Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46194 * 2 1 4 4 C 1.53042 * 109.45989 * 119.96115 * 2 1 3 5 5 C 1.53187 * 109.31281 * 181.38480 * 4 2 1 6 6 N 1.46919 * 108.77969 * 305.36405 * 5 4 2 7 7 C 1.36932 * 120.63577 * 233.63222 * 6 5 4 8 8 H 1.08005 * 119.99435 * 31.64354 * 7 6 5 9 9 C 1.38810 * 120.00256 * 211.64760 * 7 6 5 10 10 N 1.31619 * 120.00013 * 10.16198 * 9 7 6 11 11 Si 1.86800 * 119.99980 * 190.16426 * 9 7 6 12 12 H 1.48504 * 109.47350 * 59.99803 * 11 9 7 13 13 H 1.48497 * 109.47153 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47288 * 299.99943 * 11 9 7 15 15 C 1.47001 * 118.75464 * 53.60600 * 6 5 4 16 16 C 1.53044 * 109.46147 * 240.02876 * 2 1 3 17 17 H 1.09002 * 109.49576 * 58.62697 * 16 2 1 18 18 N 1.46501 * 109.49594 * 298.56795 * 16 2 1 19 19 C 1.34770 * 120.00296 * 155.06646 * 18 16 2 20 20 O 1.21629 * 119.99781 * 4.94470 * 19 18 16 21 21 C 1.47167 * 120.00232 * 184.94910 * 19 18 16 22 22 C 1.38410 * 126.88003 * 99.65120 * 21 19 18 23 23 C 1.50700 * 127.32235 * 359.97438 * 22 21 19 24 24 C 1.53781 * 113.61171 * 219.11929 * 23 22 21 25 25 C 1.53955 * 87.01751 * 220.05177 * 24 23 22 26 26 C 1.53779 * 87.11371 * 25.36696 * 25 24 23 27 27 C 1.39677 * 105.35229 * 179.97438 * 22 21 19 28 28 N 1.30862 * 107.86628 * 359.97438 * 27 22 21 29 29 N 1.28444 * 110.92508 * 0.02562 * 28 27 22 30 30 C 1.46496 * 125.18967 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46885 * 299.97375 * 1 2 3 33 33 H 1.08999 * 109.46830 * 59.97381 * 1 2 3 34 34 H 1.09001 * 109.49506 * 301.33636 * 4 2 1 35 35 H 1.09001 * 109.49957 * 61.43263 * 4 2 1 36 36 H 1.09001 * 109.58552 * 65.15104 * 5 4 2 37 37 H 1.08994 * 109.58788 * 185.43053 * 5 4 2 38 38 H 0.97000 * 119.99539 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.63065 * 186.62769 * 15 6 5 40 40 H 1.09004 * 109.58192 * 66.17347 * 15 6 5 41 41 H 0.97000 * 119.99956 * 335.06374 * 18 16 2 42 42 H 1.08991 * 112.84898 * 350.32399 * 23 22 21 43 43 H 1.08991 * 113.61733 * 334.57267 * 24 23 22 44 44 H 1.09003 * 113.61020 * 105.47514 * 24 23 22 45 45 H 1.09000 * 113.53642 * 270.81271 * 25 24 23 46 46 H 1.09000 * 113.74362 * 139.95111 * 25 24 23 47 47 H 1.09000 * 113.61419 * 220.08993 * 26 25 24 48 48 H 1.09001 * 113.68994 * 89.19218 * 26 25 24 49 49 H 1.08001 * 126.06299 * 180.25763 * 27 22 21 50 50 H 1.08997 * 109.47226 * 85.06247 * 30 29 28 51 51 H 1.08997 * 109.47429 * 205.06403 * 30 29 28 52 52 H 1.09009 * 109.47109 * 325.06205 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2488 0.0002 7 6 4.9758 -2.2740 0.0003 8 1 4.9662 -3.0036 0.7965 9 6 5.9083 -2.3753 -1.0229 10 7 6.0548 -1.3873 -1.8801 11 14 6.9552 -3.9140 -1.1834 12 1 6.0748 -5.0933 -1.3823 13 1 7.8661 -3.7737 -2.3478 14 1 7.7575 -4.0981 0.0526 15 6 3.5714 -0.6887 -1.2650 16 6 2.0399 -0.7209 -1.2500 17 1 1.6568 -0.2213 -2.1398 18 7 1.5802 -2.1118 -1.2341 19 6 1.4529 -2.7928 -2.3901 20 8 1.8045 -2.2841 -3.4374 21 6 0.8884 -4.1519 -2.3852 22 6 -0.4098 -4.5132 -2.7010 23 6 -1.5357 -3.6029 -3.1191 24 6 -2.8976 -3.9929 -2.5209 25 6 -3.5084 -3.6453 -3.8907 26 6 -2.1274 -3.9475 -4.4961 27 6 -0.4545 -5.9011 -2.5498 28 7 0.7333 -6.3026 -2.1751 29 7 1.5409 -5.3095 -2.0690 30 6 2.9472 -5.4039 -1.6696 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 1.6572 -0.2205 2.1399 35 1 1.6978 -1.7555 1.2385 36 1 3.9143 0.3410 1.3673 37 1 3.9416 -1.2822 2.1000 38 1 6.7063 -1.4583 -2.5953 39 1 3.9412 -1.2846 -2.0993 40 1 3.9143 0.3408 -1.3682 41 1 1.3674 -2.5426 -0.3915 42 1 -1.2926 -2.5471 -3.0002 43 1 -2.9752 -5.0491 -2.2636 44 1 -3.2254 -3.3349 -1.7160 45 1 -3.8060 -2.6007 -3.9821 46 1 -4.2870 -4.3369 -4.2123 47 1 -1.8343 -3.2531 -5.2835 48 1 -1.9928 -4.9912 -4.7804 49 1 -1.3154 -6.5315 -2.7172 50 1 3.5586 -5.6304 -2.5431 51 1 3.2670 -4.4553 -1.2385 52 1 3.0625 -6.1964 -0.9300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966196021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = 60.473487 kcal Electronic energy + Delta-G solvation = -33045.519174 eV Core-core repulsion = 29047.013383 eV Total energy + Delta-G solvation = -3998.505791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.57143 -41.01031 -39.43267 -39.03413 -35.94512 -34.50472 -34.19762 -32.86356 -32.24298 -30.63948 -28.93035 -28.41373 -26.38656 -26.28602 -25.86500 -24.51652 -23.36203 -22.72547 -22.28027 -21.07879 -20.33348 -19.91335 -19.11909 -18.63266 -17.38130 -17.08505 -16.71258 -16.53969 -16.47234 -15.82750 -15.71356 -15.61070 -15.29607 -15.03695 -14.79354 -14.70052 -14.25878 -14.13037 -14.00618 -13.76195 -13.60009 -13.41860 -13.23265 -13.11190 -13.07121 -13.01443 -12.69853 -12.58645 -12.51552 -12.29386 -11.97146 -11.83923 -11.57969 -11.52526 -11.37844 -11.29020 -11.17681 -11.10644 -11.06411 -10.55251 -10.20940 -10.05252 -9.62775 -8.58554 -7.84602 -5.35858 0.61915 1.10239 1.40657 1.43253 1.50025 1.67467 1.80152 2.23096 2.47779 3.31755 3.47704 3.59847 3.69418 3.77716 3.87678 3.92770 3.96689 3.97989 4.11607 4.11839 4.17355 4.23753 4.31750 4.47703 4.50432 4.56619 4.66662 4.69390 4.72998 4.79389 4.88753 4.91763 4.95491 4.96612 5.03824 5.08400 5.16947 5.17540 5.20348 5.23243 5.25831 5.43683 5.45483 5.48953 5.53417 5.59416 5.65914 5.67771 5.73188 5.74423 6.41762 6.47931 7.05847 7.13400 7.16066 7.87236 8.40914 9.19645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.004637 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.261998 B = 6037.058062 C = 7590.869442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.137 3.863 6 N -0.600 5.600 7 C -0.250 4.250 8 H 0.070 0.930 9 C -0.043 4.043 10 N -0.934 5.934 11 Si 0.945 3.055 12 H -0.261 1.261 13 H -0.306 1.306 14 H -0.275 1.275 15 C 0.173 3.827 16 C 0.135 3.865 17 H 0.066 0.934 18 N -0.670 5.670 19 C 0.591 3.409 20 O -0.572 6.572 21 C -0.047 4.047 22 C -0.140 4.140 23 C -0.047 4.047 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.133 4.133 27 C 0.012 3.988 28 N -0.301 5.301 29 N -0.277 5.277 30 C 0.084 3.916 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.056 0.944 38 H 0.244 0.756 39 H 0.052 0.948 40 H -0.002 1.002 41 H 0.405 0.595 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.088 0.912 49 H 0.217 0.783 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 -4.572 3.588 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.155 4.155 5 C 0.012 3.988 6 N -0.324 5.324 7 C -0.381 4.381 8 H 0.088 0.912 9 C -0.239 4.239 10 N -0.580 5.580 11 Si 0.773 3.227 12 H -0.186 1.186 13 H -0.233 1.233 14 H -0.200 1.200 15 C 0.046 3.954 16 C 0.029 3.971 17 H 0.084 0.916 18 N -0.319 5.319 19 C 0.375 3.625 20 O -0.450 6.450 21 C -0.175 4.175 22 C -0.151 4.151 23 C -0.067 4.067 24 C -0.155 4.155 25 C -0.167 4.167 26 C -0.170 4.170 27 C -0.166 4.166 28 N -0.131 5.131 29 N -0.065 5.065 30 C -0.056 4.056 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.016 0.984 41 H 0.242 0.758 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.233 0.767 50 H 0.094 0.906 51 H 0.107 0.893 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.681 -5.138 3.096 19.621 hybrid contribution 1.390 0.170 -0.512 1.491 sum -17.291 -4.968 2.583 18.176 Atomic orbital electron populations 1.21766 0.93056 1.02030 1.02413 1.21279 0.96884 0.99219 0.93186 0.90227 1.21957 0.95853 1.00144 0.97537 1.21127 0.93434 0.95950 0.88326 1.44136 1.48466 1.39389 1.00381 1.19349 1.07173 1.02625 1.08939 0.91236 1.25812 0.98594 0.99564 0.99946 1.70122 1.37015 1.32262 1.18553 0.85694 0.79248 0.81008 0.76742 1.18632 1.23341 1.20050 1.20865 0.89398 0.95258 0.89847 1.21638 0.95860 0.80773 0.98865 0.91617 1.45711 1.64725 1.13763 1.07741 1.17187 0.77269 0.83946 0.84130 1.90806 1.50348 1.70492 1.33352 1.21547 0.95223 0.88292 1.12430 1.20779 0.92362 0.95428 1.06502 1.20950 0.91168 0.96323 0.98258 1.22973 0.92475 1.02703 0.97328 1.22803 0.95917 1.02303 0.95685 1.22990 0.96875 1.02032 0.95125 1.23822 0.95596 0.93284 1.03850 1.73102 1.02518 1.16324 1.21200 1.45654 1.10716 1.02468 1.47679 1.22307 0.74719 1.06078 1.02512 0.92779 0.90509 0.92920 0.89148 0.92426 0.96917 0.92506 0.94671 0.92938 0.98380 0.75799 0.90783 0.88494 0.90777 0.89963 0.89536 0.92731 0.89350 0.76652 0.90561 0.89308 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.05 71.98 0.65 -2.25 16 2 C -0.09 -2.43 2.48 -10.76 -0.03 -2.45 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -3.17 5.20 30.67 0.16 -3.01 16 5 C 0.14 5.04 6.51 86.36 0.56 5.60 16 6 N -0.60 -27.82 2.90 -698.94 -2.03 -29.85 16 7 C -0.25 -12.78 9.58 84.03 0.81 -11.98 16 8 H 0.07 3.39 7.85 -2.91 -0.02 3.37 16 9 C -0.04 -2.35 5.06 84.86 0.43 -1.93 16 10 N -0.93 -55.66 11.04 21.65 0.24 -55.43 16 11 Si 0.94 43.31 29.57 68.60 2.03 45.34 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 13 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.17 8.30 4.85 86.35 0.42 8.71 16 16 C 0.13 4.97 2.20 45.07 0.10 5.07 16 17 H 0.07 2.58 7.65 -2.39 -0.02 2.56 16 18 N -0.67 -23.40 4.25 -445.68 -1.89 -25.30 16 19 C 0.59 23.29 6.62 86.59 0.57 23.86 16 20 O -0.57 -27.64 16.79 -4.12 -0.07 -27.71 16 21 C -0.05 -1.61 6.71 40.79 0.27 -1.34 16 22 C -0.14 -3.94 5.49 -19.48 -0.11 -4.05 16 23 C -0.05 -1.10 4.11 -11.01 -0.05 -1.15 16 24 C -0.12 -1.85 7.60 31.18 0.24 -1.62 16 25 C -0.13 -1.87 8.09 31.18 0.25 -1.62 16 26 C -0.13 -2.65 7.62 31.12 0.24 -2.41 16 27 C 0.01 0.29 11.20 85.19 0.95 1.25 16 28 N -0.30 -9.20 11.90 -57.14 -0.68 -9.88 16 29 N -0.28 -9.30 3.75 -356.02 -1.33 -10.63 16 30 C 0.08 2.75 11.21 127.77 1.43 4.18 16 31 H 0.05 1.15 7.54 -2.39 -0.02 1.13 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.55 6.40 -2.39 -0.02 1.54 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 2.04 7.94 -2.39 -0.02 2.02 16 38 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.05 3.03 6.08 -2.39 -0.01 3.01 16 40 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 41 H 0.41 12.74 6.62 -92.71 -0.61 12.12 16 42 H 0.07 1.99 7.93 -2.39 -0.02 1.97 16 43 H 0.10 1.28 7.27 -2.39 -0.02 1.27 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 1.65 7.99 -2.39 -0.02 1.63 16 49 H 0.22 3.58 7.76 -2.91 -0.02 3.56 16 50 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 51 H 0.09 3.33 7.65 -2.39 -0.02 3.31 16 52 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -69.64 409.81 3.47 -66.18 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.30 Total: 32.41 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.91 Total: 14.87 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -5.70 Total: -131.08 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.07 Total: -27.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.64 3.47 -66.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966196021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.649 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds