1.15134 1.18856 0.98079 1.12548 1.08014 0.92867 1.25918 0.96579 1.01513 0.99147 1.69976 1.04985 1.38732 1.46785 0.85928 0.77996 0.82528 0.76037 1.21450 1.24362 1.17084 1.21219 0.96341 0.95426 0.86351 1.22279 0.96988 1.01152 0.97547 1.20672 0.92213 0.81743 0.98695 0.90486 1.45959 1.66777 1.13636 1.09091 1.21152 0.77621 0.89100 0.83783 1.90773 1.51248 1.70693 1.32124 1.21985 1.08882 0.91445 0.81813 1.44673 1.09311 1.44756 1.13033 1.25550 0.94463 1.03833 0.86298 1.69920 1.14295 1.18089 1.21956 1.20886 0.91453 1.07452 0.95890 1.21174 0.92522 1.05620 0.94424 1.20167 0.87613 1.00134 1.00486 1.21542 1.01078 0.98269 0.93708 1.21590 0.94967 1.01523 0.97202 1.19970 0.92743 0.99823 0.94401 0.91119 0.91627 0.92462 0.93263 0.92149 0.93104 0.94322 0.94200 0.92565 0.92042 0.74886 0.84260 0.81287 0.75000 0.92180 0.89790 0.89595 0.90619 0.93186 0.88921 0.91418 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.05 71.98 0.65 -1.72 16 2 C -0.11 -2.75 2.67 -10.72 -0.03 -2.78 16 3 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.15 4.65 5.50 86.36 0.48 5.12 16 5 N -0.62 -25.82 2.77 -699.07 -1.94 -27.75 16 6 C -0.25 -13.08 10.04 84.04 0.84 -12.23 16 7 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 8 C -0.04 -2.08 5.23 84.86 0.44 -1.64 16 9 N -0.96 -59.04 13.97 21.65 0.30 -58.74 16 10 Si 0.95 44.38 24.35 68.60 1.67 46.05 16 11 H -0.29 -13.21 6.62 99.48 0.66 -12.55 16 12 H -0.31 -15.23 7.11 99.48 0.71 -14.53 16 13 H -0.25 -10.39 6.63 99.48 0.66 -9.73 16 14 C 0.13 5.13 3.94 86.36 0.34 5.48 16 15 C -0.14 -4.68 5.77 30.67 0.18 -4.50 16 16 C 0.17 4.55 2.21 45.02 0.10 4.65 16 17 H 0.08 2.17 7.58 -2.38 -0.02 2.15 16 18 N -0.70 -14.53 3.60 -442.40 -1.59 -16.12 16 19 C 0.50 10.97 7.86 87.65 0.69 11.66 16 20 O -0.57 -18.36 16.09 -3.01 -0.05 -18.41 16 21 C 0.08 1.18 6.48 85.63 0.56 1.74 16 22 N -0.44 -9.20 2.23 -518.56 -1.16 -10.36 16 23 C 0.18 4.00 12.57 180.10 2.26 6.26 16 24 N -0.52 -14.89 11.25 -187.89 -2.11 -17.00 16 25 C -0.03 -0.75 6.98 41.61 0.29 -0.46 16 26 C -0.02 -0.54 6.73 41.14 0.28 -0.26 16 27 C -0.05 -0.93 6.06 29.96 0.18 -0.75 16 28 C -0.11 -1.74 5.91 30.77 0.18 -1.56 16 29 C -0.11 -1.98 5.90 30.75 0.18 -1.80 16 30 C -0.03 -0.65 6.30 30.02 0.19 -0.46 16 31 H 0.07 1.00 7.54 -2.39 -0.02 0.98 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 1.25 6.64 -2.39 -0.02 1.24 16 35 H 0.06 1.97 7.93 -2.38 -0.02 1.95 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.04 1.39 6.67 -2.39 -0.02 1.37 16 38 H 0.04 1.82 4.50 -2.39 -0.01 1.81 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.41 6.74 6.73 -92.70 -0.62 6.12 16 42 H 0.14 1.45 7.95 -2.38 -0.02 1.43 16 43 H 0.17 0.85 8.13 -2.39 -0.02 0.83 16 44 H 0.23 3.20 8.06 -2.91 -0.02 3.17 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 1.43 7.99 -2.39 -0.02 1.41 16 47 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 49 H 0.05 1.02 8.11 -2.39 -0.02 1.00 16 50 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -78.56 397.55 3.14 -75.42 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.20 Total: 20.16 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 7.81 Total: 6.75 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -6.49 Total: -129.97 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -78.56 3.14 -75.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942520477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.420 kcal (2) G-P(sol) polarization free energy of solvation -78.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds