Wall clock time and date at job start Wed Apr 1 2020 03:59:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 109.45168 * 2 1
4 4 C 1.53041 * 109.45747 * 119.96964 * 2 1 3
5 5 C 1.53192 * 109.31097 * 181.38430 * 4 2 1
6 6 N 1.46923 * 108.77646 * 305.35833 * 5 4 2
7 7 C 1.36929 * 120.63317 * 233.61223 * 6 5 4
8 8 H 1.07997 * 119.99951 * 31.58980 * 7 6 5
9 9 C 1.38814 * 120.00019 * 211.58643 * 7 6 5
10 10 N 1.31625 * 119.99899 * 10.38908 * 9 7 6
11 11 Si 1.86796 * 120.00072 * 190.37967 * 9 7 6
12 12 H 1.48502 * 109.46993 * 90.00475 * 11 9 7
13 13 H 1.48507 * 109.47238 * 210.00183 * 11 9 7
14 14 H 1.48500 * 109.47259 * 330.00376 * 11 9 7
15 15 C 1.46938 * 118.75871 * 53.58876 * 6 5 4
16 16 C 1.53039 * 109.45638 * 240.03249 * 2 1 3
17 17 H 1.09002 * 109.49736 * 298.59827 * 16 2 1
18 18 N 1.46494 * 109.49873 * 58.66951 * 16 2 1
19 19 C 1.34781 * 119.99923 * 204.93784 * 18 16 2
20 20 O 1.21630 * 120.00176 * 4.79984 * 19 18 16
21 21 C 1.47161 * 120.00034 * 184.80826 * 19 18 16
22 22 C 1.38408 * 126.88314 * 5.37936 * 21 19 18
23 23 C 1.39677 * 105.35799 * 179.73909 * 22 21 19
24 24 N 1.30860 * 107.86174 * 0.25683 * 23 22 21
25 25 N 1.28448 * 110.92765 * 0.02562 * 24 23 22
26 26 C 1.46500 * 125.18978 * 179.97438 * 25 24 23
27 27 C 1.53003 * 109.47055 * 85.89012 * 26 25 24
28 28 C 1.53782 * 113.61465 * 272.49376 * 27 26 25
29 29 C 1.53775 * 87.08162 * 220.01883 * 28 27 26
30 30 C 1.53782 * 87.08182 * 25.43663 * 29 28 27
31 31 H 1.08991 * 109.47427 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46695 * 299.97227 * 1 2 3
33 33 H 1.09001 * 109.46858 * 59.96601 * 1 2 3
34 34 H 1.09005 * 109.49327 * 301.33282 * 4 2 1
35 35 H 1.08995 * 109.50324 * 61.42556 * 4 2 1
36 36 H 1.08999 * 109.58853 * 65.15216 * 5 4 2
37 37 H 1.09003 * 109.58297 * 185.43283 * 5 4 2
38 38 H 0.96992 * 119.99787 * 179.97438 * 10 9 7
39 39 H 1.09000 * 109.61282 * 186.64085 * 15 6 5
40 40 H 1.08998 * 109.56394 * 66.21925 * 15 6 5
41 41 H 0.97000 * 120.00029 * 24.93060 * 18 16 2
42 42 H 1.07995 * 127.31860 * 359.97438 * 22 21 19
43 43 H 1.08002 * 126.06822 * 180.25912 * 23 22 21
44 44 H 1.09000 * 109.47086 * 205.89286 * 26 25 24
45 45 H 1.09006 * 109.47321 * 325.88991 * 26 25 24
46 46 H 1.09000 * 112.84950 * 43.80513 * 27 26 25
47 47 H 1.08997 * 113.61392 * 334.57629 * 28 27 26
48 48 H 1.09001 * 113.61117 * 105.47122 * 28 27 26
49 49 H 1.08997 * 113.61785 * 270.88431 * 29 28 27
50 50 H 1.08999 * 113.61385 * 139.98267 * 29 28 27
51 51 H 1.09000 * 113.61212 * 220.02015 * 30 29 28
52 52 H 1.09004 * 113.69077 * 89.12498 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8930 1.0277 0.0000
4 6 2.0398 -0.7208 1.2501
5 6 3.5714 -0.6887 1.2642
6 7 4.0679 -1.2490 0.0001
7 6 4.9759 -2.2739 0.0001
8 1 4.9673 -3.0029 0.7968
9 6 5.9075 -2.3758 -1.0240
10 7 6.0561 -1.3865 -1.8794
11 14 6.9505 -3.9168 -1.1879
12 1 6.2534 -4.8958 -2.0602
13 1 8.2624 -3.5651 -1.7884
14 1 7.1648 -4.5146 0.1544
15 6 3.5713 -0.6894 -1.2646
16 6 2.0398 -0.7208 -1.2501
17 1 1.6972 -1.7555 -1.2385
18 7 1.5256 -0.0487 -2.4459
19 6 1.3983 -0.7319 -3.6007
20 8 1.6268 -1.9262 -3.6291
21 6 0.9829 -0.0329 -4.8272
22 6 0.7884 1.3287 -4.9821
23 6 0.4090 1.4989 -6.3155
24 7 0.3831 0.3182 -6.8793
25 7 0.7083 -0.5982 -6.0401
26 6 0.7803 -2.0304 -6.3397
27 6 2.1584 -2.3623 -6.9157
28 6 2.2464 -2.1896 -8.4412
29 6 3.0911 -3.4744 -8.4590
30 6 2.3815 -3.8654 -7.1519
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5134 0.8903
33 1 -0.3633 0.5144 -0.8897
34 1 1.6572 -0.2207 2.1398
35 1 1.6977 -1.7556 1.2384
36 1 3.9143 0.3408 1.3674
37 1 3.9415 -1.2826 2.0999
38 1 6.7073 -1.4575 -2.5947
39 1 3.9411 -1.2857 -2.0987
40 1 3.9148 0.3399 -1.3681
41 1 1.2767 0.8880 -2.4066
42 1 0.9086 2.0966 -4.2324
43 1 0.1780 2.4382 -6.7960
44 1 0.6216 -2.6014 -5.4249
45 1 0.0107 -2.2886 -7.0672
46 1 2.9713 -1.8803 -6.3727
47 1 1.2868 -2.2908 -8.9481
48 1 2.7971 -1.3007 -8.7489
49 1 4.1597 -3.2961 -8.3393
50 1 2.8624 -4.1358 -9.2947
51 1 3.0413 -4.3294 -6.4188
52 1 1.4587 -4.4251 -7.3050
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000966130413.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:58
Heat of formation + Delta-G solvation = 55.759238 kcal
Electronic energy + Delta-G solvation = -32021.947007 eV
Core-core repulsion = 28023.236791 eV
Total energy + Delta-G solvation = -3998.710216 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-43.52451 -40.87641 -39.83673 -39.07112 -36.15662 -34.89564 -34.08243 -32.87393
-32.13728 -30.20580 -29.21007 -28.95657 -26.60678 -25.98673 -25.08382 -24.33040
-23.28784 -22.69954 -22.07461 -21.36407 -20.59385 -20.46847 -19.00223 -18.75108
-17.33973 -17.17726 -17.06121 -16.71058 -16.31460 -15.86957 -15.69159 -15.36072
-15.27805 -15.18516 -15.04308 -14.84860 -14.53509 -14.45051 -14.08732 -13.78673
-13.57552 -13.43302 -13.27696 -13.12022 -13.04053 -12.77925 -12.60534 -12.57127
-12.36539 -12.17069 -11.91869 -11.85033 -11.75841 -11.63142 -11.49192 -11.44353
-11.28527 -11.20937 -10.98305 -10.60003 -10.32213 -10.00264 -9.94676 -8.64960
-7.89968 -5.42080 0.25340 1.36802 1.39465 1.42328 1.49563 1.69549
2.13135 2.26519 2.46629 3.26417 3.40526 3.52268 3.59687 3.64588
3.73642 3.78820 3.85273 3.88509 4.00627 4.11244 4.16475 4.19645
4.30521 4.47999 4.49315 4.57118 4.66642 4.69670 4.72027 4.73996
4.74445 4.78323 4.87122 4.93239 4.97590 4.99197 5.00979 5.12961
5.17360 5.18880 5.20790 5.28767 5.41436 5.45303 5.45951 5.53246
5.56498 5.60412 5.77343 5.78328 6.36019 6.49665 7.08150 7.11446
7.19118 7.82969 8.33170 9.13634
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.008547 B = 0.004292 C = 0.003108
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3275.134179 B = 6522.662045 C = 9006.461864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.084 4.084
3 H 0.081 0.919
4 C -0.116 4.116
5 C 0.136 3.864
6 N -0.609 5.609
7 C -0.264 4.264
8 H 0.067 0.933
9 C -0.047 4.047
10 N -0.931 5.931
11 Si 0.961 3.039
12 H -0.293 1.293
13 H -0.292 1.292
14 H -0.261 1.261
15 C 0.181 3.819
16 C 0.143 3.857
17 H 0.053 0.947
18 N -0.688 5.688
19 C 0.581 3.419
20 O -0.575 6.575
21 C -0.060 4.060
22 C -0.178 4.178
23 C -0.005 4.005
24 N -0.291 5.291
25 N -0.261 5.261
26 C 0.128 3.872
27 C -0.127 4.127
28 C -0.119 4.119
29 C -0.134 4.134
30 C -0.128 4.128
31 H 0.042 0.958
32 H 0.078 0.922
33 H 0.062 0.938
34 H 0.097 0.903
35 H 0.050 0.950
36 H 0.022 0.978
37 H 0.055 0.945
38 H 0.246 0.754
39 H 0.042 0.958
40 H 0.000 1.000
41 H 0.414 0.586
42 H 0.189 0.811
43 H 0.222 0.778
44 H 0.097 0.903
45 H 0.119 0.881
46 H 0.054 0.946
47 H 0.102 0.898
48 H 0.056 0.944
49 H 0.069 0.931
50 H 0.093 0.907
51 H 0.051 0.949
52 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.528 5.697 -7.481 18.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.104 4.104
3 H 0.100 0.900
4 C -0.155 4.155
5 C 0.011 3.989
6 N -0.333 5.333
7 C -0.394 4.394
8 H 0.084 0.916
9 C -0.243 4.243
10 N -0.577 5.577
11 Si 0.790 3.210
12 H -0.220 1.220
13 H -0.218 1.218
14 H -0.185 1.185
15 C 0.054 3.946
16 C 0.037 3.963
17 H 0.071 0.929
18 N -0.339 5.339
19 C 0.367 3.633
20 O -0.455 6.455
21 C -0.189 4.189
22 C -0.207 4.207
23 C -0.180 4.180
24 N -0.123 5.123
25 N -0.048 5.048
26 C 0.009 3.991
27 C -0.147 4.147
28 C -0.156 4.156
29 C -0.172 4.172
30 C -0.166 4.166
31 H 0.061 0.939
32 H 0.097 0.903
33 H 0.081 0.919
34 H 0.115 0.885
35 H 0.068 0.932
36 H 0.040 0.960
37 H 0.074 0.926
38 H 0.055 0.945
39 H 0.061 0.939
40 H 0.018 0.982
41 H 0.251 0.749
42 H 0.206 0.794
43 H 0.238 0.762
44 H 0.116 0.884
45 H 0.137 0.863
46 H 0.072 0.928
47 H 0.120 0.880
48 H 0.075 0.925
49 H 0.088 0.912
50 H 0.112 0.888
51 H 0.070 0.930
52 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -15.440 4.162 -8.612 18.163
hybrid contribution 1.417 -0.066 0.611 1.544
sum -14.024 4.096 -8.001 16.657
Atomic orbital electron populations
1.21774 0.92999 1.01636 1.02851 1.21270 0.96893 0.99492 0.92697
0.90029 1.21974 0.95680 1.00237 0.97603 1.21181 0.93546 0.96215
0.87971 1.44189 1.48420 1.39685 1.00975 1.19491 1.07479 1.02985
1.09486 0.91582 1.25888 0.98724 1.00053 0.99597 1.70132 1.37036
1.31972 1.18510 0.85353 0.77779 0.79608 0.78302 1.21998 1.21801
1.18527 1.20775 0.89415 0.95049 0.89339 1.21587 0.94904 0.95985
0.83847 0.92876 1.45508 1.64656 1.14898 1.08822 1.17295 0.76973
0.85941 0.83051 1.90790 1.52487 1.16308 1.85953 1.21518 1.13284
0.94800 0.89252 1.22660 1.05410 0.93070 0.99592 1.24194 1.04351
0.96564 0.92937 1.73156 1.19350 0.98657 1.21141 1.45868 1.45731
1.08168 1.05060 1.22283 0.99199 0.74072 1.03584 1.22793 0.95278
0.99011 0.97574 1.22924 1.01341 0.98002 0.93317 1.22767 0.98858
0.97683 0.97868 1.22910 1.01848 0.93834 0.98000 0.93920 0.90271
0.91913 0.88487 0.93152 0.95989 0.92649 0.94505 0.93935 0.98232
0.74905 0.79390 0.76188 0.88444 0.86252 0.92777 0.87953 0.92522
0.91188 0.88847 0.92980 0.87512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 9.02 71.98 0.65 -2.32 16
2 C -0.08 -2.44 2.27 -10.77 -0.02 -2.46 16
3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
4 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16
5 C 0.14 5.44 6.51 86.36 0.56 6.01 16
6 N -0.61 -31.26 2.99 -699.08 -2.09 -33.35 16
7 C -0.26 -15.09 9.58 84.04 0.81 -14.29 16
8 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16
9 C -0.05 -2.75 5.05 84.86 0.43 -2.32 16
10 N -0.93 -57.72 11.05 21.65 0.24 -57.48 16
11 Si 0.96 47.36 29.57 68.60 2.03 49.39 16
12 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16
13 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16
14 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16
15 C 0.18 9.05 4.83 86.36 0.42 9.47 16
16 C 0.14 5.47 2.10 45.07 0.09 5.56 16
17 H 0.05 2.39 7.51 -2.39 -0.02 2.37 16
18 N -0.69 -22.16 4.35 -445.69 -1.94 -24.10 16
19 C 0.58 21.34 7.75 86.59 0.67 22.01 16
20 O -0.58 -25.98 14.32 -4.13 -0.06 -26.04 16
21 C -0.06 -1.86 6.96 40.79 0.28 -1.58 16
22 C -0.18 -4.09 10.50 22.66 0.24 -3.85 16
23 C -0.01 -0.11 12.03 85.19 1.02 0.92 16
24 N -0.29 -7.77 11.90 -57.14 -0.68 -8.45 16
25 N -0.26 -7.72 3.35 -334.68 -1.12 -8.84 16
26 C 0.13 3.54 5.68 86.38 0.49 4.04 16
27 C -0.13 -3.61 3.96 -10.27 -0.04 -3.66 16
28 C -0.12 -2.66 7.63 31.12 0.24 -2.42 16
29 C -0.13 -2.86 8.08 31.12 0.25 -2.61 16
30 C -0.13 -3.15 7.64 31.12 0.24 -2.91 16
31 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16
32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.06 1.23 7.36 -2.39 -0.02 1.21 16
34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16
35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
37 H 0.05 2.18 7.94 -2.39 -0.02 2.17 16
38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16
39 H 0.04 2.57 6.11 -2.39 -0.01 2.55 16
40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16
41 H 0.41 9.99 7.38 -92.71 -0.68 9.30 16
42 H 0.19 2.96 7.62 -2.91 -0.02 2.93 16
43 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16
44 H 0.10 3.09 6.22 -2.39 -0.01 3.07 16
45 H 0.12 2.57 7.84 -2.38 -0.02 2.56 16
46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
47 H 0.10 1.89 7.90 -2.39 -0.02 1.87 16
48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
51 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
52 H 0.11 2.08 8.10 -2.38 -0.02 2.06 16
Total: -1.00 -76.65 409.72 3.10 -73.56
By element:
Atomic # 1 Polarization: 28.89 SS G_CDS: 0.22 Total: 29.12 kcal
Atomic # 6 Polarization: -0.31 SS G_CDS: 6.49 Total: 6.18 kcal
Atomic # 7 Polarization: -126.63 SS G_CDS: -5.59 Total: -132.21 kcal
Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal
Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal
Total: -76.65 3.10 -73.56 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000966130413.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.315 kcal
(2) G-P(sol) polarization free energy of solvation -76.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds