Wall clock time and date at job start Wed Apr 1 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49975 * 2 1 4 4 C 1.53195 * 109.49733 * 120.06101 * 2 1 3 5 5 N 1.46923 * 108.77416 * 174.58745 * 4 2 1 6 6 C 1.36941 * 120.63258 * 126.37168 * 5 4 2 7 7 H 1.08005 * 119.99741 * 332.62609 * 6 5 4 8 8 C 1.38808 * 120.00144 * 152.62695 * 6 5 4 9 9 N 1.31622 * 120.00074 * 159.37218 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 339.36867 * 8 6 5 11 11 H 1.48504 * 109.46685 * 92.92930 * 10 8 6 12 12 H 1.48501 * 109.47365 * 212.93054 * 10 8 6 13 13 H 1.48499 * 109.47156 * 332.93104 * 10 8 6 14 14 C 1.46929 * 118.73867 * 306.38724 * 5 4 2 15 15 C 1.53193 * 108.77142 * 53.61419 * 14 5 4 16 16 C 1.53039 * 109.49660 * 239.93038 * 2 1 3 17 17 H 1.09004 * 109.46000 * 58.66701 * 16 2 1 18 18 N 1.46493 * 109.46106 * 298.70181 * 16 2 1 19 19 C 1.34778 * 119.99649 * 154.99783 * 18 16 2 20 20 O 1.21566 * 120.00402 * 0.02562 * 19 18 16 21 21 C 1.47718 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.32202 * 126.67455 * 359.69340 * 21 19 18 23 23 N 1.28850 * 110.14961 * 179.81416 * 22 21 19 24 24 C 1.46495 * 124.98064 * 180.11349 * 23 22 21 25 25 C 1.34318 * 110.03791 * 0.38650 * 23 22 21 26 26 C 1.35578 * 107.21684 * 359.84251 * 25 23 22 27 27 C 1.50378 * 124.62023 * 179.80086 * 26 25 23 28 28 C 1.53476 * 108.28496 * 343.74835 * 27 26 25 29 29 C 1.53097 * 109.51167 * 49.48418 * 28 27 26 30 30 C 1.50710 * 128.90625 * 179.88181 * 25 23 22 31 31 H 1.09004 * 109.46910 * 300.00360 * 1 2 3 32 32 H 1.08990 * 109.46820 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46800 * 60.00372 * 1 2 3 34 34 H 1.08999 * 109.58418 * 294.37478 * 4 2 1 35 35 H 1.09000 * 109.58626 * 54.65582 * 4 2 1 36 36 H 0.96994 * 119.99948 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58388 * 173.39819 * 14 5 4 38 38 H 1.08990 * 109.58854 * 293.82625 * 14 5 4 39 39 H 1.09007 * 109.49974 * 65.31520 * 15 14 5 40 40 H 1.09000 * 109.49341 * 185.37540 * 15 14 5 41 41 H 0.96994 * 120.00374 * 335.00805 * 18 16 2 42 42 H 1.08998 * 109.47164 * 270.31048 * 24 23 22 43 43 H 1.09002 * 109.47370 * 30.31518 * 24 23 22 44 44 H 1.09004 * 109.46914 * 150.31293 * 24 23 22 45 45 H 1.09007 * 109.69933 * 103.44352 * 27 26 25 46 46 H 1.08999 * 109.70106 * 224.04766 * 27 26 25 47 47 H 1.09000 * 109.46500 * 169.50205 * 28 27 26 48 48 H 1.08998 * 109.45944 * 289.47257 * 28 27 26 49 49 H 1.09005 * 109.44213 * 50.00719 * 29 28 27 50 50 H 1.09005 * 109.43961 * 169.93261 * 29 28 27 51 51 H 1.09000 * 109.69063 * 43.59622 * 30 25 23 52 52 H 1.08995 * 109.72710 * 283.03670 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8287 1.1699 6 6 4.2937 -0.3777 2.1942 7 1 3.9446 0.4193 2.8341 8 6 5.5420 -0.9450 2.4102 9 7 6.4552 -0.2862 3.0917 10 14 5.9259 -2.6433 1.7338 11 1 6.5608 -2.5120 0.3977 12 1 6.8542 -3.3454 2.6561 13 1 4.6680 -3.4227 1.6096 14 6 4.1053 -1.4268 -0.0302 15 6 3.5709 -0.6954 -1.2657 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2240 -2.1390 18 7 1.5784 -2.1128 -1.2312 19 6 1.4502 -2.7947 -2.3867 20 8 1.7188 -2.2565 -3.4431 21 6 0.9834 -4.1960 -2.3693 22 7 0.6622 -4.9082 -1.3028 23 7 0.2929 -6.0916 -1.6541 24 6 -0.1344 -7.1464 -0.7317 25 6 0.3629 -6.2182 -2.9895 26 6 0.8002 -5.0334 -3.4825 27 6 1.0236 -4.7453 -4.9414 28 6 1.0760 -6.0821 -5.6936 29 6 -0.1274 -6.9405 -5.2953 30 6 0.0344 -7.4144 -3.8453 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.7638 -0.1572 2.1389 35 1 1.6033 -1.7202 1.3000 36 1 7.3274 -0.6827 3.2430 37 1 5.1896 -1.3246 0.0143 38 1 3.8376 -2.4818 -0.0859 39 1 3.9160 0.3385 -1.2541 40 1 3.9340 -1.1901 -2.1666 41 1 1.3643 -2.5423 -0.3883 42 1 0.7318 -7.7307 -0.4214 43 1 -0.6016 -6.6960 0.1441 44 1 -0.8517 -7.7975 -1.2316 45 1 0.2034 -4.1391 -5.3261 46 1 1.9663 -4.2136 -5.0708 47 1 1.0500 -5.8959 -6.7673 48 1 1.9968 -6.6065 -5.4383 49 1 -1.0395 -6.3503 -5.3845 50 1 -0.1896 -7.8063 -5.9546 51 1 -0.8951 -7.8680 -3.5013 52 1 0.8428 -8.1430 -3.7852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942938728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:30 Heat of formation + Delta-G solvation = 52.972874 kcal Electronic energy + Delta-G solvation = -32137.035333 eV Core-core repulsion = 28138.204292 eV Total energy + Delta-G solvation = -3998.831042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.93167 -39.75911 -37.69354 -37.16087 -34.34171 -33.91909 -32.49055 -31.50948 -30.56228 -30.38572 -29.88958 -27.51265 -26.26734 -25.17553 -24.04309 -23.04536 -22.14954 -21.74257 -21.46661 -20.03222 -19.21809 -18.68532 -17.47861 -16.70335 -16.65626 -16.40211 -15.49589 -15.04358 -14.94349 -14.79594 -14.25118 -14.11948 -14.02793 -13.87245 -13.70805 -13.53292 -13.46651 -13.36808 -13.08296 -12.98415 -12.77253 -12.45332 -12.21341 -12.18166 -11.69454 -11.54856 -11.45632 -11.20107 -11.20049 -11.07165 -10.89525 -10.72695 -10.59566 -10.46877 -10.17430 -9.90811 -9.77860 -9.61168 -9.44729 -9.19246 -8.73526 -8.64622 -8.48795 -6.93163 -5.92432 -3.27727 1.59746 2.01802 2.29903 3.36564 3.45203 3.50776 3.55016 3.61457 4.14915 4.23423 4.53222 4.55696 4.56374 4.76260 4.79941 4.90858 4.97753 5.00631 5.06787 5.09794 5.18099 5.26896 5.30080 5.33519 5.39842 5.42006 5.49546 5.62267 5.69675 5.76726 5.86011 5.89889 5.93774 5.95939 6.05063 6.10794 6.12244 6.17782 6.24107 6.35475 6.40388 6.45274 6.51029 6.65217 6.67344 6.71654 6.76287 6.86240 7.01561 7.68906 7.96982 7.99238 8.35298 8.48799 8.96886 9.75287 10.13250 11.23579 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.003340 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.003786 B = 8382.190914 C = 8970.841589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.087 0.913 4 C 0.154 3.846 5 N -0.605 5.605 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.909 5.909 10 Si 0.882 3.118 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.272 1.272 14 C 0.129 3.871 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.081 0.919 18 N -0.702 5.702 19 C 0.602 3.398 20 O -0.537 6.537 21 C -0.006 4.006 22 N -0.263 5.263 23 N -0.276 5.276 24 C 0.086 3.914 25 C 0.002 3.998 26 C -0.144 4.144 27 C -0.041 4.041 28 C -0.121 4.121 29 C -0.113 4.113 30 C -0.044 4.044 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.406 0.594 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.278 -15.170 -14.501 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.105 0.895 4 C 0.028 3.972 5 N -0.328 5.328 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.552 5.552 10 Si 0.712 3.288 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.197 1.197 14 C 0.003 3.997 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.099 0.901 18 N -0.353 5.353 19 C 0.386 3.614 20 O -0.413 6.413 21 C -0.165 4.165 22 N -0.099 5.099 23 N -0.063 5.063 24 C -0.054 4.054 25 C -0.124 4.124 26 C -0.154 4.154 27 C -0.079 4.079 28 C -0.159 4.159 29 C -0.151 4.151 30 C -0.083 4.083 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.243 0.757 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.022 -14.785 -13.858 26.465 hybrid contribution 0.378 -1.373 -0.463 1.498 sum -16.644 -16.158 -14.322 27.262 Atomic orbital electron populations 1.21760 0.95447 1.01484 1.01292 1.21937 0.94887 1.00938 0.96190 0.89468 1.20934 0.84508 0.96598 0.95168 1.44359 1.00616 1.71904 1.15965 1.18913 0.97805 1.13817 1.08066 0.89650 1.25249 0.96437 0.97978 0.97768 1.69836 1.04423 1.37019 1.43910 0.86969 0.77641 0.87170 0.76972 1.21720 1.23286 1.19661 1.21274 0.97894 0.94611 0.85875 1.22394 0.94740 1.02272 0.99232 1.20937 0.94460 0.80520 0.98524 0.90127 1.46023 1.66367 1.14111 1.08841 1.16847 0.77309 0.82952 0.84250 1.90744 1.51273 1.68592 1.30705 1.21665 1.08567 0.96091 0.90160 1.73870 1.17042 0.92619 1.26383 1.45008 1.46297 1.09622 1.05360 1.22149 1.01640 0.88047 0.93606 1.21067 1.07998 0.99023 0.84271 1.19864 1.06694 0.92253 0.96612 1.19963 1.03167 0.96649 0.88095 1.21669 0.98194 0.95985 1.00035 1.21555 0.99399 0.99982 0.94205 1.20182 1.01703 0.92728 0.93638 0.92560 0.93010 0.93095 0.91548 0.96333 0.92819 0.91115 0.95814 0.90680 0.92164 0.75735 0.89676 0.88370 0.88858 0.90749 0.89751 0.91209 0.91750 0.91357 0.91012 0.90602 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.05 37.16 0.34 -1.57 16 2 C -0.12 -1.94 2.67 -90.50 -0.24 -2.19 16 3 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.15 2.99 5.50 -3.71 -0.02 2.97 16 5 N -0.61 -14.44 2.77 -172.32 -0.48 -14.92 16 6 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 7 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 8 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 9 N -0.91 -28.22 13.97 55.49 0.78 -27.45 16 10 Si 0.88 23.19 24.35 -169.99 -4.14 19.05 16 11 H -0.29 -7.49 6.62 56.52 0.37 -7.11 16 12 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 13 H -0.27 -7.07 6.64 56.52 0.38 -6.70 16 14 C 0.13 2.95 3.94 -3.71 -0.01 2.94 16 15 C -0.15 -2.85 5.77 -26.61 -0.15 -3.00 16 16 C 0.16 2.74 2.21 -67.89 -0.15 2.59 16 17 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 18 N -0.70 -11.93 3.59 -54.75 -0.20 -12.13 16 19 C 0.60 10.59 7.79 -12.39 -0.10 10.49 16 20 O -0.54 -10.33 15.47 5.31 0.08 -10.24 16 21 C -0.01 -0.09 7.12 -82.99 -0.59 -0.68 16 22 N -0.26 -3.95 11.71 33.28 0.39 -3.56 16 23 N -0.28 -3.21 3.69 -63.97 -0.24 -3.44 16 24 C 0.09 0.57 11.17 59.84 0.67 1.24 16 25 C 0.00 0.02 6.71 -82.45 -0.55 -0.53 16 26 C -0.14 -1.97 5.99 -104.88 -0.63 -2.60 16 27 C -0.04 -0.48 5.54 -27.79 -0.15 -0.63 16 28 C -0.12 -1.01 5.91 -26.43 -0.16 -1.17 16 29 C -0.11 -0.76 5.89 -26.47 -0.16 -0.91 16 30 C -0.04 -0.31 5.90 -27.67 -0.16 -0.47 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 35 H 0.02 0.35 6.65 -51.93 -0.35 0.01 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.07 1.79 4.49 -51.93 -0.23 1.56 16 38 H 0.02 0.56 6.67 -51.93 -0.35 0.21 16 39 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.41 6.89 6.47 -40.82 -0.26 6.63 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.33 7.52 -51.93 -0.39 -0.06 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 49 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.08 0.38 7.73 -51.93 -0.40 -0.02 16 52 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -34.72 394.76 -8.85 -43.57 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.68 Total: 3.47 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.32 Total: -0.30 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.25 Total: -61.50 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.14 Total: 19.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.72 -8.85 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942938728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.545 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds