Wall clock time and date at job start Wed Apr 1 2020 04:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46194 * 2 1 4 4 C 1.53042 * 109.45989 * 119.96115 * 2 1 3 5 5 C 1.53187 * 109.31281 * 181.38480 * 4 2 1 6 6 N 1.46919 * 108.77969 * 305.36405 * 5 4 2 7 7 C 1.36932 * 120.63577 * 233.63222 * 6 5 4 8 8 H 1.08005 * 119.99435 * 31.64354 * 7 6 5 9 9 C 1.38810 * 120.00256 * 211.64760 * 7 6 5 10 10 N 1.31619 * 120.00013 * 10.16198 * 9 7 6 11 11 Si 1.86800 * 119.99980 * 190.16426 * 9 7 6 12 12 H 1.48504 * 109.47350 * 59.99803 * 11 9 7 13 13 H 1.48497 * 109.47153 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47288 * 299.99943 * 11 9 7 15 15 C 1.47001 * 118.75464 * 53.60600 * 6 5 4 16 16 C 1.53044 * 109.46147 * 240.02876 * 2 1 3 17 17 H 1.09002 * 109.49576 * 58.62697 * 16 2 1 18 18 N 1.46501 * 109.49594 * 298.56795 * 16 2 1 19 19 C 1.34770 * 120.00296 * 155.06646 * 18 16 2 20 20 O 1.21629 * 119.99781 * 4.94470 * 19 18 16 21 21 C 1.47167 * 120.00232 * 184.94910 * 19 18 16 22 22 C 1.38410 * 126.88003 * 99.65120 * 21 19 18 23 23 C 1.50700 * 127.32235 * 359.97438 * 22 21 19 24 24 C 1.53781 * 113.61171 * 219.11929 * 23 22 21 25 25 C 1.53955 * 87.01751 * 220.05177 * 24 23 22 26 26 C 1.53779 * 87.11371 * 25.36696 * 25 24 23 27 27 C 1.39677 * 105.35229 * 179.97438 * 22 21 19 28 28 N 1.30862 * 107.86628 * 359.97438 * 27 22 21 29 29 N 1.28444 * 110.92508 * 0.02562 * 28 27 22 30 30 C 1.46496 * 125.18967 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46885 * 299.97375 * 1 2 3 33 33 H 1.08999 * 109.46830 * 59.97381 * 1 2 3 34 34 H 1.09001 * 109.49506 * 301.33636 * 4 2 1 35 35 H 1.09001 * 109.49957 * 61.43263 * 4 2 1 36 36 H 1.09001 * 109.58552 * 65.15104 * 5 4 2 37 37 H 1.08994 * 109.58788 * 185.43053 * 5 4 2 38 38 H 0.97000 * 119.99539 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.63065 * 186.62769 * 15 6 5 40 40 H 1.09004 * 109.58192 * 66.17347 * 15 6 5 41 41 H 0.97000 * 119.99956 * 335.06374 * 18 16 2 42 42 H 1.08991 * 112.84898 * 350.32399 * 23 22 21 43 43 H 1.08991 * 113.61733 * 334.57267 * 24 23 22 44 44 H 1.09003 * 113.61020 * 105.47514 * 24 23 22 45 45 H 1.09000 * 113.53642 * 270.81271 * 25 24 23 46 46 H 1.09000 * 113.74362 * 139.95111 * 25 24 23 47 47 H 1.09000 * 113.61419 * 220.08993 * 26 25 24 48 48 H 1.09001 * 113.68994 * 89.19218 * 26 25 24 49 49 H 1.08001 * 126.06299 * 180.25763 * 27 22 21 50 50 H 1.08997 * 109.47226 * 85.06247 * 30 29 28 51 51 H 1.08997 * 109.47429 * 205.06403 * 30 29 28 52 52 H 1.09009 * 109.47109 * 325.06205 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2488 0.0002 7 6 4.9758 -2.2740 0.0003 8 1 4.9662 -3.0036 0.7965 9 6 5.9083 -2.3753 -1.0229 10 7 6.0548 -1.3873 -1.8801 11 14 6.9552 -3.9140 -1.1834 12 1 6.0748 -5.0933 -1.3823 13 1 7.8661 -3.7737 -2.3478 14 1 7.7575 -4.0981 0.0526 15 6 3.5714 -0.6887 -1.2650 16 6 2.0399 -0.7209 -1.2500 17 1 1.6568 -0.2213 -2.1398 18 7 1.5802 -2.1118 -1.2341 19 6 1.4529 -2.7928 -2.3901 20 8 1.8045 -2.2841 -3.4374 21 6 0.8884 -4.1519 -2.3852 22 6 -0.4098 -4.5132 -2.7010 23 6 -1.5357 -3.6029 -3.1191 24 6 -2.8976 -3.9929 -2.5209 25 6 -3.5084 -3.6453 -3.8907 26 6 -2.1274 -3.9475 -4.4961 27 6 -0.4545 -5.9011 -2.5498 28 7 0.7333 -6.3026 -2.1751 29 7 1.5409 -5.3095 -2.0690 30 6 2.9472 -5.4039 -1.6696 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 1.6572 -0.2205 2.1399 35 1 1.6978 -1.7555 1.2385 36 1 3.9143 0.3410 1.3673 37 1 3.9416 -1.2822 2.1000 38 1 6.7063 -1.4583 -2.5953 39 1 3.9412 -1.2846 -2.0993 40 1 3.9143 0.3408 -1.3682 41 1 1.3674 -2.5426 -0.3915 42 1 -1.2926 -2.5471 -3.0002 43 1 -2.9752 -5.0491 -2.2636 44 1 -3.2254 -3.3349 -1.7160 45 1 -3.8060 -2.6007 -3.9821 46 1 -4.2870 -4.3369 -4.2123 47 1 -1.8343 -3.2531 -5.2835 48 1 -1.9928 -4.9912 -4.7804 49 1 -1.3154 -6.5315 -2.7172 50 1 3.5586 -5.6304 -2.5431 51 1 3.2670 -4.4553 -1.2385 52 1 3.0625 -6.1964 -0.9300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966196021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:14 Heat of formation + Delta-G solvation = 77.226139 kcal Electronic energy + Delta-G solvation = -33044.792724 eV Core-core repulsion = 29047.013383 eV Total energy + Delta-G solvation = -3997.779341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.34818 -39.49083 -38.56853 -37.47310 -34.20871 -33.15230 -32.81221 -31.17472 -30.90877 -29.12329 -27.43721 -27.15618 -25.59139 -25.21643 -24.20115 -23.06547 -21.90280 -21.24052 -21.15064 -19.75289 -19.00115 -18.76052 -17.80777 -16.80466 -16.01705 -15.67225 -15.59740 -15.13248 -15.02338 -14.51605 -14.29043 -14.12540 -13.91227 -13.65045 -13.36090 -13.28246 -12.88661 -12.76230 -12.70786 -12.58496 -12.44553 -12.34211 -12.12018 -11.99439 -11.63914 -11.44571 -11.15437 -10.96386 -10.85044 -10.82932 -10.59951 -10.50318 -10.48298 -10.31124 -10.26917 -10.03354 -9.82228 -9.63419 -9.49984 -8.94023 -8.56737 -8.49044 -8.43967 -6.66988 -5.84905 -3.34349 1.90490 2.46980 2.79473 3.19248 3.25012 3.33425 3.37191 3.65959 4.38533 4.53695 4.63965 4.70582 4.90159 5.01382 5.03685 5.15997 5.19595 5.28271 5.33032 5.36901 5.40145 5.43061 5.48259 5.57126 5.64869 5.73253 5.80905 5.83972 5.84221 5.88537 5.90332 5.93675 5.96640 5.99204 6.11392 6.22871 6.29809 6.31690 6.39197 6.47830 6.52382 6.59497 6.68538 6.70217 6.82484 6.92240 6.96059 7.30146 7.62376 7.70854 7.95908 8.27398 8.41131 8.60982 9.14165 9.76086 10.35006 11.22183 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.004637 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.261998 B = 6037.058062 C = 7590.869442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.259 4.259 8 H 0.062 0.938 9 C 0.011 3.989 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.161 3.839 16 C 0.124 3.876 17 H 0.076 0.924 18 N -0.684 5.684 19 C 0.588 3.412 20 O -0.524 6.524 21 C -0.014 4.014 22 C -0.153 4.153 23 C -0.033 4.033 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.129 4.129 27 C 0.002 3.998 28 N -0.290 5.290 29 N -0.267 5.267 30 C 0.081 3.919 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.256 0.744 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.178 0.822 50 H 0.083 0.917 51 H 0.113 0.887 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.294 -3.012 1.640 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.388 4.388 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.208 1.208 15 C 0.035 3.965 16 C 0.019 3.981 17 H 0.094 0.906 18 N -0.335 5.335 19 C 0.370 3.630 20 O -0.398 6.398 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.052 4.052 24 C -0.167 4.167 25 C -0.180 4.180 26 C -0.167 4.167 27 C -0.175 4.175 28 N -0.121 5.121 29 N -0.054 5.054 30 C -0.059 4.059 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.045 0.955 41 H 0.232 0.768 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.195 0.805 50 H 0.101 0.899 51 H 0.132 0.868 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.083 -3.567 1.076 15.536 hybrid contribution 0.297 -0.353 0.079 0.468 sum -14.786 -3.919 1.155 15.341 Atomic orbital electron populations 1.21857 0.95919 1.01443 1.01023 1.21314 0.94665 0.99905 0.95360 0.90294 1.22081 0.99267 0.99339 0.96155 1.20937 0.90592 0.96594 0.90285 1.43947 1.48514 1.39504 0.99090 1.19019 1.07918 1.02285 1.09621 0.92053 1.25157 0.96932 0.97173 0.99672 1.69918 1.36052 1.30149 1.17760 0.86530 0.80615 0.82985 0.77450 1.20915 1.21507 1.20809 1.21230 0.86278 0.98000 0.91027 1.21910 0.99271 0.79862 0.97069 0.90554 1.45850 1.65757 1.14177 1.07698 1.16907 0.78260 0.83269 0.84611 1.90837 1.48210 1.69123 1.31666 1.21621 0.93928 0.89040 1.09734 1.20366 0.92883 0.94544 1.08596 1.20775 0.90441 0.97665 0.96328 1.22986 0.95175 1.01738 0.96778 1.22853 0.96806 1.01513 0.96848 1.22944 0.95399 1.01983 0.96366 1.23209 0.95335 0.93406 1.05553 1.73110 1.01793 1.16467 1.20739 1.45659 1.10591 1.02479 1.46714 1.22404 0.74540 1.06670 1.02306 0.92995 0.93103 0.93050 0.92729 0.92875 0.96394 0.92851 0.93369 0.88289 0.95527 0.76823 0.88962 0.89898 0.91522 0.90318 0.91528 0.91422 0.89974 0.80459 0.89877 0.86848 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.05 37.16 0.34 -1.44 16 2 C -0.09 -1.38 2.48 -90.57 -0.22 -1.61 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.07 16 5 C 0.14 2.68 6.51 -3.72 -0.02 2.66 16 6 N -0.59 -13.30 2.90 -172.27 -0.50 -13.80 16 7 C -0.26 -6.47 9.58 -15.06 -0.14 -6.61 16 8 H 0.06 1.50 7.85 -52.48 -0.41 1.09 16 9 C 0.01 0.28 5.06 -17.43 -0.09 0.19 16 10 N -0.90 -25.15 11.04 55.49 0.61 -24.54 16 11 Si 0.89 20.53 29.57 -169.99 -5.03 15.51 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.16 3.65 4.85 -3.67 -0.02 3.63 16 16 C 0.12 2.24 2.20 -67.81 -0.15 2.09 16 17 H 0.08 1.42 7.65 -51.93 -0.40 1.03 16 18 N -0.68 -11.78 4.25 -54.85 -0.23 -12.02 16 19 C 0.59 11.17 6.62 -12.64 -0.08 11.08 16 20 O -0.52 -11.91 16.79 5.25 0.09 -11.82 16 21 C -0.01 -0.24 6.71 -82.06 -0.55 -0.79 16 22 C -0.15 -2.27 5.49 -104.02 -0.57 -2.84 16 23 C -0.03 -0.41 4.11 -90.96 -0.37 -0.78 16 24 C -0.13 -1.25 7.60 -25.83 -0.20 -1.45 16 25 C -0.14 -1.27 8.09 -25.83 -0.21 -1.47 16 26 C -0.13 -1.41 7.62 -25.92 -0.20 -1.61 16 27 C 0.00 0.03 11.20 -17.43 -0.20 -0.17 16 28 N -0.29 -4.70 11.90 30.59 0.36 -4.33 16 29 N -0.27 -4.53 3.75 -63.88 -0.24 -4.77 16 30 C 0.08 1.31 11.21 59.84 0.67 1.99 16 31 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.80 6.40 -51.93 -0.33 0.46 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.00 7.94 -51.93 -0.41 0.58 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.10 2.66 6.08 -51.93 -0.32 2.34 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.40 6.37 6.62 -40.82 -0.27 6.10 16 42 H 0.09 1.26 7.93 -51.93 -0.41 0.84 16 43 H 0.08 0.74 7.27 -51.93 -0.38 0.37 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.87 7.99 -51.93 -0.41 0.46 16 49 H 0.18 1.88 7.76 -52.49 -0.41 1.47 16 50 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.11 2.06 7.65 -51.93 -0.40 1.67 16 52 H 0.09 1.32 8.14 -51.92 -0.42 0.89 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -29.75 409.81 -9.66 -39.41 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.75 Total: 9.39 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.16 Total: 0.80 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.00 Total: -59.47 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.75 -9.66 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966196021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.639 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds