Wall clock time and date at job start Wed Apr 1 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49324 * 2 1 4 4 C 1.53194 * 109.52665 * 120.08242 * 2 1 3 5 5 N 1.46918 * 108.77699 * 174.60505 * 4 2 1 6 6 C 1.36940 * 120.63171 * 126.38711 * 5 4 2 7 7 H 1.07999 * 120.00077 * 332.79537 * 6 5 4 8 8 C 1.38815 * 119.99919 * 152.79346 * 6 5 4 9 9 N 1.31618 * 120.00124 * 159.75825 * 8 6 5 10 10 Si 1.86802 * 119.99888 * 339.75760 * 8 6 5 11 11 H 1.48503 * 109.46865 * 94.89630 * 10 8 6 12 12 H 1.48495 * 109.47209 * 214.89361 * 10 8 6 13 13 H 1.48499 * 109.47227 * 334.89526 * 10 8 6 14 14 C 1.46928 * 118.73901 * 306.39001 * 5 4 2 15 15 C 1.53194 * 108.77363 * 53.60859 * 14 5 4 16 16 C 1.53037 * 109.49690 * 239.93834 * 2 1 3 17 17 H 1.09004 * 109.45690 * 298.66470 * 16 2 1 18 18 N 1.46499 * 109.46101 * 58.64028 * 16 2 1 19 19 C 1.34778 * 119.99923 * 204.99576 * 18 16 2 20 20 O 1.21567 * 119.99833 * 0.02562 * 19 18 16 21 21 C 1.47711 * 119.99686 * 179.97438 * 19 18 16 22 22 N 1.32197 * 126.68047 * 359.69308 * 21 19 18 23 23 N 1.28846 * 110.15046 * 179.86121 * 22 21 19 24 24 C 1.46498 * 124.97819 * 180.11496 * 23 22 21 25 25 C 1.34314 * 110.04386 * 0.33836 * 23 22 21 26 26 C 1.35584 * 107.21069 * 359.86769 * 25 23 22 27 27 C 1.50380 * 124.61818 * 179.79663 * 26 25 23 28 28 C 1.53488 * 108.28166 * 343.79909 * 27 26 25 29 29 C 1.53104 * 109.50335 * 49.48098 * 28 27 26 30 30 C 1.50709 * 128.90446 * 179.97438 * 25 23 22 31 31 H 1.09006 * 109.46927 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46850 * 299.99485 * 1 2 3 33 33 H 1.08999 * 109.47403 * 59.99879 * 1 2 3 34 34 H 1.09004 * 109.58314 * 294.38985 * 4 2 1 35 35 H 1.08993 * 109.58474 * 54.81217 * 4 2 1 36 36 H 0.96996 * 120.00104 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58711 * 293.82178 * 14 5 4 38 38 H 1.08996 * 109.58847 * 173.39455 * 14 5 4 39 39 H 1.08996 * 109.49886 * 185.41549 * 15 14 5 40 40 H 1.09005 * 109.49999 * 65.31446 * 15 14 5 41 41 H 0.96997 * 119.99958 * 25.00004 * 18 16 2 42 42 H 1.09002 * 109.47468 * 270.25017 * 24 23 22 43 43 H 1.09006 * 109.47430 * 30.25164 * 24 23 22 44 44 H 1.08998 * 109.47242 * 150.25627 * 24 23 22 45 45 H 1.08990 * 109.70167 * 103.50896 * 27 26 25 46 46 H 1.09001 * 109.70228 * 224.11599 * 27 26 25 47 47 H 1.08999 * 109.46619 * 289.46479 * 28 27 26 48 48 H 1.09001 * 109.45418 * 169.48755 * 28 27 26 49 49 H 1.09005 * 109.43965 * 169.88251 * 29 28 27 50 50 H 1.08992 * 109.44351 * 49.98832 * 29 28 27 51 51 H 1.08995 * 109.69185 * 282.97165 * 30 25 23 52 52 H 1.09002 * 109.69006 * 43.55548 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0421 -0.7237 1.2494 5 7 3.5053 -0.8283 1.1690 6 6 4.2944 -0.3777 2.1935 7 1 3.9441 0.4168 2.8357 8 6 5.5445 -0.9422 2.4066 9 7 6.4543 -0.2859 3.0951 10 14 5.9357 -2.6333 1.7162 11 1 6.6151 -2.4872 0.4039 12 1 6.8272 -3.3580 2.6571 13 1 4.6758 -3.3991 1.5389 14 6 4.1060 -1.4254 -0.0316 15 6 3.5708 -0.6938 -1.2666 16 6 2.0408 -0.7227 -1.2486 17 1 1.6972 -1.7571 -1.2355 18 7 1.5261 -0.0525 -2.4453 19 6 1.3981 -0.7376 -3.5989 20 8 1.7094 -1.9118 -3.6462 21 6 0.8786 -0.0619 -4.8053 22 7 0.4965 1.2000 -4.9009 23 7 0.1009 1.4543 -6.1005 24 6 -0.3890 2.7544 -6.5653 25 6 0.1989 0.3516 -6.8610 26 6 0.6887 -0.6370 -6.0730 27 6 0.9493 -2.0452 -6.5318 28 6 0.2069 -2.2650 -7.8571 29 6 0.5224 -1.1145 -8.8166 30 6 -0.1471 0.1721 -8.3168 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.7645 -0.1580 2.1388 35 1 1.6065 -1.7216 1.2978 36 1 7.3279 -0.6802 3.2437 37 1 3.8388 -2.4807 -0.0877 38 1 5.1902 -1.3228 0.0126 39 1 3.9334 -1.1882 -2.1678 40 1 3.9153 0.3403 -1.2547 41 1 1.2774 0.8843 -2.4074 42 1 -1.4675 2.8103 -6.4176 43 1 0.0969 3.5493 -5.9995 44 1 -0.1610 2.8709 -7.6248 45 1 2.0190 -2.1910 -6.6811 46 1 0.5827 -2.7489 -5.7844 47 1 -0.8666 -2.2987 -7.6708 48 1 0.5282 -3.2071 -8.3013 49 1 0.1456 -1.3571 -9.8103 50 1 1.6013 -0.9674 -8.8643 51 1 -1.2282 0.0916 -8.4302 52 1 0.2204 1.0237 -8.8894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942938729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:34 Heat of formation + Delta-G solvation = 27.577015 kcal Electronic energy + Delta-G solvation = -31404.581862 eV Core-core repulsion = 27404.649573 eV Total energy + Delta-G solvation = -3999.932289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.84846 -41.02612 -39.28499 -37.86559 -36.29890 -34.80430 -34.17279 -33.39883 -31.94467 -31.24627 -30.75455 -28.48522 -27.84538 -26.64035 -24.86227 -24.20061 -23.18751 -23.01228 -22.82114 -21.42175 -20.68598 -19.90100 -18.85864 -18.29458 -17.61783 -17.42404 -17.31639 -16.71597 -16.12629 -15.97073 -15.66910 -15.32188 -15.17569 -15.00079 -14.73690 -14.65844 -14.55718 -14.38384 -14.35508 -14.02988 -13.81402 -13.66351 -13.58194 -13.32888 -13.31837 -12.88270 -12.86712 -12.70767 -12.24754 -12.13572 -11.97595 -11.85060 -11.75604 -11.72282 -11.66771 -11.59475 -11.50085 -11.36774 -11.05909 -10.75603 -10.23111 -9.94124 -9.57344 -8.98609 -8.18454 -5.50174 0.49520 1.08419 1.28419 1.38538 1.47573 1.54323 2.13446 2.34007 2.39458 3.01571 3.27080 3.32957 3.54935 3.63959 3.83433 3.88946 4.02703 4.06174 4.08119 4.19132 4.23937 4.30412 4.36414 4.37689 4.45832 4.55046 4.57729 4.59426 4.64950 4.66988 4.70474 4.77699 4.78163 4.87355 4.87469 4.97618 5.02456 5.04122 5.08451 5.14183 5.15848 5.23792 5.26689 5.32184 5.43215 5.45882 5.48626 5.50849 5.84261 5.90497 6.11275 6.44809 6.87628 6.88850 7.16754 7.58962 8.00636 9.01099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002595 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.012889 B =10787.346992 C =11511.539884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.074 0.926 4 C 0.153 3.847 5 N -0.619 5.619 6 C -0.244 4.244 7 H 0.061 0.939 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.308 1.308 13 H -0.261 1.261 14 C 0.128 3.872 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.072 0.928 18 N -0.698 5.698 19 C 0.599 3.401 20 O -0.566 6.566 21 C -0.039 4.039 22 N -0.280 5.280 23 N -0.268 5.268 24 C 0.073 3.927 25 C 0.018 3.982 26 C -0.174 4.174 27 C -0.042 4.042 28 C -0.116 4.116 29 C -0.113 4.113 30 C -0.042 4.042 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.411 0.589 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.059 0.941 51 H 0.103 0.897 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.386 4.991 -29.526 36.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.092 0.908 4 C 0.028 3.972 5 N -0.343 5.343 6 C -0.374 4.374 7 H 0.079 0.921 8 C -0.226 4.226 9 N -0.601 5.601 10 Si 0.768 3.232 11 H -0.210 1.210 12 H -0.237 1.237 13 H -0.186 1.186 14 C 0.002 3.998 15 C -0.172 4.172 16 C 0.063 3.937 17 H 0.091 0.909 18 N -0.348 5.348 19 C 0.385 3.615 20 O -0.443 6.443 21 C -0.196 4.196 22 N -0.117 5.117 23 N -0.056 5.056 24 C -0.065 4.065 25 C -0.109 4.109 26 C -0.185 4.185 27 C -0.081 4.081 28 C -0.153 4.153 29 C -0.151 4.151 30 C -0.080 4.080 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.248 0.752 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.119 0.881 50 H 0.078 0.922 51 H 0.121 0.879 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.194 5.287 -28.862 35.620 hybrid contribution 1.087 -1.016 0.254 1.509 sum -19.107 4.271 -28.608 34.666 Atomic orbital electron populations 1.21694 0.92584 1.02222 1.02586 1.21778 0.97065 0.99872 0.93619 0.90808 1.21135 0.81698 0.98008 0.96391 1.44519 1.02438 1.71914 1.15416 1.18900 0.97838 1.12729 1.07922 0.92135 1.25820 0.96697 1.01031 0.99095 1.69940 1.05054 1.38671 1.46390 0.86034 0.77762 0.82946 0.76497 1.20965 1.23665 1.18595 1.21271 0.96831 0.95224 0.86470 1.22254 0.96368 1.01056 0.97506 1.20770 0.92204 0.96942 0.83795 0.90946 1.45874 1.64868 1.14957 1.09133 1.17210 0.76949 0.85341 0.81999 1.90748 1.51956 1.16795 1.84837 1.21456 1.10212 0.92099 0.95834 1.73734 1.17245 1.16682 1.04062 1.45534 1.43413 1.11552 1.05081 1.22643 1.02076 0.78669 1.03161 1.21652 1.05280 0.86171 0.97786 1.20187 1.07734 0.98647 0.91896 1.19941 1.00186 0.90227 0.97703 1.21651 1.00303 0.99646 0.93711 1.21588 1.00881 0.93000 0.99592 1.20427 1.02566 1.00210 0.84807 0.92735 0.90990 0.91898 0.91228 0.94724 0.92946 0.95228 0.93108 0.92348 0.92018 0.75227 0.87800 0.88087 0.85565 0.92161 0.92433 0.91397 0.90240 0.88096 0.92179 0.87925 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.03 71.98 0.65 -2.66 16 2 C -0.10 -3.28 2.46 -10.72 -0.03 -3.31 16 3 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.15 5.96 5.80 86.36 0.50 6.46 16 5 N -0.62 -30.15 2.77 -699.11 -1.94 -32.09 16 6 C -0.24 -14.12 10.04 84.03 0.84 -13.27 16 7 H 0.06 3.74 8.05 -2.91 -0.02 3.72 16 8 C -0.03 -1.90 5.24 84.86 0.44 -1.45 16 9 N -0.95 -61.17 13.97 21.65 0.30 -60.87 16 10 Si 0.94 48.85 24.35 68.60 1.67 50.52 16 11 H -0.28 -14.27 6.70 99.48 0.67 -13.60 16 12 H -0.31 -16.10 7.11 99.48 0.71 -15.40 16 13 H -0.26 -13.16 6.45 99.48 0.64 -12.52 16 14 C 0.13 5.93 4.19 86.36 0.36 6.29 16 15 C -0.13 -5.22 5.65 30.67 0.17 -5.04 16 16 C 0.17 5.76 1.88 45.02 0.08 5.84 16 17 H 0.07 2.72 7.58 -2.38 -0.02 2.70 16 18 N -0.70 -21.34 4.36 -445.40 -1.94 -23.28 16 19 C 0.60 20.17 7.79 86.75 0.68 20.84 16 20 O -0.57 -22.44 15.47 -3.93 -0.06 -22.50 16 21 C -0.04 -1.14 7.12 42.14 0.30 -0.84 16 22 N -0.28 -6.89 11.71 -48.63 -0.57 -7.46 16 23 N -0.27 -4.61 3.69 -356.28 -1.31 -5.92 16 24 C 0.07 0.41 11.17 127.77 1.43 1.84 16 25 C 0.02 0.31 6.71 41.57 0.28 0.58 16 26 C -0.17 -4.34 5.99 -20.03 -0.12 -4.46 16 27 C -0.04 -0.97 5.54 29.91 0.17 -0.81 16 28 C -0.12 -1.59 5.91 30.79 0.18 -1.41 16 29 C -0.11 -1.00 5.89 30.77 0.18 -0.81 16 30 C -0.04 -0.32 5.90 29.99 0.18 -0.14 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.42 7.36 -2.39 -0.02 1.40 16 34 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.03 1.38 6.98 -2.39 -0.02 1.36 16 38 H 0.05 2.58 4.49 -2.39 -0.01 2.57 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.41 11.05 8.04 -92.71 -0.75 10.31 16 42 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.13 -0.08 7.52 -2.39 -0.02 -0.10 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.58 7.68 -2.39 -0.02 1.56 16 47 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 50 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 51 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 52 H 0.10 0.27 7.73 -2.39 -0.02 0.25 16 Total: -1.00 -79.53 398.50 2.51 -77.02 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.07 Total: 16.91 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.30 Total: 7.67 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -5.46 Total: -129.62 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.67 Total: 50.52 kcal Total: -79.53 2.51 -77.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942938729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.598 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds