Wall clock time and date at job start Wed Apr 1 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49975 * 2 1 4 4 C 1.53195 * 109.49733 * 120.06101 * 2 1 3 5 5 N 1.46923 * 108.77416 * 174.58745 * 4 2 1 6 6 C 1.36941 * 120.63258 * 126.37168 * 5 4 2 7 7 H 1.08005 * 119.99741 * 332.62609 * 6 5 4 8 8 C 1.38808 * 120.00144 * 152.62695 * 6 5 4 9 9 N 1.31622 * 120.00074 * 159.37218 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 339.36867 * 8 6 5 11 11 H 1.48504 * 109.46685 * 92.92930 * 10 8 6 12 12 H 1.48501 * 109.47365 * 212.93054 * 10 8 6 13 13 H 1.48499 * 109.47156 * 332.93104 * 10 8 6 14 14 C 1.46929 * 118.73867 * 306.38724 * 5 4 2 15 15 C 1.53193 * 108.77142 * 53.61419 * 14 5 4 16 16 C 1.53039 * 109.49660 * 239.93038 * 2 1 3 17 17 H 1.09004 * 109.46000 * 58.66701 * 16 2 1 18 18 N 1.46493 * 109.46106 * 298.70181 * 16 2 1 19 19 C 1.34778 * 119.99649 * 154.99783 * 18 16 2 20 20 O 1.21566 * 120.00402 * 0.02562 * 19 18 16 21 21 C 1.47718 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.32202 * 126.67455 * 359.69340 * 21 19 18 23 23 N 1.28850 * 110.14961 * 179.81416 * 22 21 19 24 24 C 1.46495 * 124.98064 * 180.11349 * 23 22 21 25 25 C 1.34318 * 110.03791 * 0.38650 * 23 22 21 26 26 C 1.35578 * 107.21684 * 359.84251 * 25 23 22 27 27 C 1.50378 * 124.62023 * 179.80086 * 26 25 23 28 28 C 1.53476 * 108.28496 * 343.74835 * 27 26 25 29 29 C 1.53097 * 109.51167 * 49.48418 * 28 27 26 30 30 C 1.50710 * 128.90625 * 179.88181 * 25 23 22 31 31 H 1.09004 * 109.46910 * 300.00360 * 1 2 3 32 32 H 1.08990 * 109.46820 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46800 * 60.00372 * 1 2 3 34 34 H 1.08999 * 109.58418 * 294.37478 * 4 2 1 35 35 H 1.09000 * 109.58626 * 54.65582 * 4 2 1 36 36 H 0.96994 * 119.99948 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58388 * 173.39819 * 14 5 4 38 38 H 1.08990 * 109.58854 * 293.82625 * 14 5 4 39 39 H 1.09007 * 109.49974 * 65.31520 * 15 14 5 40 40 H 1.09000 * 109.49341 * 185.37540 * 15 14 5 41 41 H 0.96994 * 120.00374 * 335.00805 * 18 16 2 42 42 H 1.08998 * 109.47164 * 270.31048 * 24 23 22 43 43 H 1.09002 * 109.47370 * 30.31518 * 24 23 22 44 44 H 1.09004 * 109.46914 * 150.31293 * 24 23 22 45 45 H 1.09007 * 109.69933 * 103.44352 * 27 26 25 46 46 H 1.08999 * 109.70106 * 224.04766 * 27 26 25 47 47 H 1.09000 * 109.46500 * 169.50205 * 28 27 26 48 48 H 1.08998 * 109.45944 * 289.47257 * 28 27 26 49 49 H 1.09005 * 109.44213 * 50.00719 * 29 28 27 50 50 H 1.09005 * 109.43961 * 169.93261 * 29 28 27 51 51 H 1.09000 * 109.69063 * 43.59622 * 30 25 23 52 52 H 1.08995 * 109.72710 * 283.03670 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8287 1.1699 6 6 4.2937 -0.3777 2.1942 7 1 3.9446 0.4193 2.8341 8 6 5.5420 -0.9450 2.4102 9 7 6.4552 -0.2862 3.0917 10 14 5.9259 -2.6433 1.7338 11 1 6.5608 -2.5120 0.3977 12 1 6.8542 -3.3454 2.6561 13 1 4.6680 -3.4227 1.6096 14 6 4.1053 -1.4268 -0.0302 15 6 3.5709 -0.6954 -1.2657 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2240 -2.1390 18 7 1.5784 -2.1128 -1.2312 19 6 1.4502 -2.7947 -2.3867 20 8 1.7188 -2.2565 -3.4431 21 6 0.9834 -4.1960 -2.3693 22 7 0.6622 -4.9082 -1.3028 23 7 0.2929 -6.0916 -1.6541 24 6 -0.1344 -7.1464 -0.7317 25 6 0.3629 -6.2182 -2.9895 26 6 0.8002 -5.0334 -3.4825 27 6 1.0236 -4.7453 -4.9414 28 6 1.0760 -6.0821 -5.6936 29 6 -0.1274 -6.9405 -5.2953 30 6 0.0344 -7.4144 -3.8453 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.7638 -0.1572 2.1389 35 1 1.6033 -1.7202 1.3000 36 1 7.3274 -0.6827 3.2430 37 1 5.1896 -1.3246 0.0143 38 1 3.8376 -2.4818 -0.0859 39 1 3.9160 0.3385 -1.2541 40 1 3.9340 -1.1901 -2.1666 41 1 1.3643 -2.5423 -0.3883 42 1 0.7318 -7.7307 -0.4214 43 1 -0.6016 -6.6960 0.1441 44 1 -0.8517 -7.7975 -1.2316 45 1 0.2034 -4.1391 -5.3261 46 1 1.9663 -4.2136 -5.0708 47 1 1.0500 -5.8959 -6.7673 48 1 1.9968 -6.6065 -5.4383 49 1 -1.0395 -6.3503 -5.3845 50 1 -0.1896 -7.8063 -5.9546 51 1 -0.8951 -7.8680 -3.5013 52 1 0.8428 -8.1430 -3.7852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942938728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:29 Heat of formation + Delta-G solvation = 30.375472 kcal Electronic energy + Delta-G solvation = -32138.015230 eV Core-core repulsion = 28138.204292 eV Total energy + Delta-G solvation = -3999.810939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.85551 -41.19805 -39.21622 -37.86413 -36.11422 -34.80303 -33.98270 -33.41910 -32.03075 -31.25154 -30.75802 -28.44614 -27.79609 -26.88967 -24.90915 -24.18586 -23.39418 -23.12140 -22.86599 -21.18995 -20.35728 -19.91967 -18.86888 -18.31275 -17.57933 -17.47329 -17.19319 -16.62010 -16.30580 -15.88753 -15.69594 -15.36560 -15.23017 -15.07426 -14.85260 -14.63491 -14.55784 -14.37307 -14.24859 -14.11145 -13.79220 -13.69679 -13.49770 -13.34068 -13.21276 -12.95175 -12.88181 -12.84974 -12.31120 -12.13651 -11.97482 -11.84351 -11.73362 -11.71397 -11.66666 -11.58538 -11.47306 -11.31774 -11.03485 -10.75353 -10.23264 -9.95076 -9.57839 -8.95892 -8.20348 -5.50810 0.49846 1.08312 1.24057 1.33185 1.42228 1.54248 2.18403 2.35610 2.36440 3.00305 3.28323 3.31731 3.54232 3.67418 3.84909 3.90332 4.02542 4.04309 4.06852 4.18831 4.23521 4.29848 4.32727 4.37825 4.44428 4.51917 4.55088 4.59207 4.63303 4.65511 4.70626 4.76611 4.84614 4.88300 4.90581 4.97146 4.99605 5.04594 5.11212 5.15413 5.18227 5.23635 5.25656 5.32515 5.42033 5.45923 5.49217 5.55300 5.83611 5.90434 6.10325 6.43924 6.87089 6.87721 7.16347 7.58331 8.00236 8.99516 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.003340 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.003786 B = 8382.190914 C = 8970.841589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.151 3.849 5 N -0.616 5.616 6 C -0.242 4.242 7 H 0.062 0.938 8 C -0.029 4.029 9 N -0.953 5.953 10 Si 0.939 3.061 11 H -0.287 1.287 12 H -0.308 1.308 13 H -0.267 1.267 14 C 0.132 3.868 15 C -0.139 4.139 16 C 0.165 3.835 17 H 0.088 0.912 18 N -0.699 5.699 19 C 0.600 3.400 20 O -0.562 6.562 21 C -0.042 4.042 22 N -0.288 5.288 23 N -0.270 5.270 24 C 0.073 3.927 25 C 0.016 3.984 26 C -0.172 4.172 27 C -0.040 4.040 28 C -0.117 4.117 29 C -0.110 4.110 30 C -0.042 4.042 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.045 0.955 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.406 0.594 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.100 0.900 51 H 0.107 0.893 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.979 -18.155 -15.958 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.102 0.898 4 C 0.026 3.974 5 N -0.340 5.340 6 C -0.371 4.371 7 H 0.079 0.921 8 C -0.224 4.224 9 N -0.599 5.599 10 Si 0.769 3.231 11 H -0.214 1.214 12 H -0.236 1.236 13 H -0.192 1.192 14 C 0.007 3.993 15 C -0.179 4.179 16 C 0.061 3.939 17 H 0.106 0.894 18 N -0.350 5.350 19 C 0.386 3.614 20 O -0.440 6.440 21 C -0.199 4.199 22 N -0.125 5.125 23 N -0.057 5.057 24 C -0.066 4.066 25 C -0.110 4.110 26 C -0.183 4.183 27 C -0.078 4.078 28 C -0.155 4.155 29 C -0.148 4.148 30 C -0.081 4.081 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.149 0.851 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.119 0.881 51 H 0.125 0.875 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.770 -17.785 -15.324 30.692 hybrid contribution 1.137 -0.462 0.003 1.228 sum -18.633 -18.247 -15.321 30.247 Atomic orbital electron populations 1.21683 0.92628 1.02058 1.02686 1.21801 0.97065 0.99975 0.93888 0.89750 1.21132 0.81782 0.97638 0.96846 1.44465 1.02314 1.71853 1.15336 1.18909 0.97869 1.12407 1.07927 0.92051 1.25771 0.96738 1.00787 0.99083 1.69940 1.04984 1.38445 1.46578 0.86039 0.77352 0.83420 0.76291 1.21419 1.23640 1.19224 1.21169 0.96438 0.94780 0.86920 1.22290 0.96640 1.01625 0.97318 1.20858 0.92634 0.81107 0.99282 0.89365 1.45968 1.66311 1.13887 1.08835 1.17150 0.76696 0.83755 0.83828 1.90714 1.52439 1.69435 1.31431 1.21575 1.10800 0.95759 0.91719 1.73785 1.18115 0.94164 1.26427 1.45527 1.44500 1.09266 1.06450 1.22625 1.03074 0.87300 0.93572 1.21709 1.05606 0.99433 0.84291 1.20204 1.07963 0.93174 0.96914 1.19938 1.01323 0.98455 0.88083 1.21658 0.99220 0.94259 1.00315 1.21575 0.98031 1.00580 0.94626 1.20435 1.03750 0.91145 0.92751 0.91125 0.92837 0.91779 0.91556 0.95148 0.92965 0.93724 0.96138 0.90694 0.92279 0.75692 0.88510 0.88116 0.85081 0.91389 0.92628 0.89889 0.91988 0.91660 0.88109 0.87524 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.05 71.98 0.65 -2.61 16 2 C -0.11 -3.36 2.67 -10.71 -0.03 -3.39 16 3 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.15 5.73 5.50 86.36 0.48 6.20 16 5 N -0.62 -29.46 2.77 -699.10 -1.94 -31.39 16 6 C -0.24 -13.82 10.03 84.03 0.84 -12.98 16 7 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 8 C -0.03 -1.72 5.23 84.86 0.44 -1.28 16 9 N -0.95 -60.85 13.97 21.65 0.30 -60.55 16 10 Si 0.94 49.08 24.35 68.60 1.67 50.75 16 11 H -0.29 -14.70 6.62 99.48 0.66 -14.04 16 12 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 13 H -0.27 -13.61 6.64 99.48 0.66 -12.95 16 14 C 0.13 6.08 3.94 86.36 0.34 6.42 16 15 C -0.14 -5.42 5.77 30.67 0.18 -5.24 16 16 C 0.17 5.58 2.21 45.02 0.10 5.68 16 17 H 0.09 2.91 7.58 -2.38 -0.02 2.89 16 18 N -0.70 -23.53 3.59 -445.41 -1.60 -25.13 16 19 C 0.60 21.34 7.79 86.75 0.68 22.01 16 20 O -0.56 -22.14 15.47 -3.92 -0.06 -22.20 16 21 C -0.04 -1.34 7.12 42.14 0.30 -1.04 16 22 N -0.29 -8.38 11.71 -48.62 -0.57 -8.95 16 23 N -0.27 -5.66 3.69 -356.29 -1.31 -6.97 16 24 C 0.07 0.71 11.17 127.77 1.43 2.14 16 25 C 0.02 0.32 6.71 41.57 0.28 0.60 16 26 C -0.17 -4.62 5.99 -20.03 -0.12 -4.74 16 27 C -0.04 -0.94 5.54 29.91 0.17 -0.78 16 28 C -0.12 -1.74 5.91 30.79 0.18 -1.55 16 29 C -0.11 -1.06 5.89 30.76 0.18 -0.88 16 30 C -0.04 -0.41 5.90 29.98 0.18 -0.23 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 35 H 0.03 1.11 6.65 -2.39 -0.02 1.10 16 36 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.04 2.29 4.49 -2.39 -0.01 2.28 16 38 H 0.02 0.97 6.67 -2.39 -0.02 0.95 16 39 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.41 13.58 6.47 -92.71 -0.60 12.98 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.13 0.28 7.52 -2.39 -0.02 0.26 16 45 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 47 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 49 H 0.06 0.70 8.12 -2.38 -0.02 0.68 16 50 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.11 0.44 7.73 -2.39 -0.02 0.42 16 52 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -78.52 394.76 2.99 -75.54 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.23 Total: 20.57 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.27 Total: 8.35 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -5.12 Total: -133.00 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.67 Total: 50.75 kcal Total: -78.52 2.99 -75.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942938728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.911 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds