Wall clock time and date at job start Wed Apr 1 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49672 * 2 1 4 4 C 1.53186 * 109.50029 * 239.90010 * 2 1 3 5 5 N 1.46932 * 108.77422 * 185.41465 * 4 2 1 6 6 C 1.36936 * 120.63149 * 233.58500 * 5 4 2 7 7 H 1.08001 * 120.00232 * 151.84498 * 6 5 4 8 8 C 1.38821 * 119.99773 * 331.85256 * 6 5 4 9 9 N 1.31613 * 119.99636 * 343.06692 * 8 6 5 10 10 Si 1.86802 * 119.99760 * 163.07353 * 8 6 5 11 11 H 1.48505 * 109.47149 * 89.99541 * 10 8 6 12 12 H 1.48498 * 109.46777 * 209.99638 * 10 8 6 13 13 H 1.48499 * 109.47281 * 329.99539 * 10 8 6 14 14 C 1.46928 * 118.73957 * 53.60720 * 5 4 2 15 15 C 1.53185 * 108.77404 * 306.39399 * 14 5 4 16 16 C 1.53040 * 109.31647 * 54.63500 * 15 14 5 17 17 H 1.08997 * 109.45212 * 58.64782 * 16 15 14 18 18 N 1.46500 * 109.46025 * 178.61686 * 16 15 14 19 19 C 1.34781 * 119.99727 * 275.06588 * 18 16 15 20 20 O 1.21555 * 120.00015 * 359.97438 * 19 18 16 21 21 C 1.47832 * 120.00024 * 180.27963 * 19 18 16 22 22 C 1.39954 * 120.93630 * 359.44043 * 21 19 18 23 23 N 1.32147 * 118.91822 * 179.76748 * 22 21 19 24 24 C 1.31864 * 120.97153 * 0.52570 * 23 22 21 25 25 C 1.50704 * 118.95573 * 179.74731 * 24 23 22 26 26 C 1.52995 * 109.47442 * 239.97534 * 25 24 23 27 27 C 1.53002 * 109.46771 * 359.97438 * 25 24 23 28 28 C 1.53000 * 109.47012 * 119.97640 * 25 24 23 29 29 N 1.31875 * 122.09675 * 359.72433 * 24 23 22 30 30 C 1.32149 * 120.96431 * 359.97438 * 29 24 23 31 31 H 1.08995 * 109.47891 * 299.94091 * 1 2 3 32 32 H 1.09005 * 109.46915 * 59.93975 * 1 2 3 33 33 H 1.09005 * 109.46822 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.58647 * 305.19607 * 4 2 1 35 35 H 1.08994 * 109.58841 * 65.48735 * 4 2 1 36 36 H 0.97009 * 119.99536 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.58664 * 66.18002 * 14 5 4 38 38 H 1.08998 * 109.58616 * 186.46312 * 14 5 4 39 39 H 1.08999 * 109.49999 * 294.68095 * 15 14 5 40 40 H 1.09006 * 109.50264 * 174.58846 * 15 14 5 41 41 H 0.96993 * 120.00686 * 95.07177 * 18 16 15 42 42 H 1.07996 * 120.53996 * 0.02562 * 22 21 19 43 43 H 1.09007 * 109.46978 * 59.99775 * 26 25 24 44 44 H 1.08991 * 109.47408 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47152 * 300.00305 * 26 25 24 46 46 H 1.08997 * 109.47123 * 60.00166 * 27 25 24 47 47 H 1.09004 * 109.46955 * 179.97438 * 27 25 24 48 48 H 1.08993 * 109.46899 * 299.99689 * 27 25 24 49 49 H 1.08999 * 109.47424 * 59.99741 * 28 25 24 50 50 H 1.09004 * 109.47355 * 180.02562 * 28 25 24 51 51 H 1.09003 * 109.47006 * 300.00265 * 28 25 24 52 52 H 1.07993 * 120.53662 * 180.02562 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5047 -0.8294 -1.1691 6 6 4.2937 -0.3800 -2.1941 7 1 5.2963 -0.0332 -1.9917 8 6 3.8048 -0.3699 -3.4933 9 7 2.7416 -1.0817 -3.8018 10 14 4.6562 0.6536 -4.8037 11 1 5.7027 -0.1641 -5.4682 12 1 3.6592 1.0957 -5.8115 13 1 5.2834 1.8427 -4.1730 14 6 4.1053 -1.4266 0.0315 15 6 3.5708 -0.6945 1.2664 16 6 2.0407 -0.7227 1.2487 17 1 1.6968 -1.7569 1.2358 18 7 1.5264 -0.0521 2.4453 19 6 1.3983 -0.7370 3.5990 20 8 1.7091 -1.9112 3.6465 21 6 0.8734 -0.0620 4.8050 22 6 0.5146 1.2904 4.7738 23 7 0.0454 1.8525 5.8739 24 6 -0.0765 1.1614 6.9903 25 6 -0.6115 1.8495 8.2197 26 6 0.4350 1.7890 9.3341 27 6 -0.9228 3.3111 7.8912 28 6 -1.8897 1.1471 8.6818 29 7 0.2544 -0.1130 7.0651 30 6 0.7265 -0.7559 6.0114 31 1 -0.3635 0.5129 0.8904 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7220 -1.2973 35 1 1.7617 -0.1599 -2.1389 36 1 2.4001 -1.0749 -4.7098 37 1 3.8376 -2.4817 0.0878 38 1 5.1898 -1.3267 -0.0142 39 1 3.9158 0.3393 1.2542 40 1 3.9333 -1.1888 2.1677 41 1 1.2779 0.8847 2.4074 42 1 0.6156 1.8641 3.8645 43 1 1.3457 2.2894 9.0049 44 1 0.0483 2.2870 10.2231 45 1 0.6569 0.7478 9.5681 46 1 -1.6683 3.3542 7.0973 47 1 -1.3101 3.8087 8.7804 48 1 -0.0121 3.8113 7.5621 49 1 -1.6680 0.1058 8.9157 50 1 -2.2770 1.6450 9.5707 51 1 -2.6353 1.1902 7.8878 52 1 0.9949 -1.7996 6.0804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945807146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:42 Heat of formation + Delta-G solvation = -0.426683 kcal Electronic energy + Delta-G solvation = -30726.350844 eV Core-core repulsion = 26725.204223 eV Total energy + Delta-G solvation = -4001.146620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.52250 -40.99211 -39.20700 -37.64814 -36.25991 -35.03966 -34.10710 -33.51738 -32.68843 -31.00471 -28.26414 -28.18770 -27.55701 -27.25717 -26.04867 -25.40065 -23.94946 -22.52325 -22.02213 -21.09012 -20.86455 -19.20934 -18.83790 -18.42535 -17.43020 -17.11186 -16.71173 -16.51703 -15.86945 -15.78615 -15.55997 -15.49162 -15.27102 -14.91533 -14.73312 -14.65453 -14.54046 -14.46712 -14.21482 -13.53819 -13.23750 -13.18171 -13.11445 -12.92888 -12.87485 -12.82448 -12.55393 -12.53390 -12.47721 -12.14156 -12.04551 -12.03512 -11.93471 -11.85820 -11.84481 -11.74468 -11.57693 -11.29837 -10.99503 -10.69758 -10.55985 -10.39221 -10.06254 -8.70357 -7.88002 -5.33478 -0.71232 -0.09471 1.47789 1.49347 1.58977 1.69772 1.94727 2.51592 2.64616 2.65224 2.94461 3.27402 3.32391 3.54856 3.64519 3.72521 3.83793 3.85419 3.99822 4.00197 4.02472 4.19743 4.34127 4.35687 4.57245 4.58319 4.67561 4.72386 4.78395 4.80083 4.84262 4.88995 4.93397 4.97086 4.99379 5.00773 5.03091 5.07702 5.12189 5.14548 5.30614 5.32550 5.34891 5.36459 5.46748 5.50255 5.50779 5.65967 5.73882 5.76035 6.38499 6.42800 6.87371 7.07631 7.14547 7.84014 8.36658 9.18810 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.002067 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.162178 B =13540.323247 C =13811.397684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.263 4.263 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.269 1.269 14 C 0.144 3.856 15 C -0.126 4.126 16 C 0.170 3.830 17 H 0.062 0.938 18 N -0.699 5.699 19 C 0.571 3.429 20 O -0.569 6.569 21 C -0.250 4.250 22 C 0.193 3.807 23 N -0.521 5.521 24 C 0.338 3.662 25 C -0.007 4.007 26 C -0.132 4.132 27 C -0.124 4.124 28 C -0.132 4.132 29 N -0.525 5.525 30 C 0.204 3.796 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.042 0.958 34 H -0.008 1.008 35 H 0.063 0.937 36 H 0.251 0.749 37 H 0.007 0.993 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.412 0.588 42 H 0.201 0.799 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.048 0.952 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 9.719 25.118 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 H 0.096 0.904 4 C 0.061 3.939 5 N -0.333 5.333 6 C -0.393 4.393 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.795 3.205 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.194 1.194 14 C 0.017 3.983 15 C -0.166 4.166 16 C 0.066 3.934 17 H 0.080 0.920 18 N -0.349 5.349 19 C 0.357 3.643 20 O -0.449 6.449 21 C -0.257 4.257 22 C 0.025 3.975 23 N -0.234 5.234 24 C 0.072 3.928 25 C -0.009 4.009 26 C -0.190 4.190 27 C -0.182 4.182 28 C -0.190 4.190 29 N -0.238 5.238 30 C 0.037 3.963 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.010 0.990 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.249 0.751 42 H 0.217 0.783 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.067 0.933 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.641 9.336 25.792 29.075 hybrid contribution 0.841 -0.313 -2.217 2.391 sum -8.800 9.023 23.575 26.733 Atomic orbital electron populations 1.21695 0.93584 1.01554 1.02337 1.21904 0.96479 1.00091 0.94326 0.90423 1.20606 0.82450 0.95689 0.95123 1.44369 1.02308 1.69858 1.16747 1.19488 0.98365 1.34858 0.86566 0.91542 1.25803 0.99444 1.00217 0.98996 1.70181 1.27180 1.41727 1.18899 0.85294 0.77433 0.78967 0.78832 1.21465 1.21783 1.19365 1.20969 0.96891 0.93915 0.86482 1.22201 0.95242 1.01362 0.97816 1.20722 0.93230 0.96296 0.83168 0.92024 1.45888 1.64972 1.14952 1.09119 1.17985 0.77428 0.85852 0.82997 1.90793 1.51803 1.17269 1.85043 1.21642 1.09269 0.97977 0.96841 1.23953 0.85753 0.90308 0.97456 1.68417 1.15905 1.39392 0.99684 1.23976 0.88040 0.86721 0.94062 1.19670 0.96786 0.95821 0.88650 1.21830 0.97149 1.02717 0.97334 1.21695 1.02085 0.92285 1.02089 1.21832 0.94401 1.00817 1.01973 1.68381 1.13734 1.10526 1.31114 1.23646 0.85876 1.00806 0.85973 0.90557 0.92439 0.93848 0.99004 0.91912 0.94038 0.97504 0.92399 0.91287 0.91926 0.75053 0.78266 0.93323 0.89197 0.92232 0.92590 0.90175 0.92613 0.92237 0.89202 0.93302 0.79951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.03 71.98 0.65 -3.05 16 2 C -0.11 -3.59 2.46 -10.72 -0.03 -3.62 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.19 8.69 4.58 86.36 0.40 9.08 16 5 N -0.61 -30.14 2.99 -699.10 -2.09 -32.23 16 6 C -0.26 -14.19 9.58 84.04 0.81 -13.39 16 7 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 8 C -0.05 -2.70 4.92 84.87 0.42 -2.28 16 9 N -0.93 -54.40 11.19 21.65 0.24 -54.16 16 10 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.14 6.07 6.52 86.36 0.56 6.64 16 15 C -0.13 -4.29 5.65 30.67 0.17 -4.12 16 16 C 0.17 5.40 1.88 45.02 0.08 5.49 16 17 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16 18 N -0.70 -16.48 4.32 -445.28 -1.92 -18.40 16 19 C 0.57 14.82 7.75 86.78 0.67 15.49 16 20 O -0.57 -19.36 16.11 -3.89 -0.06 -19.43 16 21 C -0.25 -5.22 5.91 -19.91 -0.12 -5.34 16 22 C 0.19 3.27 10.81 85.06 0.92 4.19 16 23 N -0.52 -9.81 8.98 -186.79 -1.68 -11.49 16 24 C 0.34 6.47 6.25 138.71 0.87 7.34 16 25 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 26 C -0.13 -1.58 8.37 71.98 0.60 -0.98 16 27 C -0.12 -1.46 7.66 71.98 0.55 -0.91 16 28 C -0.13 -1.57 8.37 71.98 0.60 -0.97 16 29 N -0.52 -11.00 9.77 -186.80 -1.82 -12.83 16 30 C 0.20 4.38 10.88 85.06 0.93 5.31 16 31 H 0.08 1.59 7.36 -2.39 -0.02 1.57 16 32 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 35 H 0.06 3.28 6.06 -2.39 -0.01 3.26 16 36 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.41 6.89 6.44 -92.71 -0.60 6.29 16 42 H 0.20 2.03 6.54 -2.91 -0.02 2.01 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.83 8.01 -2.39 -0.02 0.81 16 46 H 0.05 0.74 8.04 -2.39 -0.02 0.72 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 0.74 8.04 -2.39 -0.02 0.72 16 49 H 0.06 0.82 8.01 -2.39 -0.02 0.80 16 50 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.18 3.73 7.74 -2.91 -0.02 3.71 16 Total: -1.00 -68.66 411.44 3.04 -65.63 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.31 Total: 18.14 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 8.04 Total: 18.74 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -7.28 Total: -129.11 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.06 Total: -19.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.66 3.04 -65.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945807146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.200 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds