Wall clock time and date at job start Wed Apr 1 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46164 * 2 1 4 4 C 1.53041 * 109.45946 * 119.95698 * 2 1 3 5 5 C 1.53188 * 109.31547 * 181.38559 * 4 2 1 6 6 N 1.46925 * 108.77652 * 305.36330 * 5 4 2 7 7 C 1.36933 * 120.63452 * 233.63040 * 6 5 4 8 8 H 1.07995 * 120.00040 * 36.14682 * 7 6 5 9 9 C 1.38813 * 120.00337 * 216.14955 * 7 6 5 10 10 N 1.31623 * 119.99680 * 359.31327 * 9 7 6 11 11 Si 1.86795 * 120.00287 * 179.31249 * 9 7 6 12 12 H 1.48503 * 109.47213 * 59.99927 * 11 9 7 13 13 H 1.48499 * 109.47143 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47179 * 300.00049 * 11 9 7 15 15 C 1.46931 * 118.73761 * 53.60788 * 6 5 4 16 16 C 1.53040 * 109.46348 * 240.02367 * 2 1 3 17 17 H 1.09001 * 109.49636 * 58.66317 * 16 2 1 18 18 N 1.46500 * 109.49601 * 298.60213 * 16 2 1 19 19 C 1.34784 * 120.00277 * 158.09648 * 18 16 2 20 20 O 1.21629 * 119.99461 * 5.01390 * 19 18 16 21 21 C 1.47159 * 120.00015 * 185.00767 * 19 18 16 22 22 C 1.38398 * 126.88589 * 4.59915 * 21 19 18 23 23 C 1.39681 * 105.35995 * 179.91109 * 22 21 19 24 24 N 1.30861 * 107.85753 * 0.34891 * 23 22 21 25 25 N 1.28443 * 110.93164 * 359.77678 * 24 23 22 26 26 C 1.46498 * 125.19427 * 179.97438 * 25 24 23 27 27 C 1.52997 * 109.47162 * 274.96295 * 26 25 24 28 28 C 1.53775 * 113.61402 * 270.94537 * 27 26 25 29 29 C 1.53779 * 87.08228 * 220.01577 * 28 27 26 30 30 C 1.53773 * 113.61552 * 173.44621 * 27 26 25 31 31 H 1.08996 * 109.46933 * 175.19910 * 1 2 3 32 32 H 1.08998 * 109.46861 * 295.20113 * 1 2 3 33 33 H 1.09001 * 109.46888 * 55.20580 * 1 2 3 34 34 H 1.09007 * 109.49875 * 301.33598 * 4 2 1 35 35 H 1.08997 * 109.49866 * 61.43139 * 4 2 1 36 36 H 1.09003 * 109.59038 * 185.57687 * 5 4 2 37 37 H 1.08997 * 109.70314 * 65.22087 * 5 4 2 38 38 H 0.97000 * 119.99706 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.59005 * 186.60552 * 15 6 5 40 40 H 1.08997 * 109.58535 * 66.17704 * 15 6 5 41 41 H 0.97006 * 120.00147 * 338.09395 * 18 16 2 42 42 H 1.08004 * 127.32575 * 359.97438 * 22 21 19 43 43 H 1.08000 * 126.06494 * 180.10536 * 23 22 21 44 44 H 1.08998 * 109.46753 * 34.96136 * 26 25 24 45 45 H 1.08995 * 109.47087 * 154.95709 * 26 25 24 46 46 H 1.09002 * 112.85069 * 42.24456 * 27 26 25 47 47 H 1.09008 * 113.61563 * 334.56720 * 28 27 26 48 48 H 1.08997 * 113.61994 * 105.46661 * 28 27 26 49 49 H 1.08995 * 113.61796 * 270.87813 * 29 28 27 50 50 H 1.09005 * 113.61663 * 139.97487 * 29 28 27 51 51 H 1.09002 * 113.61892 * 254.53110 * 30 27 26 52 52 H 1.08995 * 113.61810 * 25.43290 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5713 -0.6884 1.2645 6 7 4.0679 -1.2489 0.0003 7 6 4.9757 -2.2741 0.0005 8 1 4.9206 -3.0440 0.7557 9 6 5.9670 -2.3236 -0.9700 10 7 6.0260 -1.3925 -1.8985 11 14 7.2170 -3.7115 -0.9584 12 1 6.5139 -5.0122 -1.0970 13 1 8.1621 -3.5360 -2.0903 14 1 7.9692 -3.6895 0.3218 15 6 3.5715 -0.6889 -1.2641 16 6 2.0400 -0.7210 -1.2499 17 1 1.6573 -0.2211 -2.1398 18 7 1.5795 -2.1116 -1.2343 19 6 1.5106 -2.8117 -2.3839 20 8 1.9160 -2.3206 -3.4202 21 6 0.9450 -4.1703 -2.3853 22 6 0.3654 -4.8299 -1.3156 23 6 -0.0154 -6.0784 -1.8130 24 7 0.3297 -6.1300 -3.0743 25 7 0.8920 -5.0352 -3.4414 26 6 1.3996 -4.7566 -4.7871 27 6 2.8213 -5.3061 -4.9197 28 6 3.9104 -4.3043 -4.5012 29 6 4.7282 -4.8126 -5.7003 30 6 3.3893 -5.2077 -6.3453 31 1 -0.3633 -1.0240 -0.0860 32 1 -0.3633 0.4376 0.9298 33 1 -0.3633 0.5864 -0.8439 34 1 1.6572 -0.2204 2.1399 35 1 1.6978 -1.7554 1.2386 36 1 3.9417 -1.2842 2.0987 37 1 3.9164 0.3402 1.3686 38 1 6.7189 -1.4269 -2.5764 39 1 3.9417 -1.2849 -2.0981 40 1 3.9144 0.3406 -1.3673 41 1 1.3243 -2.5287 -0.3964 42 1 0.2343 -4.4580 -0.3101 43 1 -0.5039 -6.8632 -1.2546 44 1 0.7551 -5.2347 -5.5247 45 1 1.4089 -3.6799 -4.9562 46 1 2.9376 -6.2923 -4.4704 47 1 3.6035 -3.2623 -4.5921 48 1 4.3640 -4.5302 -3.5362 49 1 5.3670 -5.6635 -5.4639 50 1 5.2546 -4.0227 -6.2361 51 1 3.4221 -6.1630 -6.8692 52 1 2.9399 -4.4128 -6.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966130410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:45 Heat of formation + Delta-G solvation = 78.025753 kcal Electronic energy + Delta-G solvation = -33281.345297 eV Core-core repulsion = 29283.600630 eV Total energy + Delta-G solvation = -3997.744667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.31151 -39.42295 -38.60281 -37.39058 -34.18251 -33.29008 -32.59860 -31.08786 -30.71706 -28.89179 -28.02944 -27.27856 -25.32590 -24.19941 -23.57605 -22.91279 -22.04971 -21.17837 -21.07351 -19.70153 -19.19560 -18.64672 -17.82350 -16.72138 -15.96251 -15.80364 -15.22999 -15.11365 -14.88481 -14.37277 -14.19187 -13.96893 -13.84233 -13.70131 -13.55201 -13.39901 -13.22556 -12.94878 -12.64495 -12.56432 -12.12038 -11.95901 -11.88693 -11.57923 -11.40667 -11.31856 -11.09144 -10.83599 -10.79541 -10.61836 -10.54129 -10.50795 -10.22712 -10.18849 -10.00452 -9.97253 -9.71975 -9.53733 -9.34480 -8.93603 -8.78105 -8.44303 -8.33962 -6.50169 -5.75000 -3.28774 1.60130 2.61625 2.82241 3.37323 3.42985 3.43781 3.63901 3.79958 4.49268 4.58329 4.79809 4.82799 4.90265 4.99925 5.14361 5.19405 5.23898 5.33925 5.36394 5.37333 5.47874 5.53055 5.54682 5.56041 5.78460 5.81422 5.87358 5.90575 5.92965 5.99271 6.01310 6.09887 6.14345 6.14919 6.28959 6.36681 6.39477 6.44961 6.53898 6.58029 6.65963 6.68034 6.76687 6.81825 6.90884 6.97211 7.01726 7.40451 7.78112 7.82387 8.02977 8.29355 8.55993 8.70966 9.26674 9.85745 10.45414 11.30900 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008142 B = 0.005908 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3438.213113 B = 4738.550295 C = 6747.335143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.254 4.254 8 H 0.058 0.942 9 C 0.017 3.983 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.159 3.841 16 C 0.127 3.873 17 H 0.073 0.927 18 N -0.680 5.680 19 C 0.589 3.411 20 O -0.540 6.540 21 C -0.018 4.018 22 C -0.199 4.199 23 C -0.009 4.009 24 N -0.287 5.287 25 N -0.251 5.251 26 C 0.123 3.877 27 C -0.127 4.127 28 C -0.129 4.129 29 C -0.143 4.143 30 C -0.125 4.125 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.254 0.746 39 H 0.108 0.892 40 H 0.023 0.977 41 H 0.396 0.604 42 H 0.155 0.845 43 H 0.181 0.819 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 -3.291 -1.665 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.384 4.384 8 H 0.076 0.924 9 C -0.182 4.182 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.210 1.210 15 C 0.033 3.967 16 C 0.022 3.978 17 H 0.091 0.909 18 N -0.330 5.330 19 C 0.373 3.627 20 O -0.418 6.418 21 C -0.147 4.147 22 C -0.228 4.228 23 C -0.184 4.184 24 N -0.120 5.120 25 N -0.038 5.038 26 C 0.004 3.996 27 C -0.147 4.147 28 C -0.166 4.166 29 C -0.180 4.180 30 C -0.163 4.163 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.041 0.959 41 H 0.232 0.768 42 H 0.173 0.827 43 H 0.198 0.802 44 H 0.109 0.891 45 H 0.142 0.858 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.466 -3.549 -3.634 12.541 hybrid contribution 0.636 -0.598 1.298 1.564 sum -10.830 -4.147 -2.336 11.830 Atomic orbital electron populations 1.21871 0.96032 1.01456 1.00965 1.21316 0.94536 0.99925 0.95519 0.90360 1.22088 0.99380 0.99364 0.96034 1.20952 0.90526 0.96502 0.90468 1.43864 1.48817 1.39197 0.99005 1.18946 1.04869 1.00897 1.13725 0.92444 1.25236 0.97008 0.97167 0.98810 1.69873 1.34152 1.33834 1.16016 0.86521 0.81823 0.82130 0.77168 1.21059 1.21536 1.20970 1.21313 0.86011 0.97854 0.91540 1.21888 0.99628 0.79571 0.96759 0.90870 1.45517 1.65480 1.13815 1.08230 1.16751 0.78497 0.82826 0.84618 1.90702 1.48752 1.70398 1.31974 1.21622 1.08336 0.95237 0.89538 1.22168 1.05869 0.95753 0.99032 1.23449 1.05294 0.98531 0.91165 1.73125 1.14215 1.07995 1.16655 1.45725 1.39810 1.08206 1.10094 1.22389 0.94943 1.04459 0.77850 1.22948 0.92759 1.00463 0.98483 1.23064 0.95132 1.00171 0.98228 1.22781 0.96004 1.00992 0.98251 1.22839 0.97121 1.01499 0.94882 0.92977 0.93091 0.93142 0.92815 0.92789 0.92891 0.96467 0.93530 0.87448 0.95935 0.76823 0.82736 0.80184 0.89140 0.85814 0.89149 0.87638 0.91626 0.90744 0.91239 0.91577 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.11 37.16 0.34 -1.44 16 2 C -0.09 -1.40 2.47 -90.58 -0.22 -1.62 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.96 5.20 -26.61 -0.14 -2.10 16 5 C 0.14 2.75 6.52 -3.71 -0.02 2.73 16 6 N -0.59 -13.71 2.90 -172.33 -0.50 -14.21 16 7 C -0.25 -6.72 9.54 -15.06 -0.14 -6.86 16 8 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 9 C 0.02 0.48 5.26 -17.43 -0.09 0.39 16 10 N -0.90 -25.35 10.82 55.49 0.60 -24.75 16 11 Si 0.89 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.16 3.65 4.77 -3.71 -0.02 3.63 16 16 C 0.13 2.29 2.17 -67.81 -0.15 2.14 16 17 H 0.07 1.35 7.75 -51.93 -0.40 0.94 16 18 N -0.68 -11.64 4.21 -54.85 -0.23 -11.87 16 19 C 0.59 10.81 7.69 -12.64 -0.10 10.72 16 20 O -0.54 -10.98 11.85 5.25 0.06 -10.92 16 21 C -0.02 -0.31 6.96 -82.06 -0.57 -0.88 16 22 C -0.20 -2.86 10.50 -38.98 -0.41 -3.27 16 23 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 24 N -0.29 -4.54 11.90 30.59 0.36 -4.18 16 25 N -0.25 -4.09 3.35 -57.15 -0.19 -4.28 16 26 C 0.12 1.80 5.83 -4.04 -0.02 1.78 16 27 C -0.13 -1.89 3.96 -89.82 -0.36 -2.25 16 28 C -0.13 -2.29 7.29 -25.92 -0.19 -2.48 16 29 C -0.14 -2.11 8.08 -25.92 -0.21 -2.32 16 30 C -0.13 -1.56 7.64 -25.92 -0.20 -1.76 16 31 H 0.05 0.62 7.33 -51.93 -0.38 0.24 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 36 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 2.89 5.72 -51.93 -0.30 2.59 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.40 6.19 5.61 -40.82 -0.23 5.96 16 42 H 0.16 1.81 7.61 -52.48 -0.40 1.41 16 43 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 1.93 5.64 -51.93 -0.29 1.64 16 46 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.11 2.09 6.08 -51.92 -0.32 1.77 16 48 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -29.92 401.05 -10.11 -40.03 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.53 Total: 11.26 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.71 Total: -3.93 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.04 Total: -59.29 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.06 Total: -10.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.92 -10.11 -40.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966130410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.058 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds