Wall clock time and date at job start Wed Apr 1 2020 04:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49324 * 2 1 4 4 C 1.53194 * 109.52665 * 120.08242 * 2 1 3 5 5 N 1.46918 * 108.77699 * 174.60505 * 4 2 1 6 6 C 1.36940 * 120.63171 * 126.38711 * 5 4 2 7 7 H 1.07999 * 120.00077 * 332.79537 * 6 5 4 8 8 C 1.38815 * 119.99919 * 152.79346 * 6 5 4 9 9 N 1.31618 * 120.00124 * 159.75825 * 8 6 5 10 10 Si 1.86802 * 119.99888 * 339.75760 * 8 6 5 11 11 H 1.48503 * 109.46865 * 94.89630 * 10 8 6 12 12 H 1.48495 * 109.47209 * 214.89361 * 10 8 6 13 13 H 1.48499 * 109.47227 * 334.89526 * 10 8 6 14 14 C 1.46928 * 118.73901 * 306.39001 * 5 4 2 15 15 C 1.53194 * 108.77363 * 53.60859 * 14 5 4 16 16 C 1.53037 * 109.49690 * 239.93834 * 2 1 3 17 17 H 1.09004 * 109.45690 * 298.66470 * 16 2 1 18 18 N 1.46499 * 109.46101 * 58.64028 * 16 2 1 19 19 C 1.34778 * 119.99923 * 204.99576 * 18 16 2 20 20 O 1.21567 * 119.99833 * 0.02562 * 19 18 16 21 21 C 1.47711 * 119.99686 * 179.97438 * 19 18 16 22 22 N 1.32197 * 126.68047 * 359.69308 * 21 19 18 23 23 N 1.28846 * 110.15046 * 179.86121 * 22 21 19 24 24 C 1.46498 * 124.97819 * 180.11496 * 23 22 21 25 25 C 1.34314 * 110.04386 * 0.33836 * 23 22 21 26 26 C 1.35584 * 107.21069 * 359.86769 * 25 23 22 27 27 C 1.50380 * 124.61818 * 179.79663 * 26 25 23 28 28 C 1.53488 * 108.28166 * 343.79909 * 27 26 25 29 29 C 1.53104 * 109.50335 * 49.48098 * 28 27 26 30 30 C 1.50709 * 128.90446 * 179.97438 * 25 23 22 31 31 H 1.09006 * 109.46927 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46850 * 299.99485 * 1 2 3 33 33 H 1.08999 * 109.47403 * 59.99879 * 1 2 3 34 34 H 1.09004 * 109.58314 * 294.38985 * 4 2 1 35 35 H 1.08993 * 109.58474 * 54.81217 * 4 2 1 36 36 H 0.96996 * 120.00104 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58711 * 293.82178 * 14 5 4 38 38 H 1.08996 * 109.58847 * 173.39455 * 14 5 4 39 39 H 1.08996 * 109.49886 * 185.41549 * 15 14 5 40 40 H 1.09005 * 109.49999 * 65.31446 * 15 14 5 41 41 H 0.96997 * 119.99958 * 25.00004 * 18 16 2 42 42 H 1.09002 * 109.47468 * 270.25017 * 24 23 22 43 43 H 1.09006 * 109.47430 * 30.25164 * 24 23 22 44 44 H 1.08998 * 109.47242 * 150.25627 * 24 23 22 45 45 H 1.08990 * 109.70167 * 103.50896 * 27 26 25 46 46 H 1.09001 * 109.70228 * 224.11599 * 27 26 25 47 47 H 1.08999 * 109.46619 * 289.46479 * 28 27 26 48 48 H 1.09001 * 109.45418 * 169.48755 * 28 27 26 49 49 H 1.09005 * 109.43965 * 169.88251 * 29 28 27 50 50 H 1.08992 * 109.44351 * 49.98832 * 29 28 27 51 51 H 1.08995 * 109.69185 * 282.97165 * 30 25 23 52 52 H 1.09002 * 109.69006 * 43.55548 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0421 -0.7237 1.2494 5 7 3.5053 -0.8283 1.1690 6 6 4.2944 -0.3777 2.1935 7 1 3.9441 0.4168 2.8357 8 6 5.5445 -0.9422 2.4066 9 7 6.4543 -0.2859 3.0951 10 14 5.9357 -2.6333 1.7162 11 1 6.6151 -2.4872 0.4039 12 1 6.8272 -3.3580 2.6571 13 1 4.6758 -3.3991 1.5389 14 6 4.1060 -1.4254 -0.0316 15 6 3.5708 -0.6938 -1.2666 16 6 2.0408 -0.7227 -1.2486 17 1 1.6972 -1.7571 -1.2355 18 7 1.5261 -0.0525 -2.4453 19 6 1.3981 -0.7376 -3.5989 20 8 1.7094 -1.9118 -3.6462 21 6 0.8786 -0.0619 -4.8053 22 7 0.4965 1.2000 -4.9009 23 7 0.1009 1.4543 -6.1005 24 6 -0.3890 2.7544 -6.5653 25 6 0.1989 0.3516 -6.8610 26 6 0.6887 -0.6370 -6.0730 27 6 0.9493 -2.0452 -6.5318 28 6 0.2069 -2.2650 -7.8571 29 6 0.5224 -1.1145 -8.8166 30 6 -0.1471 0.1721 -8.3168 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.7645 -0.1580 2.1388 35 1 1.6065 -1.7216 1.2978 36 1 7.3279 -0.6802 3.2437 37 1 3.8388 -2.4807 -0.0877 38 1 5.1902 -1.3228 0.0126 39 1 3.9334 -1.1882 -2.1678 40 1 3.9153 0.3403 -1.2547 41 1 1.2774 0.8843 -2.4074 42 1 -1.4675 2.8103 -6.4176 43 1 0.0969 3.5493 -5.9995 44 1 -0.1610 2.8709 -7.6248 45 1 2.0190 -2.1910 -6.6811 46 1 0.5827 -2.7489 -5.7844 47 1 -0.8666 -2.2987 -7.6708 48 1 0.5282 -3.2071 -8.3013 49 1 0.1456 -1.3571 -9.8103 50 1 1.6013 -0.9674 -8.8643 51 1 -1.2282 0.0916 -8.4302 52 1 0.2204 1.0237 -8.8894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942938729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:35 Heat of formation + Delta-G solvation = 50.868234 kcal Electronic energy + Delta-G solvation = -31403.571879 eV Core-core repulsion = 27404.649573 eV Total energy + Delta-G solvation = -3998.922306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.02391 -39.63530 -37.73626 -37.22652 -34.61684 -34.00815 -32.59098 -31.54545 -30.62668 -30.32110 -29.91431 -27.61945 -26.31012 -25.04499 -24.04871 -22.93591 -22.22102 -21.74328 -21.27855 -20.08803 -19.46244 -19.04638 -17.46673 -16.77235 -16.68710 -16.36723 -15.94981 -15.03327 -14.91348 -14.68544 -14.36469 -14.12673 -14.07942 -13.95984 -13.76982 -13.46713 -13.40060 -13.22544 -13.14841 -12.99284 -12.85706 -12.64443 -12.26318 -12.03661 -11.88200 -11.58755 -11.48305 -11.26024 -11.13192 -10.97198 -10.93277 -10.81504 -10.54412 -10.46960 -10.10514 -9.96777 -9.92279 -9.63502 -9.43057 -9.28021 -8.78073 -8.67204 -8.52939 -6.93641 -5.90114 -3.26006 1.49487 1.93827 2.19661 3.35263 3.39840 3.52440 3.54919 3.58961 4.06002 4.15621 4.46684 4.49965 4.58897 4.65532 4.70461 4.84360 4.90691 4.97401 5.00455 5.06792 5.11623 5.20573 5.26774 5.33642 5.34055 5.42079 5.50700 5.57522 5.65074 5.78180 5.80838 5.85329 5.93879 5.96619 6.06990 6.10228 6.11285 6.17198 6.21487 6.32540 6.38481 6.44206 6.50462 6.57856 6.65771 6.70430 6.77495 6.85284 7.00729 7.59272 7.87281 8.00523 8.37056 8.41273 8.98370 9.76968 10.14626 11.25743 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002595 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.012889 B =10787.346992 C =11511.539884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.076 0.924 4 C 0.159 3.841 5 N -0.607 5.607 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.708 5.708 19 C 0.601 3.399 20 O -0.532 6.532 21 C -0.004 4.004 22 N -0.267 5.267 23 N -0.277 5.277 24 C 0.087 3.913 25 C 0.003 3.997 26 C -0.143 4.143 27 C -0.042 4.042 28 C -0.121 4.121 29 C -0.115 4.115 30 C -0.044 4.044 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.402 0.598 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 4.029 -25.964 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.330 5.330 6 C -0.387 4.387 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.553 5.553 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.358 5.358 19 C 0.385 3.615 20 O -0.406 6.406 21 C -0.164 4.164 22 N -0.103 5.103 23 N -0.064 5.064 24 C -0.054 4.054 25 C -0.122 4.122 26 C -0.153 4.153 27 C -0.080 4.080 28 C -0.158 4.158 29 C -0.153 4.153 30 C -0.083 4.083 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.237 0.763 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.391 4.301 -25.272 30.978 hybrid contribution 0.323 -0.837 -0.790 1.195 sum -17.067 3.464 -26.062 31.345 Atomic orbital electron populations 1.21766 0.95461 1.01634 1.01139 1.21962 0.94861 1.00916 0.95921 0.90579 1.20917 0.84324 0.97032 0.94544 1.44401 1.00778 1.71863 1.15964 1.18917 0.97730 1.14070 1.07995 0.89657 1.25263 0.96434 0.98106 0.97785 1.69832 1.04494 1.37204 1.43761 0.86960 0.77892 0.86887 0.77059 1.21646 1.23223 1.19298 1.21317 0.98013 0.94815 0.85527 1.22414 0.94506 1.01984 0.99319 1.21038 0.93945 0.97119 0.82499 0.89747 1.46091 1.65164 1.14678 1.09898 1.16868 0.77652 0.85654 0.81332 1.90779 1.50414 1.15262 1.84189 1.21681 1.07831 0.90933 0.95910 1.73813 1.16650 1.17548 1.02256 1.44993 1.45309 1.10013 1.06056 1.22142 1.00948 0.81037 1.01268 1.21073 1.07632 0.87207 0.96329 1.19893 1.06196 0.97405 0.91856 1.19984 1.00729 0.91033 0.96301 1.21669 1.00709 0.98144 0.95301 1.21565 1.01169 0.93697 0.98824 1.20191 1.01166 0.99298 0.87600 0.92878 0.92546 0.93226 0.91419 0.95650 0.92820 0.95332 0.90861 0.92231 0.91620 0.76347 0.89739 0.88410 0.88842 0.90614 0.89734 0.91790 0.91158 0.90962 0.91291 0.90108 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.03 37.16 0.34 -1.58 16 2 C -0.12 -1.91 2.46 -90.50 -0.22 -2.13 16 3 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 4 C 0.16 3.14 5.80 -3.71 -0.02 3.12 16 5 N -0.61 -14.70 2.77 -172.32 -0.48 -15.18 16 6 C -0.26 -7.33 10.04 -15.06 -0.15 -7.48 16 7 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 8 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 9 N -0.91 -28.33 13.97 55.49 0.78 -27.56 16 10 Si 0.88 23.11 24.35 -169.99 -4.14 18.97 16 11 H -0.29 -7.39 6.70 56.52 0.38 -7.01 16 12 H -0.30 -8.07 7.11 56.52 0.40 -7.66 16 13 H -0.27 -6.91 6.45 56.52 0.36 -6.55 16 14 C 0.13 2.98 4.19 -3.71 -0.02 2.97 16 15 C -0.14 -2.79 5.65 -26.61 -0.15 -2.94 16 16 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 17 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 18 N -0.71 -10.92 4.36 -54.75 -0.24 -11.16 16 19 C 0.60 9.93 7.79 -12.39 -0.10 9.84 16 20 O -0.53 -10.15 15.47 5.31 0.08 -10.06 16 21 C 0.00 -0.07 7.12 -82.99 -0.59 -0.66 16 22 N -0.27 -3.46 11.71 33.28 0.39 -3.07 16 23 N -0.28 -2.75 3.69 -63.96 -0.24 -2.99 16 24 C 0.09 0.42 11.17 59.85 0.67 1.09 16 25 C 0.00 0.03 6.71 -82.45 -0.55 -0.52 16 26 C -0.14 -1.81 5.99 -104.88 -0.63 -2.44 16 27 C -0.04 -0.48 5.54 -27.79 -0.15 -0.63 16 28 C -0.12 -0.93 5.91 -26.42 -0.16 -1.08 16 29 C -0.11 -0.70 5.89 -26.47 -0.16 -0.86 16 30 C -0.04 -0.26 5.90 -27.67 -0.16 -0.43 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 34 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 37 H 0.03 0.67 6.98 -51.93 -0.36 0.30 16 38 H 0.07 1.84 4.49 -51.93 -0.23 1.61 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.40 5.57 8.04 -40.82 -0.33 5.24 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.22 7.52 -51.93 -0.39 -0.17 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 47 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.47 8.11 -51.93 -0.42 0.04 16 51 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.32 7.73 -51.93 -0.40 -0.08 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -34.95 398.50 -8.95 -43.89 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.84 Total: 1.71 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.27 Total: -0.56 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.21 Total: -59.96 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.14 Total: 18.97 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.95 -8.95 -43.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942938729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.762 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds