Wall clock time and date at job start Wed Apr 1 2020 04:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46613 * 2 1 4 4 C 1.53041 * 109.45854 * 240.02771 * 2 1 3 5 5 C 1.53188 * 109.31360 * 178.61477 * 4 2 1 6 6 N 1.46931 * 108.77700 * 54.63925 * 5 4 2 7 7 C 1.36936 * 120.63425 * 126.41178 * 6 5 4 8 8 H 1.08007 * 119.99801 * 331.81196 * 7 6 5 9 9 C 1.38813 * 120.00005 * 151.81370 * 7 6 5 10 10 N 1.31615 * 119.99942 * 343.07472 * 9 7 6 11 11 Si 1.86799 * 119.99873 * 163.07730 * 9 7 6 12 12 H 1.48507 * 109.47204 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47370 * 119.99983 * 11 9 7 14 14 H 1.48501 * 109.46966 * 239.99949 * 11 9 7 15 15 C 1.46927 * 118.73334 * 306.39177 * 6 5 4 16 16 C 1.53039 * 109.46172 * 119.96393 * 2 1 3 17 17 H 1.09003 * 109.49846 * 301.33514 * 16 2 1 18 18 N 1.46501 * 109.49737 * 61.43160 * 16 2 1 19 19 C 1.34779 * 119.99989 * 204.84319 * 18 16 2 20 20 O 1.21289 * 120.00006 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00264 * 179.97438 * 19 18 16 22 22 C 1.50698 * 109.47162 * 179.97438 * 21 19 18 23 23 C 1.34854 * 125.95670 * 124.71672 * 22 21 19 24 24 N 1.36322 * 106.68300 * 179.88889 * 23 22 21 25 25 C 1.35417 * 107.40255 * 0.39768 * 24 23 22 26 26 N 1.30092 * 108.62541 * 359.72234 * 25 24 23 27 27 C 1.51036 * 123.98412 * 179.67422 * 25 24 23 28 28 C 1.53392 * 108.21400 * 344.09007 * 27 25 24 29 29 C 1.53149 * 109.24697 * 48.79857 * 28 27 25 30 30 C 1.46481 * 127.77292 * 180.22755 * 24 23 22 31 31 H 1.08998 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46732 * 299.97125 * 1 2 3 33 33 H 1.08997 * 109.47396 * 59.96755 * 1 2 3 34 34 H 1.08997 * 109.49821 * 58.66597 * 4 2 1 35 35 H 1.09002 * 109.52643 * 298.58292 * 4 2 1 36 36 H 1.09004 * 109.58964 * 294.84948 * 5 4 2 37 37 H 1.09004 * 109.70640 * 174.49136 * 5 4 2 38 38 H 0.96999 * 119.99981 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.58527 * 173.39576 * 15 6 5 40 40 H 1.09003 * 109.58602 * 293.81882 * 15 6 5 41 41 H 0.96994 * 120.00331 * 24.83797 * 18 16 2 42 42 H 1.08997 * 109.47101 * 299.99849 * 21 19 18 43 43 H 1.09006 * 109.46727 * 59.99630 * 21 19 18 44 44 H 1.07998 * 126.66193 * 0.02562 * 23 22 21 45 45 H 1.08998 * 109.71822 * 103.75506 * 27 25 24 46 46 H 1.09001 * 109.71602 * 224.40058 * 27 25 24 47 47 H 1.08998 * 109.50262 * 288.86647 * 28 27 25 48 48 H 1.09008 * 109.51200 * 168.73139 * 28 27 25 49 49 H 1.09000 * 109.46789 * 170.51525 * 29 28 27 50 50 H 1.09002 * 109.46408 * 50.52186 * 29 28 27 51 51 H 1.08997 * 109.58081 * 282.87659 * 30 24 23 52 52 H 1.08998 * 109.58304 * 43.29137 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0678 -1.2490 0.0000 7 6 4.9764 -2.2736 0.0001 8 1 5.0041 -2.9707 -0.8244 9 6 5.8616 -2.4162 1.0598 10 7 6.0662 -1.4123 1.8860 11 14 6.7624 -4.0329 1.3131 12 1 6.3595 -4.9950 0.2560 13 1 8.2272 -3.8003 1.2392 14 1 6.4162 -4.5889 2.6459 15 6 3.5714 -0.6886 1.2642 16 6 2.0399 -0.7207 1.2501 17 1 1.6573 -0.2206 2.1399 18 7 1.5801 -2.1116 1.2344 19 6 1.4546 -2.7930 2.3904 20 8 1.7228 -2.2548 3.4438 21 6 0.9811 -4.2236 2.3743 22 6 0.9289 -4.7513 3.7849 23 6 -0.1473 -5.2974 4.3867 24 7 0.2411 -5.6395 5.6479 25 6 1.5409 -5.2840 5.7818 26 7 1.9442 -4.7547 4.6639 27 6 2.3464 -5.4884 7.0430 28 6 1.3718 -5.7640 8.1949 29 6 0.3726 -6.8417 7.7640 30 6 -0.5655 -6.2712 6.6948 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3634 0.5143 -0.8897 34 1 1.6572 -0.2209 -2.1398 35 1 1.6977 -1.7558 -1.2388 36 1 3.9143 0.3408 -1.3674 37 1 3.9437 -1.2833 -2.0985 38 1 6.6844 -1.5121 2.6267 39 1 3.9417 -1.2845 2.0985 40 1 3.9143 0.3409 1.3672 41 1 1.3659 -2.5421 0.3920 42 1 -0.0133 -4.2722 1.9308 43 1 1.6714 -4.8281 1.7859 44 1 -1.1263 -5.4385 3.9530 45 1 3.0168 -6.3386 6.9174 46 1 2.9262 -4.5909 7.2584 47 1 0.8351 -4.8488 8.4444 48 1 1.9272 -6.1102 9.0667 49 1 -0.2118 -7.1612 8.6269 50 1 0.9131 -7.6954 7.3550 51 1 -1.2249 -5.5294 7.1454 52 1 -1.1595 -7.0764 6.2625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966236528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:43 Heat of formation + Delta-G solvation = 10.756040 kcal Electronic energy + Delta-G solvation = -31904.643982 eV Core-core repulsion = 27903.982281 eV Total energy + Delta-G solvation = -4000.661701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.22686 -40.92277 -39.01923 -37.48760 -35.86578 -34.21446 -34.14837 -32.93916 -32.64714 -30.76244 -29.78892 -28.94790 -28.13407 -25.81015 -24.87460 -23.81265 -23.13297 -22.71741 -22.20212 -20.82668 -20.20227 -19.95303 -18.60911 -18.10738 -17.63471 -16.94598 -16.70832 -16.58615 -16.09408 -15.67985 -15.34056 -15.31199 -15.12640 -15.04950 -14.82581 -14.67993 -14.50474 -14.45551 -14.43289 -14.04671 -13.56667 -13.34832 -13.16050 -13.04878 -12.96407 -12.74367 -12.67253 -12.56892 -12.42145 -12.18687 -12.08198 -11.97068 -11.91252 -11.87857 -11.52723 -11.25226 -11.03422 -10.78416 -10.60769 -10.49675 -10.37399 -9.79157 -9.11188 -8.62540 -7.85110 -5.29968 1.12147 1.36293 1.43763 1.49723 1.92990 1.96795 2.10644 2.48743 2.69366 3.32316 3.38382 3.62356 3.71068 3.72514 3.78894 3.91530 4.02395 4.03544 4.16282 4.19169 4.30461 4.35289 4.38325 4.45042 4.53783 4.56970 4.64459 4.70540 4.75411 4.80896 4.82970 4.88406 4.93461 4.95991 4.98442 4.98897 5.08583 5.14057 5.19441 5.24763 5.28215 5.30831 5.42831 5.50976 5.56490 5.62531 5.74802 5.86590 5.87460 6.36709 6.40512 6.88789 7.15912 7.34120 7.62460 7.90065 8.40529 9.19555 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003619 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.741468 B = 7736.135903 C = 9520.320825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.934 5.934 11 Si 0.951 3.049 12 H -0.256 1.256 13 H -0.290 1.290 14 H -0.309 1.309 15 C 0.173 3.827 16 C 0.142 3.858 17 H 0.053 0.947 18 N -0.693 5.693 19 C 0.507 3.493 20 O -0.582 6.582 21 C -0.046 4.046 22 C -0.022 4.022 23 C -0.035 4.035 24 N -0.455 5.455 25 C 0.183 3.817 26 N -0.524 5.524 27 C -0.039 4.039 28 C -0.117 4.117 29 C -0.128 4.128 30 C 0.095 3.905 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.010 0.990 37 H 0.059 0.941 38 H 0.242 0.758 39 H 0.042 0.958 40 H -0.011 1.011 41 H 0.406 0.594 42 H 0.146 0.854 43 H 0.096 0.904 44 H 0.216 0.784 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.103 0.897 49 H 0.122 0.878 50 H 0.072 0.928 51 H 0.095 0.905 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.729 -10.944 5.469 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.245 4.245 10 N -0.581 5.581 11 Si 0.781 3.219 12 H -0.180 1.180 13 H -0.217 1.217 14 H -0.238 1.238 15 C 0.046 3.954 16 C 0.035 3.965 17 H 0.071 0.929 18 N -0.345 5.345 19 C 0.294 3.706 20 O -0.462 6.462 21 C -0.087 4.087 22 C -0.152 4.152 23 C -0.169 4.169 24 N -0.138 5.138 25 C -0.080 4.080 26 N -0.243 5.243 27 C -0.078 4.078 28 C -0.155 4.155 29 C -0.166 4.166 30 C -0.025 4.025 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.007 0.993 41 H 0.243 0.757 42 H 0.164 0.836 43 H 0.114 0.886 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.140 0.860 50 H 0.091 0.909 51 H 0.113 0.887 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.760 -10.340 6.255 24.021 hybrid contribution 0.817 -0.575 0.249 1.030 sum -19.943 -10.915 6.504 23.647 Atomic orbital electron populations 1.21736 0.92794 1.02419 1.02005 1.21257 0.97084 0.98810 0.93432 0.91167 1.21946 0.95326 1.00669 0.97338 1.21170 0.93983 0.95749 0.88099 1.44158 1.48047 1.39413 1.00591 1.19458 1.08807 1.03410 1.06007 0.91022 1.25685 0.98870 0.99583 1.00325 1.70176 1.38509 1.30841 1.18548 0.85434 0.78030 0.81321 0.77145 1.18005 1.21661 1.23754 1.20827 0.90624 0.94365 0.89580 1.21316 0.94673 0.82440 0.98104 0.92930 1.45673 1.66980 1.13206 1.08611 1.21026 0.77017 0.89120 0.83451 1.90668 1.51476 1.71120 1.32908 1.19924 1.05208 0.90887 0.92642 1.20402 0.91110 1.06852 0.96798 1.22702 1.01254 1.07235 0.85717 1.45612 1.10622 1.45510 1.12089 1.23714 0.84720 1.02147 0.97404 1.69940 1.33041 1.19351 1.01996 1.20310 0.96818 1.02932 0.87730 1.21660 0.97040 0.99738 0.97020 1.21919 0.97581 0.98079 0.98991 1.22368 0.93932 0.98799 0.87400 0.91962 0.93572 0.90518 0.88991 0.91543 0.97210 0.92294 0.94898 0.93956 0.99323 0.75713 0.83577 0.88569 0.76712 0.89203 0.91032 0.91677 0.87812 0.85977 0.90937 0.88697 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.05 71.98 0.65 -2.40 16 2 C -0.09 -2.68 2.48 -10.77 -0.03 -2.71 16 3 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.11 -3.34 5.19 30.67 0.16 -3.19 16 5 C 0.13 5.41 6.52 86.36 0.56 5.97 16 6 N -0.60 -30.77 2.91 -699.07 -2.03 -32.81 16 7 C -0.25 -14.09 9.58 84.03 0.81 -13.28 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 9 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 10 N -0.93 -61.62 11.20 21.65 0.24 -61.38 16 11 Si 0.95 49.95 29.59 68.60 2.03 51.98 16 12 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 14 H -0.31 -17.31 7.11 99.48 0.71 -16.60 16 15 C 0.17 9.28 4.90 86.36 0.42 9.71 16 16 C 0.14 5.83 2.24 45.07 0.10 5.93 16 17 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 18 N -0.69 -25.84 4.25 -442.15 -1.88 -27.72 16 19 C 0.51 21.17 7.79 87.66 0.68 21.85 16 20 O -0.58 -30.88 15.23 -3.06 -0.05 -30.93 16 21 C -0.05 -1.48 6.26 29.10 0.18 -1.29 16 22 C -0.02 -0.80 5.87 41.40 0.24 -0.56 16 23 C -0.04 -0.90 11.53 83.22 0.96 0.06 16 24 N -0.46 -11.23 3.13 -513.81 -1.61 -12.84 16 25 C 0.18 6.09 7.65 138.23 1.06 7.15 16 26 N -0.52 -22.72 10.62 -175.70 -1.87 -24.58 16 27 C -0.04 -1.00 6.33 30.09 0.19 -0.81 16 28 C -0.12 -1.75 5.96 30.78 0.18 -1.57 16 29 C -0.13 -1.31 5.94 30.73 0.18 -1.13 16 30 C 0.10 1.21 6.98 86.47 0.60 1.81 16 31 H 0.06 1.32 7.54 -2.39 -0.02 1.31 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.84 6.41 -2.39 -0.02 1.83 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 38 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.04 2.75 6.06 -2.38 -0.01 2.74 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.41 12.59 6.64 -92.71 -0.62 11.98 16 42 H 0.15 2.97 8.11 -2.39 -0.02 2.95 16 43 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 44 H 0.22 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 48 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 0.82 8.12 -2.39 -0.02 0.81 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -93.75 404.05 2.50 -91.25 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.29 Total: 24.06 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 7.38 Total: 22.97 kcal Atomic # 7 Polarization: -152.18 SS G_CDS: -7.15 Total: -159.33 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.03 Total: 51.98 kcal Total: -93.75 2.50 -91.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966236528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.006 kcal (2) G-P(sol) polarization free energy of solvation -93.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds