Wall clock time and date at job start Wed Apr 1 2020 03:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46164 * 2 1 4 4 C 1.53041 * 109.45946 * 119.95698 * 2 1 3 5 5 C 1.53188 * 109.31547 * 181.38559 * 4 2 1 6 6 N 1.46925 * 108.77652 * 305.36330 * 5 4 2 7 7 C 1.36933 * 120.63452 * 233.63040 * 6 5 4 8 8 H 1.07995 * 120.00040 * 36.14682 * 7 6 5 9 9 C 1.38813 * 120.00337 * 216.14955 * 7 6 5 10 10 N 1.31623 * 119.99680 * 359.31327 * 9 7 6 11 11 Si 1.86795 * 120.00287 * 179.31249 * 9 7 6 12 12 H 1.48503 * 109.47213 * 59.99927 * 11 9 7 13 13 H 1.48499 * 109.47143 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47179 * 300.00049 * 11 9 7 15 15 C 1.46931 * 118.73761 * 53.60788 * 6 5 4 16 16 C 1.53040 * 109.46348 * 240.02367 * 2 1 3 17 17 H 1.09001 * 109.49636 * 58.66317 * 16 2 1 18 18 N 1.46500 * 109.49601 * 298.60213 * 16 2 1 19 19 C 1.34784 * 120.00277 * 158.09648 * 18 16 2 20 20 O 1.21629 * 119.99461 * 5.01390 * 19 18 16 21 21 C 1.47159 * 120.00015 * 185.00767 * 19 18 16 22 22 C 1.38398 * 126.88589 * 4.59915 * 21 19 18 23 23 C 1.39681 * 105.35995 * 179.91109 * 22 21 19 24 24 N 1.30861 * 107.85753 * 0.34891 * 23 22 21 25 25 N 1.28443 * 110.93164 * 359.77678 * 24 23 22 26 26 C 1.46498 * 125.19427 * 179.97438 * 25 24 23 27 27 C 1.52997 * 109.47162 * 274.96295 * 26 25 24 28 28 C 1.53775 * 113.61402 * 270.94537 * 27 26 25 29 29 C 1.53779 * 87.08228 * 220.01577 * 28 27 26 30 30 C 1.53773 * 113.61552 * 173.44621 * 27 26 25 31 31 H 1.08996 * 109.46933 * 175.19910 * 1 2 3 32 32 H 1.08998 * 109.46861 * 295.20113 * 1 2 3 33 33 H 1.09001 * 109.46888 * 55.20580 * 1 2 3 34 34 H 1.09007 * 109.49875 * 301.33598 * 4 2 1 35 35 H 1.08997 * 109.49866 * 61.43139 * 4 2 1 36 36 H 1.09003 * 109.59038 * 185.57687 * 5 4 2 37 37 H 1.08997 * 109.70314 * 65.22087 * 5 4 2 38 38 H 0.97000 * 119.99706 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.59005 * 186.60552 * 15 6 5 40 40 H 1.08997 * 109.58535 * 66.17704 * 15 6 5 41 41 H 0.97006 * 120.00147 * 338.09395 * 18 16 2 42 42 H 1.08004 * 127.32575 * 359.97438 * 22 21 19 43 43 H 1.08000 * 126.06494 * 180.10536 * 23 22 21 44 44 H 1.08998 * 109.46753 * 34.96136 * 26 25 24 45 45 H 1.08995 * 109.47087 * 154.95709 * 26 25 24 46 46 H 1.09002 * 112.85069 * 42.24456 * 27 26 25 47 47 H 1.09008 * 113.61563 * 334.56720 * 28 27 26 48 48 H 1.08997 * 113.61994 * 105.46661 * 28 27 26 49 49 H 1.08995 * 113.61796 * 270.87813 * 29 28 27 50 50 H 1.09005 * 113.61663 * 139.97487 * 29 28 27 51 51 H 1.09002 * 113.61892 * 254.53110 * 30 27 26 52 52 H 1.08995 * 113.61810 * 25.43290 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5713 -0.6884 1.2645 6 7 4.0679 -1.2489 0.0003 7 6 4.9757 -2.2741 0.0005 8 1 4.9206 -3.0440 0.7557 9 6 5.9670 -2.3236 -0.9700 10 7 6.0260 -1.3925 -1.8985 11 14 7.2170 -3.7115 -0.9584 12 1 6.5139 -5.0122 -1.0970 13 1 8.1621 -3.5360 -2.0903 14 1 7.9692 -3.6895 0.3218 15 6 3.5715 -0.6889 -1.2641 16 6 2.0400 -0.7210 -1.2499 17 1 1.6573 -0.2211 -2.1398 18 7 1.5795 -2.1116 -1.2343 19 6 1.5106 -2.8117 -2.3839 20 8 1.9160 -2.3206 -3.4202 21 6 0.9450 -4.1703 -2.3853 22 6 0.3654 -4.8299 -1.3156 23 6 -0.0154 -6.0784 -1.8130 24 7 0.3297 -6.1300 -3.0743 25 7 0.8920 -5.0352 -3.4414 26 6 1.3996 -4.7566 -4.7871 27 6 2.8213 -5.3061 -4.9197 28 6 3.9104 -4.3043 -4.5012 29 6 4.7282 -4.8126 -5.7003 30 6 3.3893 -5.2077 -6.3453 31 1 -0.3633 -1.0240 -0.0860 32 1 -0.3633 0.4376 0.9298 33 1 -0.3633 0.5864 -0.8439 34 1 1.6572 -0.2204 2.1399 35 1 1.6978 -1.7554 1.2386 36 1 3.9417 -1.2842 2.0987 37 1 3.9164 0.3402 1.3686 38 1 6.7189 -1.4269 -2.5764 39 1 3.9417 -1.2849 -2.0981 40 1 3.9144 0.3406 -1.3673 41 1 1.3243 -2.5287 -0.3964 42 1 0.2343 -4.4580 -0.3101 43 1 -0.5039 -6.8632 -1.2546 44 1 0.7551 -5.2347 -5.5247 45 1 1.4089 -3.6799 -4.9562 46 1 2.9376 -6.2923 -4.4704 47 1 3.6035 -3.2623 -4.5921 48 1 4.3640 -4.5302 -3.5362 49 1 5.3670 -5.6635 -5.4639 50 1 5.2546 -4.0227 -6.2361 51 1 3.4221 -6.1630 -6.8692 52 1 2.9399 -4.4128 -6.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966130410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:44 Heat of formation + Delta-G solvation = 61.316512 kcal Electronic energy + Delta-G solvation = -33282.069864 eV Core-core repulsion = 29283.600630 eV Total energy + Delta-G solvation = -3998.469234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.48723 -40.88390 -39.83593 -38.89150 -35.92401 -34.62189 -33.93186 -32.83163 -32.06841 -30.38407 -29.20622 -28.85263 -26.57784 -25.91413 -24.90994 -24.22985 -23.45921 -22.68257 -22.37671 -20.97441 -20.45035 -20.20373 -19.08427 -18.59212 -17.21032 -17.12729 -16.91076 -16.57359 -16.29641 -15.75666 -15.67736 -15.54707 -15.19242 -15.04546 -14.85709 -14.60663 -14.56593 -14.48645 -14.07932 -13.82940 -13.54553 -13.33273 -13.13544 -13.08068 -12.99440 -12.70782 -12.61767 -12.51260 -12.48606 -12.30935 -11.93066 -11.79016 -11.74948 -11.52947 -11.47106 -11.30102 -11.25570 -11.01962 -10.85590 -10.52326 -10.20767 -9.94087 -9.81909 -8.46836 -7.82480 -5.37948 0.33324 1.37440 1.38170 1.43471 1.43718 1.72126 2.27453 2.43573 2.46986 3.33038 3.40589 3.60588 3.62729 3.69967 3.76447 3.78376 3.90600 3.93648 4.03002 4.16331 4.17297 4.24339 4.38553 4.41651 4.57749 4.64687 4.71057 4.73419 4.75112 4.79283 4.84242 4.85823 4.89390 4.96754 4.98479 5.00207 5.03602 5.14875 5.20732 5.21308 5.28424 5.30780 5.47305 5.50862 5.56157 5.59677 5.64434 5.77199 5.80984 5.86578 6.48573 6.62530 7.12272 7.21507 7.31664 7.91051 8.43940 9.19115 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008142 B = 0.005908 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3438.213113 B = 4738.550295 C = 6747.335143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.599 5.599 7 C -0.252 4.252 8 H 0.059 0.941 9 C -0.034 4.034 10 N -0.922 5.922 11 Si 0.944 3.056 12 H -0.287 1.287 13 H -0.297 1.297 14 H -0.273 1.273 15 C 0.170 3.830 16 C 0.140 3.860 17 H 0.065 0.935 18 N -0.672 5.672 19 C 0.582 3.418 20 O -0.569 6.569 21 C -0.050 4.050 22 C -0.188 4.188 23 C -0.004 4.004 24 N -0.300 5.300 25 N -0.261 5.261 26 C 0.123 3.877 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.143 4.143 30 C -0.103 4.103 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.245 0.755 39 H 0.062 0.938 40 H -0.006 1.006 41 H 0.406 0.594 42 H 0.183 0.817 43 H 0.220 0.780 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.018 0.982 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 -4.778 -0.357 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.322 5.322 7 C -0.383 4.383 8 H 0.076 0.924 9 C -0.230 4.230 10 N -0.567 5.567 11 Si 0.774 3.226 12 H -0.213 1.213 13 H -0.223 1.223 14 H -0.199 1.199 15 C 0.043 3.957 16 C 0.033 3.967 17 H 0.083 0.917 18 N -0.323 5.323 19 C 0.368 3.632 20 O -0.449 6.449 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.180 4.180 24 N -0.133 5.133 25 N -0.049 5.049 26 C 0.004 3.996 27 C -0.136 4.136 28 C -0.175 4.175 29 C -0.180 4.180 30 C -0.140 4.140 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.243 0.757 42 H 0.200 0.800 43 H 0.236 0.764 44 H 0.136 0.864 45 H 0.127 0.873 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.037 0.963 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.168 -5.036 -2.278 15.208 hybrid contribution 1.483 -0.122 0.973 1.778 sum -12.685 -5.158 -1.305 13.755 Atomic orbital electron populations 1.21779 0.93007 1.02122 1.02440 1.21270 0.96872 0.99125 0.93332 0.90490 1.21966 0.95629 1.00398 0.97544 1.21147 0.93662 0.95797 0.88318 1.44025 1.48800 1.38887 1.00536 1.19201 1.04719 1.01491 1.12869 0.92359 1.25826 0.98884 0.99147 0.99159 1.70065 1.34466 1.35564 1.16632 0.85705 0.79995 0.79867 0.77054 1.21330 1.22306 1.19910 1.20957 0.89531 0.95045 0.90180 1.21557 0.95820 0.80682 0.98606 0.91673 1.45378 1.65099 1.13379 1.08431 1.17126 0.78042 0.83627 0.84446 1.90692 1.49887 1.71257 1.33065 1.21615 1.10258 0.94944 0.91086 1.22591 1.04020 0.95578 0.99463 1.24139 1.04242 0.99064 0.90542 1.73120 1.14466 1.07791 1.17892 1.45853 1.40315 1.08356 1.10350 1.22391 0.95117 1.03828 0.78296 1.22854 0.92168 0.98699 0.99903 1.22941 0.97767 0.99680 0.97136 1.22824 0.97274 1.01037 0.96894 1.22765 0.94367 1.03332 0.93567 0.92505 0.90575 0.92966 0.89164 0.92066 0.92822 0.96936 0.94595 0.92007 0.98836 0.75706 0.80015 0.76360 0.86443 0.87349 0.89764 0.90336 0.96273 0.90203 0.91241 0.88688 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.11 71.98 0.66 -2.19 16 2 C -0.09 -2.42 2.47 -10.77 -0.03 -2.45 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.20 5.20 30.67 0.16 -3.04 16 5 C 0.14 5.15 6.52 86.36 0.56 5.72 16 6 N -0.60 -28.71 2.90 -699.12 -2.03 -30.74 16 7 C -0.25 -13.67 9.54 84.03 0.80 -12.86 16 8 H 0.06 3.11 7.83 -2.91 -0.02 3.09 16 9 C -0.03 -1.91 5.26 84.86 0.45 -1.47 16 10 N -0.92 -55.51 10.82 21.65 0.23 -55.28 16 11 Si 0.94 46.64 29.55 68.60 2.03 48.67 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 13 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 14 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 15 C 0.17 8.20 4.77 86.36 0.41 8.61 16 16 C 0.14 5.10 2.17 45.07 0.10 5.20 16 17 H 0.07 2.49 7.75 -2.39 -0.02 2.47 16 18 N -0.67 -23.00 4.21 -445.68 -1.88 -24.88 16 19 C 0.58 22.00 7.69 86.58 0.67 22.67 16 20 O -0.57 -24.67 11.85 -4.12 -0.05 -24.72 16 21 C -0.05 -1.68 6.96 40.78 0.28 -1.40 16 22 C -0.19 -4.95 10.50 22.66 0.24 -4.71 16 23 C 0.00 -0.11 12.03 85.19 1.03 0.92 16 24 N -0.30 -8.93 11.90 -57.14 -0.68 -9.61 16 25 N -0.26 -8.38 3.35 -334.71 -1.12 -9.50 16 26 C 0.12 3.60 5.83 86.38 0.50 4.10 16 27 C -0.12 -3.51 3.96 -10.27 -0.04 -3.55 16 28 C -0.14 -5.28 7.29 31.12 0.23 -5.05 16 29 C -0.14 -4.32 8.08 31.12 0.25 -4.07 16 30 C -0.10 -2.43 7.64 31.12 0.24 -2.19 16 31 H 0.06 1.15 7.33 -2.39 -0.02 1.13 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.62 6.42 -2.39 -0.02 1.61 16 36 H 0.05 2.00 7.93 -2.39 -0.02 1.99 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.06 3.58 5.72 -2.39 -0.01 3.57 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.41 12.05 5.61 -92.70 -0.52 11.53 16 42 H 0.18 3.61 7.61 -2.91 -0.02 3.59 16 43 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.11 3.53 5.64 -2.39 -0.01 3.51 16 46 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.08 3.43 6.08 -2.38 -0.01 3.41 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 51 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -70.98 401.05 3.40 -67.58 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.40 Total: 34.23 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.50 Total: 4.24 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -5.48 Total: -130.00 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -70.98 3.40 -67.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966130410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.899 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds