Wall clock time and date at job start Wed Apr 1 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.45168 * 2 1 4 4 C 1.53041 * 109.45747 * 119.96964 * 2 1 3 5 5 C 1.53192 * 109.31097 * 181.38430 * 4 2 1 6 6 N 1.46923 * 108.77646 * 305.35833 * 5 4 2 7 7 C 1.36929 * 120.63317 * 233.61223 * 6 5 4 8 8 H 1.07997 * 119.99951 * 31.58980 * 7 6 5 9 9 C 1.38814 * 120.00019 * 211.58643 * 7 6 5 10 10 N 1.31625 * 119.99899 * 10.38908 * 9 7 6 11 11 Si 1.86796 * 120.00072 * 190.37967 * 9 7 6 12 12 H 1.48502 * 109.46993 * 90.00475 * 11 9 7 13 13 H 1.48507 * 109.47238 * 210.00183 * 11 9 7 14 14 H 1.48500 * 109.47259 * 330.00376 * 11 9 7 15 15 C 1.46938 * 118.75871 * 53.58876 * 6 5 4 16 16 C 1.53039 * 109.45638 * 240.03249 * 2 1 3 17 17 H 1.09002 * 109.49736 * 298.59827 * 16 2 1 18 18 N 1.46494 * 109.49873 * 58.66951 * 16 2 1 19 19 C 1.34781 * 119.99923 * 204.93784 * 18 16 2 20 20 O 1.21630 * 120.00176 * 4.79984 * 19 18 16 21 21 C 1.47161 * 120.00034 * 184.80826 * 19 18 16 22 22 C 1.38408 * 126.88314 * 5.37936 * 21 19 18 23 23 C 1.39677 * 105.35799 * 179.73909 * 22 21 19 24 24 N 1.30860 * 107.86174 * 0.25683 * 23 22 21 25 25 N 1.28448 * 110.92765 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.18978 * 179.97438 * 25 24 23 27 27 C 1.53003 * 109.47055 * 85.89012 * 26 25 24 28 28 C 1.53782 * 113.61465 * 272.49376 * 27 26 25 29 29 C 1.53775 * 87.08162 * 220.01883 * 28 27 26 30 30 C 1.53782 * 87.08182 * 25.43663 * 29 28 27 31 31 H 1.08991 * 109.47427 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46695 * 299.97227 * 1 2 3 33 33 H 1.09001 * 109.46858 * 59.96601 * 1 2 3 34 34 H 1.09005 * 109.49327 * 301.33282 * 4 2 1 35 35 H 1.08995 * 109.50324 * 61.42556 * 4 2 1 36 36 H 1.08999 * 109.58853 * 65.15216 * 5 4 2 37 37 H 1.09003 * 109.58297 * 185.43283 * 5 4 2 38 38 H 0.96992 * 119.99787 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.61282 * 186.64085 * 15 6 5 40 40 H 1.08998 * 109.56394 * 66.21925 * 15 6 5 41 41 H 0.97000 * 120.00029 * 24.93060 * 18 16 2 42 42 H 1.07995 * 127.31860 * 359.97438 * 22 21 19 43 43 H 1.08002 * 126.06822 * 180.25912 * 23 22 21 44 44 H 1.09000 * 109.47086 * 205.89286 * 26 25 24 45 45 H 1.09006 * 109.47321 * 325.88991 * 26 25 24 46 46 H 1.09000 * 112.84950 * 43.80513 * 27 26 25 47 47 H 1.08997 * 113.61392 * 334.57629 * 28 27 26 48 48 H 1.09001 * 113.61117 * 105.47122 * 28 27 26 49 49 H 1.08997 * 113.61785 * 270.88431 * 29 28 27 50 50 H 1.08999 * 113.61385 * 139.98267 * 29 28 27 51 51 H 1.09000 * 113.61212 * 220.02015 * 30 29 28 52 52 H 1.09004 * 113.69077 * 89.12498 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2490 0.0001 7 6 4.9759 -2.2739 0.0001 8 1 4.9673 -3.0029 0.7968 9 6 5.9075 -2.3758 -1.0240 10 7 6.0561 -1.3865 -1.8794 11 14 6.9505 -3.9168 -1.1879 12 1 6.2534 -4.8958 -2.0602 13 1 8.2624 -3.5651 -1.7884 14 1 7.1648 -4.5146 0.1544 15 6 3.5713 -0.6894 -1.2646 16 6 2.0398 -0.7208 -1.2501 17 1 1.6972 -1.7555 -1.2385 18 7 1.5256 -0.0487 -2.4459 19 6 1.3983 -0.7319 -3.6007 20 8 1.6268 -1.9262 -3.6291 21 6 0.9829 -0.0329 -4.8272 22 6 0.7884 1.3287 -4.9821 23 6 0.4090 1.4989 -6.3155 24 7 0.3831 0.3182 -6.8793 25 7 0.7083 -0.5982 -6.0401 26 6 0.7803 -2.0304 -6.3397 27 6 2.1584 -2.3623 -6.9157 28 6 2.2464 -2.1896 -8.4412 29 6 3.0911 -3.4744 -8.4590 30 6 2.3815 -3.8654 -7.1519 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6572 -0.2207 2.1398 35 1 1.6977 -1.7556 1.2384 36 1 3.9143 0.3408 1.3674 37 1 3.9415 -1.2826 2.0999 38 1 6.7073 -1.4575 -2.5947 39 1 3.9411 -1.2857 -2.0987 40 1 3.9148 0.3399 -1.3681 41 1 1.2767 0.8880 -2.4066 42 1 0.9086 2.0966 -4.2324 43 1 0.1780 2.4382 -6.7960 44 1 0.6216 -2.6014 -5.4249 45 1 0.0107 -2.2886 -7.0672 46 1 2.9713 -1.8803 -6.3727 47 1 1.2868 -2.2908 -8.9481 48 1 2.7971 -1.3007 -8.7489 49 1 4.1597 -3.2961 -8.3393 50 1 2.8624 -4.1358 -9.2947 51 1 3.0413 -4.3294 -6.4188 52 1 1.4587 -4.4251 -7.3050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966130413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:59 Heat of formation + Delta-G solvation = 74.973011 kcal Electronic energy + Delta-G solvation = -32021.113836 eV Core-core repulsion = 28023.236791 eV Total energy + Delta-G solvation = -3997.877044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.45248 -39.41277 -38.84352 -37.52014 -34.45818 -33.45721 -32.88545 -31.12582 -30.80402 -28.69375 -28.17537 -27.33078 -25.64324 -24.22808 -23.77957 -23.15647 -21.98984 -21.21565 -20.76093 -19.87819 -19.50269 -19.22990 -17.74548 -16.82719 -16.09487 -16.02817 -15.59059 -15.23477 -14.88867 -14.57363 -14.30831 -14.04747 -13.93282 -13.74087 -13.56816 -13.46680 -13.35243 -13.07977 -12.66675 -12.51335 -12.43437 -12.09549 -12.04009 -11.67768 -11.60792 -11.57349 -10.87421 -10.84617 -10.77374 -10.71610 -10.66456 -10.48690 -10.47135 -10.28858 -10.17068 -10.03488 -9.91767 -9.56698 -9.50031 -9.10103 -8.92683 -8.56027 -8.44835 -6.61763 -5.76545 -3.26005 1.43762 2.46917 2.69206 3.39240 3.45057 3.46579 3.47193 3.56087 4.40873 4.50626 4.59741 4.62243 4.69715 4.79224 4.86651 5.12542 5.16294 5.23091 5.24824 5.28385 5.38892 5.50153 5.51956 5.57366 5.62543 5.67280 5.71607 5.78685 5.83425 5.86737 5.89900 5.99660 6.01550 6.02359 6.10364 6.15674 6.23126 6.37186 6.42637 6.45004 6.50783 6.53564 6.71420 6.74614 6.82083 6.89500 6.96403 7.27926 7.72871 7.78594 7.83535 8.15353 8.47608 8.51741 9.22532 9.84292 10.40845 11.30739 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.004292 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.134179 B = 6522.662045 C = 9006.461864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.901 5.901 11 Si 0.903 3.097 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.168 3.832 16 C 0.125 3.875 17 H 0.084 0.916 18 N -0.701 5.701 19 C 0.585 3.415 20 O -0.532 6.532 21 C -0.027 4.027 22 C -0.196 4.196 23 C -0.009 4.009 24 N -0.280 5.280 25 N -0.251 5.251 26 C 0.126 3.874 27 C -0.120 4.120 28 C -0.132 4.132 29 C -0.142 4.142 30 C -0.128 4.128 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.095 0.905 40 H 0.018 0.982 41 H 0.395 0.605 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 4.116 -7.460 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.545 5.545 11 Si 0.733 3.267 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.041 3.959 16 C 0.020 3.980 17 H 0.103 0.897 18 N -0.351 5.351 19 C 0.369 3.631 20 O -0.409 6.409 21 C -0.156 4.156 22 C -0.225 4.225 23 C -0.184 4.184 24 N -0.113 5.113 25 N -0.038 5.038 26 C 0.007 3.993 27 C -0.139 4.139 28 C -0.169 4.169 29 C -0.179 4.179 30 C -0.166 4.166 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.036 0.964 41 H 0.229 0.771 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.136 0.864 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.989 2.543 -8.629 15.800 hybrid contribution 0.661 0.357 0.580 0.949 sum -12.328 2.900 -8.050 15.006 Atomic orbital electron populations 1.21857 0.95976 1.01578 1.00793 1.21302 0.94584 0.99731 0.95478 0.91399 1.22075 0.98975 1.00024 0.95426 1.20973 0.90743 0.96518 0.90206 1.43910 1.48286 1.39728 0.99109 1.19146 1.07460 1.02196 1.09775 0.91742 1.25156 0.97071 0.97354 0.99440 1.69959 1.36331 1.30171 1.17990 0.86281 0.79595 0.82908 0.77916 1.21299 1.21695 1.20349 1.21114 0.86075 0.97590 0.91130 1.22109 0.98515 0.96440 0.80976 0.89745 1.45754 1.65289 1.14150 1.09880 1.16874 0.77843 0.86293 0.82052 1.90813 1.50614 1.14205 1.85235 1.21630 1.10715 0.93546 0.89689 1.22205 1.07790 0.93966 0.98562 1.23491 1.05845 0.95907 0.93198 1.73162 1.19195 0.97952 1.20979 1.45765 1.45221 1.07751 1.05110 1.22301 0.98746 0.74316 1.03973 1.22873 0.96539 0.98087 0.96378 1.22970 1.00423 0.98153 0.95345 1.22800 0.99647 0.97642 0.97828 1.22853 1.01038 0.94819 0.97927 0.92945 0.93082 0.93202 0.92571 0.92117 0.96380 0.92600 0.93654 0.88704 0.96411 0.77120 0.82484 0.80050 0.86358 0.88821 0.88328 0.90010 0.91616 0.90087 0.91407 0.90578 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.42 2.27 -90.58 -0.21 -1.62 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.05 5.36 -26.61 -0.14 -2.20 16 5 C 0.14 2.88 6.51 -3.71 -0.02 2.85 16 6 N -0.59 -14.61 2.99 -172.31 -0.51 -15.12 16 7 C -0.26 -7.07 9.58 -15.06 -0.14 -7.22 16 8 H 0.06 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.01 0.25 5.05 -17.43 -0.09 0.16 16 10 N -0.90 -26.45 11.05 55.49 0.61 -25.84 16 11 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.17 3.99 4.83 -3.70 -0.02 3.97 16 16 C 0.12 2.33 2.10 -67.82 -0.14 2.19 16 17 H 0.08 1.81 7.51 -51.93 -0.39 1.42 16 18 N -0.70 -11.19 4.35 -54.85 -0.24 -11.43 16 19 C 0.59 10.28 7.75 -12.64 -0.10 10.18 16 20 O -0.53 -11.09 14.32 5.25 0.08 -11.01 16 21 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 22 C -0.20 -2.47 10.50 -38.98 -0.41 -2.88 16 23 C -0.01 -0.11 12.03 -17.43 -0.21 -0.31 16 24 N -0.28 -3.96 11.90 30.59 0.36 -3.60 16 25 N -0.25 -3.71 3.35 -57.14 -0.19 -3.90 16 26 C 0.13 1.69 5.68 -4.04 -0.02 1.67 16 27 C -0.12 -1.60 3.96 -89.80 -0.36 -1.96 16 28 C -0.13 -1.50 7.63 -25.92 -0.20 -1.70 16 29 C -0.14 -1.53 8.08 -25.92 -0.21 -1.74 16 30 C -0.13 -1.52 7.64 -25.92 -0.20 -1.71 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 2.67 6.11 -51.93 -0.32 2.35 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.39 5.07 7.38 -40.82 -0.30 4.77 16 42 H 0.16 1.52 7.62 -52.49 -0.40 1.12 16 43 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.12 1.73 6.22 -51.93 -0.32 1.41 16 45 H 0.09 1.04 7.84 -51.93 -0.41 0.64 16 46 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -32.15 409.72 -10.25 -42.40 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.81 Total: 7.96 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.70 Total: -2.78 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.03 Total: -59.89 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.15 -10.25 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966130413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.375 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds