Wall clock time and date at job start Wed Apr 1 2020 03:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.45168 * 2 1 4 4 C 1.53041 * 109.45747 * 119.96964 * 2 1 3 5 5 C 1.53192 * 109.31097 * 181.38430 * 4 2 1 6 6 N 1.46923 * 108.77646 * 305.35833 * 5 4 2 7 7 C 1.36929 * 120.63317 * 233.61223 * 6 5 4 8 8 H 1.07997 * 119.99951 * 31.58980 * 7 6 5 9 9 C 1.38814 * 120.00019 * 211.58643 * 7 6 5 10 10 N 1.31625 * 119.99899 * 10.38908 * 9 7 6 11 11 Si 1.86796 * 120.00072 * 190.37967 * 9 7 6 12 12 H 1.48502 * 109.46993 * 90.00475 * 11 9 7 13 13 H 1.48507 * 109.47238 * 210.00183 * 11 9 7 14 14 H 1.48500 * 109.47259 * 330.00376 * 11 9 7 15 15 C 1.46938 * 118.75871 * 53.58876 * 6 5 4 16 16 C 1.53039 * 109.45638 * 240.03249 * 2 1 3 17 17 H 1.09002 * 109.49736 * 298.59827 * 16 2 1 18 18 N 1.46494 * 109.49873 * 58.66951 * 16 2 1 19 19 C 1.34781 * 119.99923 * 204.93784 * 18 16 2 20 20 O 1.21630 * 120.00176 * 4.79984 * 19 18 16 21 21 C 1.47161 * 120.00034 * 184.80826 * 19 18 16 22 22 C 1.38408 * 126.88314 * 5.37936 * 21 19 18 23 23 C 1.39677 * 105.35799 * 179.73909 * 22 21 19 24 24 N 1.30860 * 107.86174 * 0.25683 * 23 22 21 25 25 N 1.28448 * 110.92765 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.18978 * 179.97438 * 25 24 23 27 27 C 1.53003 * 109.47055 * 85.89012 * 26 25 24 28 28 C 1.53782 * 113.61465 * 272.49376 * 27 26 25 29 29 C 1.53775 * 87.08162 * 220.01883 * 28 27 26 30 30 C 1.53782 * 87.08182 * 25.43663 * 29 28 27 31 31 H 1.08991 * 109.47427 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46695 * 299.97227 * 1 2 3 33 33 H 1.09001 * 109.46858 * 59.96601 * 1 2 3 34 34 H 1.09005 * 109.49327 * 301.33282 * 4 2 1 35 35 H 1.08995 * 109.50324 * 61.42556 * 4 2 1 36 36 H 1.08999 * 109.58853 * 65.15216 * 5 4 2 37 37 H 1.09003 * 109.58297 * 185.43283 * 5 4 2 38 38 H 0.96992 * 119.99787 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.61282 * 186.64085 * 15 6 5 40 40 H 1.08998 * 109.56394 * 66.21925 * 15 6 5 41 41 H 0.97000 * 120.00029 * 24.93060 * 18 16 2 42 42 H 1.07995 * 127.31860 * 359.97438 * 22 21 19 43 43 H 1.08002 * 126.06822 * 180.25912 * 23 22 21 44 44 H 1.09000 * 109.47086 * 205.89286 * 26 25 24 45 45 H 1.09006 * 109.47321 * 325.88991 * 26 25 24 46 46 H 1.09000 * 112.84950 * 43.80513 * 27 26 25 47 47 H 1.08997 * 113.61392 * 334.57629 * 28 27 26 48 48 H 1.09001 * 113.61117 * 105.47122 * 28 27 26 49 49 H 1.08997 * 113.61785 * 270.88431 * 29 28 27 50 50 H 1.08999 * 113.61385 * 139.98267 * 29 28 27 51 51 H 1.09000 * 113.61212 * 220.02015 * 30 29 28 52 52 H 1.09004 * 113.69077 * 89.12498 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2490 0.0001 7 6 4.9759 -2.2739 0.0001 8 1 4.9673 -3.0029 0.7968 9 6 5.9075 -2.3758 -1.0240 10 7 6.0561 -1.3865 -1.8794 11 14 6.9505 -3.9168 -1.1879 12 1 6.2534 -4.8958 -2.0602 13 1 8.2624 -3.5651 -1.7884 14 1 7.1648 -4.5146 0.1544 15 6 3.5713 -0.6894 -1.2646 16 6 2.0398 -0.7208 -1.2501 17 1 1.6972 -1.7555 -1.2385 18 7 1.5256 -0.0487 -2.4459 19 6 1.3983 -0.7319 -3.6007 20 8 1.6268 -1.9262 -3.6291 21 6 0.9829 -0.0329 -4.8272 22 6 0.7884 1.3287 -4.9821 23 6 0.4090 1.4989 -6.3155 24 7 0.3831 0.3182 -6.8793 25 7 0.7083 -0.5982 -6.0401 26 6 0.7803 -2.0304 -6.3397 27 6 2.1584 -2.3623 -6.9157 28 6 2.2464 -2.1896 -8.4412 29 6 3.0911 -3.4744 -8.4590 30 6 2.3815 -3.8654 -7.1519 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6572 -0.2207 2.1398 35 1 1.6977 -1.7556 1.2384 36 1 3.9143 0.3408 1.3674 37 1 3.9415 -1.2826 2.0999 38 1 6.7073 -1.4575 -2.5947 39 1 3.9411 -1.2857 -2.0987 40 1 3.9148 0.3399 -1.3681 41 1 1.2767 0.8880 -2.4066 42 1 0.9086 2.0966 -4.2324 43 1 0.1780 2.4382 -6.7960 44 1 0.6216 -2.6014 -5.4249 45 1 0.0107 -2.2886 -7.0672 46 1 2.9713 -1.8803 -6.3727 47 1 1.2868 -2.2908 -8.9481 48 1 2.7971 -1.3007 -8.7489 49 1 4.1597 -3.2961 -8.3393 50 1 2.8624 -4.1358 -9.2947 51 1 3.0413 -4.3294 -6.4188 52 1 1.4587 -4.4251 -7.3050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966130413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:58 Heat of formation + Delta-G solvation = 55.759238 kcal Electronic energy + Delta-G solvation = -32021.947007 eV Core-core repulsion = 28023.236791 eV Total energy + Delta-G solvation = -3998.710216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.52451 -40.87641 -39.83673 -39.07112 -36.15662 -34.89564 -34.08243 -32.87393 -32.13728 -30.20580 -29.21007 -28.95657 -26.60678 -25.98673 -25.08382 -24.33040 -23.28784 -22.69954 -22.07461 -21.36407 -20.59385 -20.46847 -19.00223 -18.75108 -17.33973 -17.17726 -17.06121 -16.71058 -16.31460 -15.86957 -15.69159 -15.36072 -15.27805 -15.18516 -15.04308 -14.84860 -14.53509 -14.45051 -14.08732 -13.78673 -13.57552 -13.43302 -13.27696 -13.12022 -13.04053 -12.77925 -12.60534 -12.57127 -12.36539 -12.17069 -11.91869 -11.85033 -11.75841 -11.63142 -11.49192 -11.44353 -11.28527 -11.20937 -10.98305 -10.60003 -10.32213 -10.00264 -9.94676 -8.64960 -7.89968 -5.42080 0.25340 1.36802 1.39465 1.42328 1.49563 1.69549 2.13135 2.26519 2.46629 3.26417 3.40526 3.52268 3.59687 3.64588 3.73642 3.78820 3.85273 3.88509 4.00627 4.11244 4.16475 4.19645 4.30521 4.47999 4.49315 4.57118 4.66642 4.69670 4.72027 4.73996 4.74445 4.78323 4.87122 4.93239 4.97590 4.99197 5.00979 5.12961 5.17360 5.18880 5.20790 5.28767 5.41436 5.45303 5.45951 5.53246 5.56498 5.60412 5.77343 5.78328 6.36019 6.49665 7.08150 7.11446 7.19118 7.82969 8.33170 9.13634 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.004292 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.134179 B = 6522.662045 C = 9006.461864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.609 5.609 7 C -0.264 4.264 8 H 0.067 0.933 9 C -0.047 4.047 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.293 1.293 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.181 3.819 16 C 0.143 3.857 17 H 0.053 0.947 18 N -0.688 5.688 19 C 0.581 3.419 20 O -0.575 6.575 21 C -0.060 4.060 22 C -0.178 4.178 23 C -0.005 4.005 24 N -0.291 5.291 25 N -0.261 5.261 26 C 0.128 3.872 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.134 4.134 30 C -0.128 4.128 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.055 0.945 38 H 0.246 0.754 39 H 0.042 0.958 40 H 0.000 1.000 41 H 0.414 0.586 42 H 0.189 0.811 43 H 0.222 0.778 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.051 0.949 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 5.697 -7.481 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.394 4.394 8 H 0.084 0.916 9 C -0.243 4.243 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.220 1.220 13 H -0.218 1.218 14 H -0.185 1.185 15 C 0.054 3.946 16 C 0.037 3.963 17 H 0.071 0.929 18 N -0.339 5.339 19 C 0.367 3.633 20 O -0.455 6.455 21 C -0.189 4.189 22 C -0.207 4.207 23 C -0.180 4.180 24 N -0.123 5.123 25 N -0.048 5.048 26 C 0.009 3.991 27 C -0.147 4.147 28 C -0.156 4.156 29 C -0.172 4.172 30 C -0.166 4.166 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.251 0.749 42 H 0.206 0.794 43 H 0.238 0.762 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.112 0.888 51 H 0.070 0.930 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.440 4.162 -8.612 18.163 hybrid contribution 1.417 -0.066 0.611 1.544 sum -14.024 4.096 -8.001 16.657 Atomic orbital electron populations 1.21774 0.92999 1.01636 1.02851 1.21270 0.96893 0.99492 0.92697 0.90029 1.21974 0.95680 1.00237 0.97603 1.21181 0.93546 0.96215 0.87971 1.44189 1.48420 1.39685 1.00975 1.19491 1.07479 1.02985 1.09486 0.91582 1.25888 0.98724 1.00053 0.99597 1.70132 1.37036 1.31972 1.18510 0.85353 0.77779 0.79608 0.78302 1.21998 1.21801 1.18527 1.20775 0.89415 0.95049 0.89339 1.21587 0.94904 0.95985 0.83847 0.92876 1.45508 1.64656 1.14898 1.08822 1.17295 0.76973 0.85941 0.83051 1.90790 1.52487 1.16308 1.85953 1.21518 1.13284 0.94800 0.89252 1.22660 1.05410 0.93070 0.99592 1.24194 1.04351 0.96564 0.92937 1.73156 1.19350 0.98657 1.21141 1.45868 1.45731 1.08168 1.05060 1.22283 0.99199 0.74072 1.03584 1.22793 0.95278 0.99011 0.97574 1.22924 1.01341 0.98002 0.93317 1.22767 0.98858 0.97683 0.97868 1.22910 1.01848 0.93834 0.98000 0.93920 0.90271 0.91913 0.88487 0.93152 0.95989 0.92649 0.94505 0.93935 0.98232 0.74905 0.79390 0.76188 0.88444 0.86252 0.92777 0.87953 0.92522 0.91188 0.88847 0.92980 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.02 71.98 0.65 -2.32 16 2 C -0.08 -2.44 2.27 -10.77 -0.02 -2.46 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 5 C 0.14 5.44 6.51 86.36 0.56 6.01 16 6 N -0.61 -31.26 2.99 -699.08 -2.09 -33.35 16 7 C -0.26 -15.09 9.58 84.04 0.81 -14.29 16 8 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 9 C -0.05 -2.75 5.05 84.86 0.43 -2.32 16 10 N -0.93 -57.72 11.05 21.65 0.24 -57.48 16 11 Si 0.96 47.36 29.57 68.60 2.03 49.39 16 12 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 14 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.18 9.05 4.83 86.36 0.42 9.47 16 16 C 0.14 5.47 2.10 45.07 0.09 5.56 16 17 H 0.05 2.39 7.51 -2.39 -0.02 2.37 16 18 N -0.69 -22.16 4.35 -445.69 -1.94 -24.10 16 19 C 0.58 21.34 7.75 86.59 0.67 22.01 16 20 O -0.58 -25.98 14.32 -4.13 -0.06 -26.04 16 21 C -0.06 -1.86 6.96 40.79 0.28 -1.58 16 22 C -0.18 -4.09 10.50 22.66 0.24 -3.85 16 23 C -0.01 -0.11 12.03 85.19 1.02 0.92 16 24 N -0.29 -7.77 11.90 -57.14 -0.68 -8.45 16 25 N -0.26 -7.72 3.35 -334.68 -1.12 -8.84 16 26 C 0.13 3.54 5.68 86.38 0.49 4.04 16 27 C -0.13 -3.61 3.96 -10.27 -0.04 -3.66 16 28 C -0.12 -2.66 7.63 31.12 0.24 -2.42 16 29 C -0.13 -2.86 8.08 31.12 0.25 -2.61 16 30 C -0.13 -3.15 7.64 31.12 0.24 -2.91 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.23 7.36 -2.39 -0.02 1.21 16 34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 2.18 7.94 -2.39 -0.02 2.17 16 38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.04 2.57 6.11 -2.39 -0.01 2.55 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.41 9.99 7.38 -92.71 -0.68 9.30 16 42 H 0.19 2.96 7.62 -2.91 -0.02 2.93 16 43 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.10 3.09 6.22 -2.39 -0.01 3.07 16 45 H 0.12 2.57 7.84 -2.38 -0.02 2.56 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.10 1.89 7.90 -2.39 -0.02 1.87 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.11 2.08 8.10 -2.38 -0.02 2.06 16 Total: -1.00 -76.65 409.72 3.10 -73.56 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.22 Total: 29.12 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.49 Total: 6.18 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -5.59 Total: -132.21 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -76.65 3.10 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966130413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.315 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds